Wall clock time and date at job start Fri Apr 10 2020 17:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.79881 * 2 1 4 4 C 1.55212 * 110.77989 * 236.58159 * 2 1 3 5 5 N 1.48124 * 103.26348 * 279.11319 * 4 2 1 6 6 C 1.34770 * 127.03636 * 140.64902 * 5 4 2 7 7 O 1.21285 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00305 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.52641 * 55.12947 * 8 6 5 10 10 C 1.53152 * 109.52492 * 295.00191 * 8 6 5 11 11 O 1.43073 * 109.14945 * 184.78332 * 10 8 6 12 12 C 1.43072 * 113.59460 * 57.95118 * 11 10 8 13 13 C 1.53141 * 109.15327 * 302.05025 * 12 11 10 14 14 O 1.43067 * 109.15394 * 55.30815 * 13 12 11 15 15 C 1.47488 * 105.93080 * 320.68378 * 5 4 2 16 16 C 1.54001 * 107.08590 * 25.44554 * 15 5 4 17 17 H 1.08998 * 110.32510 * 117.68480 * 16 15 5 18 18 N 1.46499 * 110.33056 * 239.80196 * 16 15 5 19 19 C 1.36935 * 119.99938 * 272.16321 * 18 16 15 20 20 H 1.07999 * 120.00083 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99535 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00576 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00326 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00037 * 23 21 19 27 27 H 1.08992 * 109.47085 * 296.71336 * 1 2 3 28 28 H 1.09009 * 109.46691 * 56.71180 * 1 2 3 29 29 H 1.09001 * 109.47231 * 176.70879 * 1 2 3 30 30 H 1.09001 * 109.46883 * 183.29340 * 3 2 1 31 31 H 1.09005 * 109.46992 * 303.28361 * 3 2 1 32 32 H 1.08994 * 109.47276 * 63.28940 * 3 2 1 33 33 H 1.08999 * 110.67660 * 160.66067 * 4 2 1 34 34 H 1.09000 * 110.78005 * 37.61343 * 4 2 1 35 35 H 1.08990 * 109.52200 * 304.68676 * 10 8 6 36 36 H 1.08998 * 109.52305 * 64.87986 * 10 8 6 37 37 H 1.09005 * 109.52578 * 61.94892 * 12 11 10 38 38 H 1.09004 * 109.52675 * 182.07614 * 12 11 10 39 39 H 1.08998 * 109.52467 * 175.21380 * 13 12 11 40 40 H 1.09003 * 109.51898 * 295.33909 * 13 12 11 41 41 H 1.09002 * 109.91577 * 266.08580 * 15 5 4 42 42 H 1.08998 * 110.07632 * 144.89740 * 15 5 4 43 43 H 0.96999 * 119.99984 * 92.16938 * 18 16 15 44 44 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 6 2.0807 -0.7992 -1.2112 5 7 1.9878 -2.2070 -0.7601 6 6 1.6227 -3.2737 -1.4985 7 8 1.3267 -3.1304 -2.6659 8 6 1.5822 -4.6444 -0.8737 9 1 0.9426 -4.6239 0.0087 10 6 2.9983 -5.0648 -0.4696 11 8 2.9674 -6.4091 0.0193 12 6 2.4501 -7.3503 -0.9259 13 6 1.0340 -6.9300 -1.3301 14 8 1.0649 -5.5858 -1.8189 15 6 2.3757 -2.2025 0.6629 16 6 2.0776 -0.7937 1.2087 17 1 1.3285 -0.8445 1.9989 18 7 3.3053 -0.1723 1.7116 19 6 3.6953 -0.3779 3.0080 20 1 3.0976 -0.9978 3.6599 21 6 4.8583 0.2113 3.4846 22 7 5.2334 0.0132 4.7307 23 14 5.8917 1.2840 2.3574 24 1 6.8983 0.4439 1.6604 25 1 5.0132 1.9383 1.3547 26 1 6.5848 2.3228 3.1610 27 1 -0.3633 0.4619 0.9179 28 1 -0.3633 0.5641 -0.8591 29 1 -0.3634 -1.0260 -0.0590 30 1 3.1614 1.4056 -0.0590 31 1 1.6751 1.9702 -0.8591 32 1 1.7705 1.9339 0.9179 33 1 3.1169 -0.5275 -1.4126 34 1 1.4631 -0.6369 -2.0946 35 1 3.6566 -5.0074 -1.3363 36 1 3.3660 -4.4010 0.3129 37 1 3.0900 -7.3699 -1.8081 38 1 2.4219 -8.3420 -0.4744 39 1 0.6663 -7.5938 -2.1125 40 1 0.3754 -6.9885 -0.4635 41 1 3.4395 -2.4202 0.7584 42 1 1.7947 -2.9438 1.2115 43 1 3.8418 0.3848 1.1263 44 1 6.0463 0.4247 5.0636 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995496998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:39 Heat of formation + Delta-G solvation = -93.573676 kcal Electronic energy + Delta-G solvation = -25939.792250 eV Core-core repulsion = 22279.385189 eV Total energy + Delta-G solvation = -3660.407061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71190 -39.57563 -37.92915 -36.13350 -34.28494 -33.44785 -31.76576 -31.17489 -28.62569 -28.21392 -27.02565 -26.20550 -24.95421 -23.72778 -22.05622 -21.40843 -19.54271 -18.98740 -17.72377 -17.36550 -16.84839 -16.70364 -16.16434 -15.77497 -15.36413 -15.26525 -14.65014 -14.46181 -14.14814 -13.91165 -13.60274 -13.44867 -13.04141 -12.92524 -12.63063 -12.43426 -12.10829 -12.05873 -11.86791 -11.79662 -11.59156 -11.25504 -11.08371 -11.00112 -10.77866 -10.64931 -10.57438 -10.37323 -10.00179 -9.74250 -9.63719 -9.38170 -9.08832 -8.52755 -7.44088 -5.88449 -3.26207 2.57498 2.63905 3.28052 3.31017 3.38436 3.48480 3.73171 4.30632 4.42264 4.48201 4.68180 4.74861 4.77868 4.84893 4.89877 4.95398 5.04549 5.23333 5.24461 5.35897 5.43527 5.47400 5.51855 5.52463 5.58951 5.72375 5.82266 5.86410 5.94968 6.06260 6.11831 6.17485 6.21454 6.30343 6.42374 6.60809 6.66731 6.71380 6.74103 7.62012 7.86295 8.18266 8.30192 9.07112 9.79247 9.97413 11.29215 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.004873 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.318315 B = 5744.977587 C = 6861.857316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.128 4.128 4 C 0.118 3.882 5 N -0.612 5.612 6 C 0.540 3.460 7 O -0.529 6.529 8 C 0.043 3.957 9 H 0.094 0.906 10 C 0.034 3.966 11 O -0.370 6.370 12 C 0.019 3.981 13 C 0.024 3.976 14 O -0.353 6.353 15 C 0.067 3.933 16 C 0.183 3.817 17 H 0.076 0.924 18 N -0.738 5.738 19 C -0.253 4.253 20 H 0.092 0.908 21 C 0.012 3.988 22 N -0.928 5.928 23 Si 0.878 3.122 24 H -0.284 1.284 25 H -0.275 1.275 26 H -0.290 1.290 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.365 0.635 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -8.660 -11.188 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.347 5.347 6 C 0.327 3.673 7 O -0.405 6.405 8 C -0.018 4.018 9 H 0.112 0.888 10 C -0.043 4.043 11 O -0.288 6.288 12 C -0.058 4.058 13 C -0.053 4.053 14 O -0.271 6.271 15 C -0.059 4.059 16 C 0.071 3.929 17 H 0.094 0.906 18 N -0.382 5.382 19 C -0.382 4.382 20 H 0.110 0.890 21 C -0.185 4.185 22 N -0.575 5.575 23 Si 0.708 3.292 24 H -0.210 1.210 25 H -0.201 1.201 26 H -0.216 1.216 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.201 0.799 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.414 -8.736 -11.597 16.781 hybrid contribution 0.926 0.591 -0.570 1.238 sum -7.489 -8.144 -12.167 16.446 Atomic orbital electron populations 1.21697 0.93600 1.01584 1.01777 1.22014 0.95958 0.95883 0.95389 1.21649 1.01008 0.94117 1.01825 1.22609 1.01074 0.79275 0.97436 1.48721 1.66161 1.07138 1.12655 1.19417 0.77597 0.84290 0.86002 1.90705 1.48508 1.85240 1.16059 1.22490 0.97321 0.88888 0.93100 0.88805 1.23256 0.94539 0.84671 1.01825 1.88163 1.84346 1.16332 1.39987 1.23310 0.94584 0.93779 0.94099 1.23331 0.97012 0.83983 1.01011 1.88200 1.84151 1.15964 1.38755 1.23569 1.01163 1.02011 0.79127 1.21043 0.89815 0.88657 0.93405 0.90566 1.42953 1.25024 1.58578 1.11613 1.19063 1.06136 1.26558 0.86470 0.88992 1.24654 0.97973 0.99990 0.95865 1.69695 1.25488 1.48057 1.14262 0.86673 0.80951 0.80989 0.80540 1.21020 1.20083 1.21614 0.92049 0.92777 0.92845 0.92272 0.93208 0.91333 0.90970 0.90139 0.91567 0.86248 0.91951 0.87483 0.87316 0.91828 0.89935 0.91375 0.79913 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.50 37.16 0.32 -1.30 16 2 C -0.09 -1.29 0.94 -152.49 -0.14 -1.43 16 3 C -0.13 -1.83 7.84 37.16 0.29 -1.54 16 4 C 0.12 1.71 5.99 -1.98 -0.01 1.70 16 5 N -0.61 -9.11 3.19 -169.59 -0.54 -9.65 16 6 C 0.54 8.63 7.28 -10.99 -0.08 8.55 16 7 O -0.53 -10.23 16.72 -14.26 -0.24 -10.47 16 8 C 0.04 0.59 2.63 -27.81 -0.07 0.52 16 9 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 10 C 0.03 0.45 6.16 37.24 0.23 0.68 16 11 O -0.37 -4.73 10.85 -48.80 -0.53 -5.26 16 12 C 0.02 0.18 7.05 37.23 0.26 0.45 16 13 C 0.02 0.23 7.05 37.23 0.26 0.49 16 14 O -0.35 -4.97 10.03 -62.51 -0.63 -5.60 16 15 C 0.07 1.01 5.17 -2.98 -0.02 1.00 16 16 C 0.18 3.06 3.09 -66.56 -0.21 2.85 16 17 H 0.08 1.31 7.82 -51.93 -0.41 0.91 16 18 N -0.74 -15.36 4.28 -52.10 -0.22 -15.58 16 19 C -0.25 -6.46 10.45 -15.06 -0.16 -6.61 16 20 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 21 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 22 N -0.93 -27.64 13.97 55.49 0.78 -26.87 16 23 Si 0.88 20.71 27.74 -169.99 -4.71 16.00 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -5.97 6.48 56.52 0.37 -5.61 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.05 0.68 8.07 -51.93 -0.42 0.27 16 30 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 34 H 0.08 1.16 7.77 -51.93 -0.40 0.75 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.12 1.54 5.88 -51.93 -0.31 1.24 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.37 7.18 -51.93 -0.37 0.99 16 42 H 0.07 0.93 7.40 -51.93 -0.38 0.55 16 43 H 0.37 7.56 3.44 -40.82 -0.14 7.42 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -31.85 344.24 -7.30 -39.15 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.97 Total: 7.52 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 0.58 Total: 5.56 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.01 Total: -52.10 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.39 Total: -21.32 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.71 Total: 16.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.85 -7.30 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995496998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.425 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds