Wall clock time and date at job start Fri Apr 10 2020 17:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47312 * 300.00544 * 3 2 1 6 6 H 1.48502 * 109.46861 * 60.00785 * 3 2 1 7 7 C 1.38807 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00121 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00090 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.49710 * 324.93094 * 10 9 7 12 12 C 1.53039 * 109.49983 * 204.83129 * 10 9 7 13 13 C 1.53037 * 109.54101 * 178.68190 * 12 10 9 14 14 C 1.53196 * 109.31040 * 61.36876 * 13 12 10 15 15 N 1.46922 * 108.77606 * 305.36550 * 14 13 12 16 16 C 1.34778 * 120.63238 * 233.63495 * 15 14 13 17 17 O 1.21278 * 120.00150 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99786 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47079 * 180.02562 * 18 16 15 20 20 O 1.42967 * 109.46701 * 294.99367 * 19 18 16 21 21 C 1.43093 * 113.76909 * 181.20631 * 20 19 18 22 22 C 1.53262 * 108.94048 * 57.97343 * 21 20 19 23 23 C 1.53257 * 108.84319 * 305.47537 * 22 21 20 24 24 O 1.42968 * 109.47161 * 174.99855 * 19 18 16 25 25 C 1.46931 * 118.74046 * 53.60492 * 15 14 13 26 26 H 0.97000 * 119.99947 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99906 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46006 * 58.65898 * 12 10 9 29 29 H 1.09006 * 109.46060 * 298.70913 * 12 10 9 30 30 H 1.08999 * 109.50017 * 301.41283 * 13 12 10 31 31 H 1.09004 * 109.49998 * 181.31881 * 13 12 10 32 32 H 1.08999 * 109.58846 * 65.15273 * 14 13 12 33 33 H 1.09003 * 109.58174 * 185.43556 * 14 13 12 34 34 H 1.09007 * 109.46793 * 300.00224 * 18 16 15 35 35 H 1.09001 * 109.47068 * 60.00015 * 18 16 15 36 36 H 1.08996 * 109.47760 * 54.99635 * 19 18 16 37 37 H 1.09000 * 109.55781 * 298.13727 * 21 20 19 38 38 H 1.08998 * 109.65070 * 177.86586 * 21 20 19 39 39 H 1.09001 * 109.56896 * 185.66760 * 22 21 20 40 40 H 1.08995 * 109.68282 * 65.34821 * 22 21 20 41 41 H 1.08999 * 109.56279 * 294.68248 * 23 22 21 42 42 H 1.09004 * 109.64578 * 174.41655 * 23 22 21 43 43 H 1.09000 * 109.57916 * 66.17927 * 25 15 14 44 44 H 1.08992 * 109.58752 * 186.46132 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0027 11 1 2.9682 -3.5508 -0.5930 12 6 1.1796 -4.7532 -0.6095 13 6 1.9558 -6.0718 -0.6413 14 6 2.3193 -6.4803 0.7897 15 7 3.0399 -5.3712 1.4294 16 6 4.2445 -5.5729 1.9994 17 8 4.8295 -4.6491 2.5239 18 6 4.8644 -6.9465 1.9849 19 6 6.2200 -6.9017 2.6929 20 8 7.1182 -6.0736 1.9504 21 6 8.4284 -5.9889 2.5194 22 6 9.0168 -7.4001 2.6258 23 6 8.0404 -8.2857 3.4075 24 8 6.7549 -8.2245 2.7822 25 6 2.4228 -4.0378 1.4355 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 0.8983 -4.4729 -1.6246 29 1 0.2811 -4.8751 -0.0045 30 1 2.8668 -5.9437 -1.2258 31 1 1.3379 -6.8468 -1.0950 32 1 1.4099 -6.6967 1.3502 33 1 2.9539 -7.3662 0.7667 34 1 4.2080 -7.6468 2.5015 35 1 5.0032 -7.2716 0.9538 36 1 6.0932 -6.4927 3.6952 37 1 8.3670 -5.5433 3.5123 38 1 9.0655 -5.3750 1.8828 39 1 9.9720 -7.3589 3.1493 40 1 9.1648 -7.8123 1.6277 41 1 7.9643 -7.9273 4.4341 42 1 8.3982 -9.3154 3.4062 43 1 1.5218 -4.0551 2.0486 44 1 3.1268 -3.3112 1.8410 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999007280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:45 Heat of formation + Delta-G solvation = -119.444623 kcal Electronic energy + Delta-G solvation = -25104.997344 eV Core-core repulsion = 21443.468434 eV Total energy + Delta-G solvation = -3661.528909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39210 -39.52862 -37.24988 -35.79462 -34.45602 -33.38626 -32.27378 -31.20006 -30.33597 -28.11940 -26.18784 -25.35452 -24.04550 -23.25672 -21.85207 -21.38357 -20.13953 -18.73302 -17.75062 -17.06293 -16.95724 -16.55443 -16.10006 -15.55835 -15.07005 -14.94220 -14.90404 -14.50772 -14.14122 -13.84274 -13.48907 -13.43880 -13.20166 -13.09209 -12.79677 -12.42312 -12.27270 -11.96924 -11.76410 -11.39656 -11.31671 -11.23438 -10.98178 -10.83009 -10.62438 -10.54623 -10.21069 -10.14560 -9.82440 -9.78428 -9.72018 -9.48676 -9.04582 -8.29211 -6.96976 -5.76450 -3.05956 2.85707 2.96318 3.46151 3.51880 3.52585 3.55239 3.61731 4.44990 4.46636 4.60181 4.60589 4.71317 4.81567 4.89949 5.01908 5.05991 5.12723 5.15200 5.28446 5.31156 5.44051 5.50291 5.51967 5.57739 5.59302 5.69325 5.76864 5.82842 5.96403 6.07802 6.20264 6.24889 6.38633 6.53006 6.63400 6.78137 6.86966 7.02389 7.05431 7.70197 7.75428 8.41039 8.45104 9.53827 10.08025 10.43349 11.45973 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003598 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.845094 B = 7779.510604 C = 8954.763030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.106 3.894 15 N -0.607 5.607 16 C 0.516 3.484 17 O -0.532 6.532 18 C -0.127 4.127 19 C 0.264 3.736 20 O -0.375 6.375 21 C 0.058 3.942 22 C -0.193 4.193 23 C 0.060 3.940 24 O -0.397 6.397 25 C 0.094 3.906 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.012 -20.972 4.688 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.341 5.341 16 C 0.303 3.697 17 O -0.408 6.408 18 C -0.167 4.167 19 C 0.169 3.831 20 O -0.295 6.295 21 C -0.019 4.019 22 C -0.231 4.231 23 C -0.017 4.017 24 O -0.318 6.318 25 C -0.030 4.030 26 H 0.064 0.936 27 H 0.219 0.781 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.279 -20.355 4.718 24.236 hybrid contribution 0.348 0.954 0.337 1.070 sum 12.626 -19.402 5.055 23.694 Atomic orbital electron populations 1.69672 1.05113 1.25605 1.57727 1.24740 0.95516 0.97737 1.02771 0.86119 0.78995 0.84016 0.77142 1.20419 1.21865 1.21810 1.19333 0.91161 0.83978 1.42657 0.90973 1.42387 1.05793 0.99624 1.88123 1.20495 0.94895 0.86406 0.92513 0.93118 1.21820 0.98665 0.94142 1.01797 1.21887 1.00962 0.98193 0.95889 1.21752 0.96981 0.89056 0.93965 1.48240 1.18616 1.11162 1.56092 1.20093 0.80999 0.89818 0.78771 1.90726 1.61049 1.44106 1.44944 1.21503 0.93956 0.96987 1.04212 1.22897 0.87961 0.77465 0.94816 1.88209 1.21565 1.67610 1.52077 1.22609 0.84257 0.95603 0.99442 1.22811 0.99954 0.97594 1.02769 1.22619 0.82802 1.01099 0.95179 1.88042 1.33941 1.29105 1.80706 1.22758 0.97713 0.81612 1.00965 0.93551 0.78098 0.91438 0.92054 0.91525 0.90995 0.91356 0.90235 0.86961 0.87373 0.91792 0.92763 0.88313 0.89810 0.90020 0.92816 0.88336 0.92151 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.72 -18.08 5.13 -53.31 -0.27 -18.36 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 12 C -0.13 -1.99 5.35 -26.69 -0.14 -2.13 16 13 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 14 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 15 N -0.61 -9.40 2.97 -172.76 -0.51 -9.92 16 16 C 0.52 8.34 7.58 -10.98 -0.08 8.25 16 17 O -0.53 -10.84 14.83 -8.85 -0.13 -10.98 16 18 C -0.13 -1.51 4.13 -27.88 -0.12 -1.63 16 19 C 0.26 3.41 2.80 37.16 0.10 3.51 16 20 O -0.37 -5.47 9.77 -64.75 -0.63 -6.10 16 21 C 0.06 0.62 6.96 37.29 0.26 0.88 16 22 C -0.19 -1.56 6.35 -26.46 -0.17 -1.73 16 23 C 0.06 0.50 6.96 37.29 0.26 0.76 16 24 O -0.40 -4.54 10.54 -59.03 -0.62 -5.16 16 25 C 0.09 1.81 6.02 -3.71 -0.02 1.79 16 26 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.68 5.95 -51.93 -0.31 0.37 16 34 H 0.11 1.03 7.94 -51.92 -0.41 0.61 16 35 H 0.11 1.18 7.69 -51.93 -0.40 0.78 16 36 H 0.06 0.86 7.96 -51.93 -0.41 0.44 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 2.05 7.00 -51.93 -0.36 1.69 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -34.20 350.35 -8.98 -43.19 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.25 Total: 6.73 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.54 Total: 4.96 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.06 Total: -55.83 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.39 Total: -22.24 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.20 -8.98 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999007280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.259 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds