Wall clock time and date at job start Fri Apr 10 2020 17:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.79881 * 2 1 4 4 C 1.55212 * 110.77989 * 236.58159 * 2 1 3 5 5 N 1.48124 * 103.26348 * 279.11319 * 4 2 1 6 6 C 1.34770 * 127.03636 * 140.64902 * 5 4 2 7 7 O 1.21285 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00305 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.52641 * 55.12947 * 8 6 5 10 10 C 1.53152 * 109.52492 * 295.00191 * 8 6 5 11 11 O 1.43073 * 109.14945 * 184.78332 * 10 8 6 12 12 C 1.43072 * 113.59460 * 57.95118 * 11 10 8 13 13 C 1.53141 * 109.15327 * 302.05025 * 12 11 10 14 14 O 1.43067 * 109.15394 * 55.30815 * 13 12 11 15 15 C 1.47488 * 105.93080 * 320.68378 * 5 4 2 16 16 C 1.54001 * 107.08590 * 25.44554 * 15 5 4 17 17 H 1.08998 * 110.32510 * 117.68480 * 16 15 5 18 18 N 1.46499 * 110.33056 * 239.80196 * 16 15 5 19 19 C 1.36935 * 119.99938 * 272.16321 * 18 16 15 20 20 H 1.07999 * 120.00083 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99535 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00576 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00326 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00037 * 23 21 19 27 27 H 1.08992 * 109.47085 * 296.71336 * 1 2 3 28 28 H 1.09009 * 109.46691 * 56.71180 * 1 2 3 29 29 H 1.09001 * 109.47231 * 176.70879 * 1 2 3 30 30 H 1.09001 * 109.46883 * 183.29340 * 3 2 1 31 31 H 1.09005 * 109.46992 * 303.28361 * 3 2 1 32 32 H 1.08994 * 109.47276 * 63.28940 * 3 2 1 33 33 H 1.08999 * 110.67660 * 160.66067 * 4 2 1 34 34 H 1.09000 * 110.78005 * 37.61343 * 4 2 1 35 35 H 1.08990 * 109.52200 * 304.68676 * 10 8 6 36 36 H 1.08998 * 109.52305 * 64.87986 * 10 8 6 37 37 H 1.09005 * 109.52578 * 61.94892 * 12 11 10 38 38 H 1.09004 * 109.52675 * 182.07614 * 12 11 10 39 39 H 1.08998 * 109.52467 * 175.21380 * 13 12 11 40 40 H 1.09003 * 109.51898 * 295.33909 * 13 12 11 41 41 H 1.09002 * 109.91577 * 266.08580 * 15 5 4 42 42 H 1.08998 * 110.07632 * 144.89740 * 15 5 4 43 43 H 0.96999 * 119.99984 * 92.16938 * 18 16 15 44 44 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 6 2.0807 -0.7992 -1.2112 5 7 1.9878 -2.2070 -0.7601 6 6 1.6227 -3.2737 -1.4985 7 8 1.3267 -3.1304 -2.6659 8 6 1.5822 -4.6444 -0.8737 9 1 0.9426 -4.6239 0.0087 10 6 2.9983 -5.0648 -0.4696 11 8 2.9674 -6.4091 0.0193 12 6 2.4501 -7.3503 -0.9259 13 6 1.0340 -6.9300 -1.3301 14 8 1.0649 -5.5858 -1.8189 15 6 2.3757 -2.2025 0.6629 16 6 2.0776 -0.7937 1.2087 17 1 1.3285 -0.8445 1.9989 18 7 3.3053 -0.1723 1.7116 19 6 3.6953 -0.3779 3.0080 20 1 3.0976 -0.9978 3.6599 21 6 4.8583 0.2113 3.4846 22 7 5.2334 0.0132 4.7307 23 14 5.8917 1.2840 2.3574 24 1 6.8983 0.4439 1.6604 25 1 5.0132 1.9383 1.3547 26 1 6.5848 2.3228 3.1610 27 1 -0.3633 0.4619 0.9179 28 1 -0.3633 0.5641 -0.8591 29 1 -0.3634 -1.0260 -0.0590 30 1 3.1614 1.4056 -0.0590 31 1 1.6751 1.9702 -0.8591 32 1 1.7705 1.9339 0.9179 33 1 3.1169 -0.5275 -1.4126 34 1 1.4631 -0.6369 -2.0946 35 1 3.6566 -5.0074 -1.3363 36 1 3.3660 -4.4010 0.3129 37 1 3.0900 -7.3699 -1.8081 38 1 2.4219 -8.3420 -0.4744 39 1 0.6663 -7.5938 -2.1125 40 1 0.3754 -6.9885 -0.4635 41 1 3.4395 -2.4202 0.7584 42 1 1.7947 -2.9438 1.2115 43 1 3.8418 0.3848 1.1263 44 1 6.0463 0.4247 5.0636 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995496998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:38 Heat of formation + Delta-G solvation = -115.105716 kcal Electronic energy + Delta-G solvation = -25940.725949 eV Core-core repulsion = 22279.385189 eV Total energy + Delta-G solvation = -3661.340760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85067 -40.67713 -39.21017 -37.11680 -35.92223 -34.81293 -33.07832 -32.68087 -29.73704 -29.48280 -28.19511 -27.32694 -26.02796 -25.34027 -23.26571 -22.59683 -20.76307 -20.40635 -19.39358 -18.51463 -17.91457 -17.72446 -17.18755 -16.93132 -16.59173 -16.44213 -16.09473 -15.93561 -15.39921 -15.17077 -14.79838 -14.61643 -14.47775 -14.19478 -13.91829 -13.56416 -13.46391 -13.28739 -13.09103 -12.91457 -12.78520 -12.70378 -12.60219 -12.15451 -12.01336 -11.94105 -11.84268 -11.68815 -11.55656 -11.33465 -11.01289 -10.88530 -10.34424 -9.80274 -9.32498 -7.97923 -5.31701 1.33388 1.40555 1.42586 1.49563 1.52076 2.51508 2.58293 2.71421 3.25113 3.32345 3.39212 3.53299 3.61059 3.73007 3.78129 3.92133 3.95906 4.07347 4.18115 4.26205 4.34367 4.42348 4.45396 4.51366 4.58803 4.72710 4.74195 4.75943 4.85508 4.87130 4.95949 5.01275 5.06343 5.09174 5.30203 5.38015 5.48499 5.80196 5.83712 5.83938 6.25733 6.37533 6.93398 7.11918 7.86365 8.04653 9.23056 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.004873 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.318315 B = 5744.977587 C = 6861.857316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.127 4.127 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.540 3.460 7 O -0.565 6.565 8 C 0.048 3.952 9 H 0.108 0.892 10 C 0.040 3.960 11 O -0.385 6.385 12 C 0.014 3.986 13 C 0.019 3.981 14 O -0.379 6.379 15 C 0.077 3.923 16 C 0.174 3.826 17 H 0.073 0.927 18 N -0.739 5.739 19 C -0.224 4.224 20 H 0.065 0.935 21 C -0.056 4.056 22 N -0.981 5.981 23 Si 0.938 3.062 24 H -0.284 1.284 25 H -0.245 1.245 26 H -0.302 1.302 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.369 0.631 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 -8.992 -12.891 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.185 4.185 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.328 3.672 7 O -0.444 6.444 8 C -0.013 4.013 9 H 0.125 0.875 10 C -0.037 4.037 11 O -0.304 6.304 12 C -0.062 4.062 13 C -0.057 4.057 14 O -0.298 6.298 15 C -0.048 4.048 16 C 0.064 3.936 17 H 0.091 0.909 18 N -0.383 5.383 19 C -0.355 4.355 20 H 0.083 0.917 21 C -0.248 4.248 22 N -0.632 5.632 23 Si 0.766 3.234 24 H -0.210 1.210 25 H -0.169 1.169 26 H -0.229 1.229 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.205 0.795 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.490 -9.080 -13.345 18.724 hybrid contribution 1.133 0.571 -0.060 1.270 sum -8.356 -8.509 -13.405 17.943 Atomic orbital electron populations 1.21663 0.91968 1.01767 1.02773 1.21956 0.97106 0.95560 0.93568 1.21634 1.00213 0.94091 1.02551 1.22685 1.01319 0.78977 0.97646 1.48693 1.65519 1.07398 1.12324 1.19820 0.76668 0.85135 0.85540 1.90683 1.50262 1.85840 1.17571 1.22438 0.97957 0.87742 0.93149 0.87501 1.23127 0.94009 0.85208 1.01367 1.88141 1.84694 1.16367 1.41175 1.23572 0.94355 0.94291 0.93995 1.23623 0.97392 0.82331 1.02378 1.88165 1.84260 1.17720 1.39618 1.23299 1.00772 1.01271 0.79488 1.21246 0.88155 0.89689 0.94496 0.90922 1.42904 1.26382 1.59033 1.09946 1.19031 1.04757 1.23935 0.87790 0.91664 1.25346 0.99813 1.02407 0.97185 1.69865 1.26291 1.50431 1.16599 0.85685 0.79516 0.79077 0.79112 1.21039 1.16914 1.22875 0.91682 0.91101 0.93169 0.93549 0.90504 0.92362 0.90884 0.89637 0.92166 0.86605 0.91861 0.84568 0.84820 0.90764 0.91136 0.89678 0.79526 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.50 71.98 0.61 -2.17 16 2 C -0.08 -2.10 0.94 -50.87 -0.05 -2.15 16 3 C -0.13 -3.29 7.84 71.98 0.56 -2.73 16 4 C 0.12 3.11 5.99 86.83 0.52 3.63 16 5 N -0.61 -17.13 3.19 -808.85 -2.58 -19.71 16 6 C 0.54 16.61 7.28 87.66 0.64 17.25 16 7 O -0.56 -21.34 16.72 15.90 0.27 -21.08 16 8 C 0.05 1.26 2.63 29.90 0.08 1.34 16 9 H 0.11 2.46 7.70 -2.39 -0.02 2.44 16 10 C 0.04 1.01 6.16 72.03 0.44 1.45 16 11 O -0.39 -9.24 10.85 -136.00 -1.48 -10.71 16 12 C 0.01 0.24 7.05 72.03 0.51 0.74 16 13 C 0.02 0.32 7.05 72.03 0.51 0.83 16 14 O -0.38 -10.11 10.03 -122.90 -1.23 -11.34 16 15 C 0.08 2.23 5.17 86.53 0.45 2.68 16 16 C 0.17 5.59 3.09 45.88 0.14 5.73 16 17 H 0.07 2.42 7.82 -2.39 -0.02 2.40 16 18 N -0.74 -29.92 4.28 -318.74 -1.36 -31.28 16 19 C -0.22 -11.50 10.45 84.03 0.88 -10.62 16 20 H 0.07 3.65 8.06 -2.91 -0.02 3.63 16 21 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 22 N -0.98 -60.01 13.97 21.65 0.30 -59.71 16 23 Si 0.94 42.67 27.74 68.60 1.90 44.58 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.24 -9.78 6.48 99.48 0.64 -9.13 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 30 H 0.05 1.32 6.21 -2.39 -0.01 1.30 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.97 8.02 -2.39 -0.02 1.95 16 34 H 0.09 2.26 7.77 -2.39 -0.02 2.24 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 2.91 5.88 -2.39 -0.01 2.89 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 2.27 7.18 -2.39 -0.02 2.26 16 42 H 0.08 2.20 7.40 -2.39 -0.02 2.18 16 43 H 0.37 14.57 3.44 -92.71 -0.32 14.25 16 44 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -69.24 344.24 2.19 -67.05 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.61 Total: 28.82 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.76 Total: 13.38 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.64 Total: -110.70 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.44 Total: -43.13 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.90 Total: 44.58 kcal Total: -69.24 2.19 -67.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995496998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.051 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds