Wall clock time and date at job start Fri Apr 10 2020 17:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47324 * 265.97811 * 3 2 1 5 5 H 1.48501 * 109.47031 * 25.97753 * 3 2 1 6 6 H 1.48495 * 109.47455 * 145.97708 * 3 2 1 7 7 C 1.37885 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99987 * 353.95537 * 7 2 1 9 9 C 1.50703 * 119.99574 * 173.96541 * 7 2 1 10 10 O 1.42893 * 110.88852 * 325.03462 * 9 7 2 11 11 C 1.55160 * 111.00552 * 88.91725 * 9 7 2 12 12 C 1.54320 * 102.93940 * 153.57097 * 11 9 7 13 13 N 1.47017 * 107.27502 * 337.80795 * 12 11 9 14 14 C 1.34776 * 125.64997 * 178.98457 * 13 12 11 15 15 O 1.21598 * 120.00038 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00010 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99935 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47074 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.47856 * 305.02834 * 18 17 16 20 20 C 1.53094 * 109.48031 * 184.99985 * 18 17 16 21 21 C 1.53172 * 109.16030 * 182.40845 * 20 18 17 22 22 C 1.53177 * 109.03799 * 56.98534 * 21 20 18 23 23 C 1.53090 * 109.16231 * 303.01680 * 22 21 20 24 24 O 1.42906 * 109.47649 * 65.06121 * 18 17 16 25 25 C 1.47431 * 108.70552 * 358.94216 * 13 12 11 26 26 H 0.97000 * 120.00282 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00129 * 294.59097 * 10 9 7 28 28 H 1.08999 * 110.72218 * 271.93693 * 11 9 7 29 29 H 1.09004 * 110.71540 * 35.21168 * 11 9 7 30 30 H 1.09004 * 109.88286 * 97.22646 * 12 11 9 31 31 H 1.09003 * 109.88211 * 218.38892 * 12 11 9 32 32 H 0.96997 * 120.00301 * 0.02562 * 16 14 13 33 33 H 1.09003 * 109.47581 * 300.00297 * 17 16 14 34 34 H 1.09004 * 109.47052 * 60.00276 * 17 16 14 35 35 H 1.08997 * 109.52561 * 302.31970 * 20 18 17 36 36 H 1.09001 * 109.51922 * 62.44601 * 20 18 17 37 37 H 1.09003 * 109.54459 * 176.84990 * 21 20 18 38 38 H 1.08995 * 109.54964 * 297.02480 * 21 20 18 39 39 H 1.09001 * 109.52297 * 62.91807 * 22 21 20 40 40 H 1.08998 * 109.52419 * 183.04374 * 22 21 20 41 41 H 1.08999 * 109.48401 * 177.58622 * 23 22 21 42 42 H 1.09002 * 109.48272 * 297.62693 * 23 22 21 43 43 H 1.09002 * 110.36346 * 265.29199 * 25 13 12 44 44 H 1.08999 * 110.37044 * 142.96598 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5817 1.9973 -1.3966 5 1 1.4067 2.6757 0.6133 6 1 3.5016 1.4662 0.7833 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0975 9 6 3.5053 -1.1976 -0.1377 10 8 3.9403 -0.1461 -1.0020 11 6 4.1910 -1.0961 1.2504 12 6 5.5546 -1.7784 1.0130 13 7 5.4052 -2.6578 -0.1556 14 6 6.3786 -3.4164 -0.6974 15 8 6.1404 -4.1091 -1.6680 16 7 7.6160 -3.4073 -0.1634 17 6 8.6739 -4.2323 -0.7520 18 6 9.9703 -4.0387 0.0373 19 1 10.2171 -2.9778 0.0763 20 6 11.1054 -4.8022 -0.6501 21 6 12.3852 -4.6531 0.1781 22 6 12.1221 -5.1588 1.5998 23 6 10.9478 -4.3817 2.2003 24 8 9.7985 -4.5375 1.3655 25 6 4.0140 -2.5733 -0.6361 26 1 -0.4850 0.8400 0.0004 27 1 3.6521 -0.2465 -1.9196 28 1 4.3262 -0.0536 1.5384 29 1 3.6165 -1.6343 2.0045 30 1 6.3167 -1.0247 0.8147 31 1 5.8316 -2.3675 1.8873 32 1 7.8060 -2.8551 0.6111 33 1 8.3793 -5.2812 -0.7159 34 1 8.8323 -3.9349 -1.7886 35 1 10.8413 -5.8569 -0.7260 36 1 11.2666 -4.3943 -1.6480 37 1 13.1837 -5.2401 -0.2758 38 1 12.6780 -3.6037 0.2113 39 1 11.8786 -6.2208 1.5694 40 1 13.0117 -5.0064 2.2111 41 1 10.7284 -4.7666 3.1962 42 1 11.2075 -3.3252 2.2678 43 1 3.4152 -3.3771 -0.2077 44 1 3.9853 -2.6167 -1.7249 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591932293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:40 Heat of formation + Delta-G solvation = -153.789798 kcal Electronic energy + Delta-G solvation = -24987.147986 eV Core-core repulsion = 21324.129758 eV Total energy + Delta-G solvation = -3663.018228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40263 -40.38606 -39.29528 -36.30772 -35.93482 -34.56211 -34.44626 -32.73782 -31.60666 -29.95554 -28.19125 -26.70449 -25.04211 -24.03140 -23.10411 -21.57210 -21.44644 -20.79202 -19.59637 -18.98169 -17.55012 -17.37198 -16.98615 -16.87870 -16.82780 -16.47196 -15.82139 -15.44967 -15.35484 -15.17094 -15.10849 -14.55090 -14.10919 -14.00564 -13.89194 -13.76601 -13.56897 -13.25828 -13.19520 -13.05576 -12.76102 -12.27887 -12.23094 -12.21084 -11.98127 -11.90024 -11.65082 -11.38657 -11.23084 -11.19279 -10.62811 -10.43812 -10.39441 -10.23646 -9.41589 -8.32736 -6.46855 1.52690 1.53479 1.60699 1.74048 2.11403 2.46450 2.73691 2.97972 3.03611 3.51082 3.69137 3.85281 3.91698 3.94153 4.04905 4.09401 4.14551 4.26249 4.27867 4.43722 4.49915 4.58030 4.61278 4.68537 4.77519 4.83868 4.87517 4.93317 4.98693 5.07660 5.14966 5.17900 5.20900 5.22356 5.39603 5.39964 5.46978 5.54912 6.06311 6.09232 6.27724 6.59958 6.92773 7.00553 7.31335 7.52377 8.80407 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.003096 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.053459 B = 9042.728096 C = 9311.197204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.026 3.974 3 Si 1.005 2.995 4 H -0.285 1.285 5 H -0.334 1.334 6 H -0.249 1.249 7 C -0.548 4.548 8 H 0.043 0.957 9 C 0.217 3.783 10 O -0.561 6.561 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.641 6.641 16 N -0.727 5.727 17 C 0.147 3.853 18 C 0.087 3.913 19 H 0.077 0.923 20 C -0.147 4.147 21 C -0.120 4.120 22 C -0.156 4.156 23 C 0.054 3.946 24 O -0.399 6.399 25 C 0.117 3.883 26 H 0.267 0.733 27 H 0.380 0.620 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.409 0.591 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.897 -5.485 4.226 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.174 4.174 3 Si 0.837 3.163 4 H -0.212 1.212 5 H -0.266 1.266 6 H -0.174 1.174 7 C -0.586 4.586 8 H 0.061 0.939 9 C 0.176 3.824 10 O -0.369 6.369 11 C -0.157 4.157 12 C -0.014 4.014 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.523 6.523 16 N -0.383 5.383 17 C 0.023 3.977 18 C 0.029 3.971 19 H 0.095 0.905 20 C -0.185 4.185 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.022 4.022 24 O -0.318 6.318 25 C -0.006 4.006 26 H 0.076 0.924 27 H 0.229 0.771 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.245 0.755 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 27.766 -5.855 4.112 28.673 hybrid contribution -0.581 0.572 -0.395 0.906 sum 27.185 -5.283 3.717 27.942 Atomic orbital electron populations 1.70087 1.08599 1.28562 1.50280 1.25863 0.95294 1.03724 0.92473 0.84819 0.77022 0.75957 0.78459 1.21235 1.26642 1.17396 1.21342 0.90945 0.93777 1.52550 0.93894 1.20109 0.91246 0.82706 0.88301 1.86059 1.78535 1.48697 1.23642 1.22894 0.94297 1.01621 0.96911 1.22117 0.98656 0.92925 0.87654 1.47605 1.10022 1.46018 1.33042 1.15618 0.80745 0.79875 0.82087 1.90856 1.82617 1.48057 1.30802 1.44867 1.07972 1.50037 1.35422 1.21299 0.84837 0.94870 0.96699 1.22300 0.93437 0.98360 0.83016 0.90472 1.22124 0.94762 1.01338 1.00278 1.21587 0.96843 1.02332 0.94972 1.22190 0.99277 1.00590 0.97274 1.22767 0.85411 1.00020 0.94040 1.87977 1.38181 1.83197 1.22480 1.22612 0.80140 0.99048 0.98850 0.92393 0.77095 0.89809 0.89718 0.90357 0.89669 0.75522 0.92606 0.90101 0.91373 0.89360 0.90299 0.90895 0.91846 0.89248 0.88225 0.92085 0.92598 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.96 21.45 0.30 -56.50 16 2 C 0.03 1.47 5.46 84.66 0.46 1.93 16 3 Si 1.00 46.86 24.91 68.60 1.71 48.57 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.33 -16.08 7.11 99.48 0.71 -15.37 16 6 H -0.25 -10.74 5.23 99.48 0.52 -10.22 16 7 C -0.55 -29.40 8.87 25.60 0.23 -29.17 16 8 H 0.04 2.58 7.98 -2.92 -0.02 2.55 16 9 C 0.22 9.39 0.69 -10.14 -0.01 9.39 16 10 O -0.56 -23.30 8.85 -148.98 -1.32 -24.62 16 11 C -0.12 -4.36 5.79 31.78 0.18 -4.18 16 12 C 0.11 3.22 6.15 86.73 0.53 3.75 16 13 N -0.63 -22.60 3.33 -829.73 -2.76 -25.36 16 14 C 0.71 25.87 8.49 179.06 1.52 27.39 16 15 O -0.64 -28.31 16.60 -4.02 -0.07 -28.38 16 16 N -0.73 -19.36 5.46 -478.51 -2.61 -21.97 16 17 C 0.15 3.32 5.34 86.38 0.46 3.78 16 18 C 0.09 1.40 2.68 30.63 0.08 1.48 16 19 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 20 C -0.15 -1.82 5.42 30.68 0.17 -1.66 16 21 C -0.12 -1.12 6.03 30.71 0.19 -0.93 16 22 C -0.16 -1.53 6.14 30.68 0.19 -1.34 16 23 C 0.05 0.66 6.84 72.01 0.49 1.15 16 24 O -0.40 -7.39 10.35 -148.98 -1.54 -8.94 16 25 C 0.12 4.88 6.08 86.85 0.53 5.41 16 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.38 14.42 9.09 -74.06 -0.67 13.74 16 28 H 0.08 3.04 6.26 -2.39 -0.01 3.03 16 29 H 0.08 3.11 8.03 -2.38 -0.02 3.09 16 30 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.41 9.02 7.46 -92.71 -0.69 8.33 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 2.45 7.97 -2.39 -0.02 2.43 16 44 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 Total: -1.00 -71.78 345.88 -1.82 -73.60 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.55 Total: 26.60 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 5.02 Total: 17.00 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.08 Total: -103.83 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -2.93 Total: -61.94 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.71 Total: 48.57 kcal Total: -71.78 -1.82 -73.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591932293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.194 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds