Wall clock time and date at job start Fri Apr 10 2020 17:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47312 * 300.00544 * 3 2 1 6 6 H 1.48502 * 109.46861 * 60.00785 * 3 2 1 7 7 C 1.38807 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00121 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00090 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.49710 * 324.93094 * 10 9 7 12 12 C 1.53039 * 109.49983 * 204.83129 * 10 9 7 13 13 C 1.53037 * 109.54101 * 178.68190 * 12 10 9 14 14 C 1.53196 * 109.31040 * 61.36876 * 13 12 10 15 15 N 1.46922 * 108.77606 * 305.36550 * 14 13 12 16 16 C 1.34778 * 120.63238 * 233.63495 * 15 14 13 17 17 O 1.21278 * 120.00150 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99786 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47079 * 180.02562 * 18 16 15 20 20 O 1.42967 * 109.46701 * 294.99367 * 19 18 16 21 21 C 1.43093 * 113.76909 * 181.20631 * 20 19 18 22 22 C 1.53262 * 108.94048 * 57.97343 * 21 20 19 23 23 C 1.53257 * 108.84319 * 305.47537 * 22 21 20 24 24 O 1.42968 * 109.47161 * 174.99855 * 19 18 16 25 25 C 1.46931 * 118.74046 * 53.60492 * 15 14 13 26 26 H 0.97000 * 119.99947 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99906 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46006 * 58.65898 * 12 10 9 29 29 H 1.09006 * 109.46060 * 298.70913 * 12 10 9 30 30 H 1.08999 * 109.50017 * 301.41283 * 13 12 10 31 31 H 1.09004 * 109.49998 * 181.31881 * 13 12 10 32 32 H 1.08999 * 109.58846 * 65.15273 * 14 13 12 33 33 H 1.09003 * 109.58174 * 185.43556 * 14 13 12 34 34 H 1.09007 * 109.46793 * 300.00224 * 18 16 15 35 35 H 1.09001 * 109.47068 * 60.00015 * 18 16 15 36 36 H 1.08996 * 109.47760 * 54.99635 * 19 18 16 37 37 H 1.09000 * 109.55781 * 298.13727 * 21 20 19 38 38 H 1.08998 * 109.65070 * 177.86586 * 21 20 19 39 39 H 1.09001 * 109.56896 * 185.66760 * 22 21 20 40 40 H 1.08995 * 109.68282 * 65.34821 * 22 21 20 41 41 H 1.08999 * 109.56279 * 294.68248 * 23 22 21 42 42 H 1.09004 * 109.64578 * 174.41655 * 23 22 21 43 43 H 1.09000 * 109.57916 * 66.17927 * 25 15 14 44 44 H 1.08992 * 109.58752 * 186.46132 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0027 11 1 2.9682 -3.5508 -0.5930 12 6 1.1796 -4.7532 -0.6095 13 6 1.9558 -6.0718 -0.6413 14 6 2.3193 -6.4803 0.7897 15 7 3.0399 -5.3712 1.4294 16 6 4.2445 -5.5729 1.9994 17 8 4.8295 -4.6491 2.5239 18 6 4.8644 -6.9465 1.9849 19 6 6.2200 -6.9017 2.6929 20 8 7.1182 -6.0736 1.9504 21 6 8.4284 -5.9889 2.5194 22 6 9.0168 -7.4001 2.6258 23 6 8.0404 -8.2857 3.4075 24 8 6.7549 -8.2245 2.7822 25 6 2.4228 -4.0378 1.4355 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 0.8983 -4.4729 -1.6246 29 1 0.2811 -4.8751 -0.0045 30 1 2.8668 -5.9437 -1.2258 31 1 1.3379 -6.8468 -1.0950 32 1 1.4099 -6.6967 1.3502 33 1 2.9539 -7.3662 0.7667 34 1 4.2080 -7.6468 2.5015 35 1 5.0032 -7.2716 0.9538 36 1 6.0932 -6.4927 3.6952 37 1 8.3670 -5.5433 3.5123 38 1 9.0655 -5.3750 1.8828 39 1 9.9720 -7.3589 3.1493 40 1 9.1648 -7.8123 1.6277 41 1 7.9643 -7.9273 4.4341 42 1 8.3982 -9.3154 3.4062 43 1 1.5218 -4.0551 2.0486 44 1 3.1268 -3.3112 1.8410 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999007280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:44 Heat of formation + Delta-G solvation = -143.451079 kcal Electronic energy + Delta-G solvation = -25106.038342 eV Core-core repulsion = 21443.468434 eV Total energy + Delta-G solvation = -3662.569907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46761 -40.60463 -38.65355 -36.68679 -36.20729 -34.32022 -33.82373 -32.71863 -31.46179 -29.75284 -26.94760 -26.61005 -25.88047 -24.39309 -23.22794 -22.16184 -21.59062 -19.98711 -19.13259 -18.74721 -17.97961 -17.45883 -17.23468 -16.67993 -16.59447 -16.12129 -15.77370 -15.71781 -15.55350 -15.40179 -15.15237 -14.58368 -14.30195 -14.13554 -13.94832 -13.79456 -13.63243 -13.10579 -13.04887 -12.91955 -12.50369 -12.42621 -12.21199 -12.15435 -12.09229 -11.94718 -11.87427 -11.64476 -11.33297 -11.12898 -11.00814 -10.81312 -10.68500 -9.71814 -9.01571 -8.00167 -5.29188 1.42761 1.43826 1.54202 1.62777 1.85764 2.51582 2.65138 2.66900 3.33027 3.56140 3.74726 3.77630 3.78000 3.82817 3.96679 4.06923 4.10172 4.21578 4.28254 4.35485 4.39645 4.41108 4.43378 4.49343 4.62610 4.69544 4.79388 4.81668 4.84380 4.90316 4.94059 5.07445 5.10417 5.16783 5.39883 5.43572 5.48935 5.59898 5.82677 6.15114 6.23155 6.48356 7.19407 7.29533 8.01935 8.27461 9.22723 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003598 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.845094 B = 7779.510604 C = 8954.763030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.585 6.585 18 C -0.115 4.115 19 C 0.263 3.737 20 O -0.408 6.408 21 C 0.044 3.956 22 C -0.184 4.184 23 C 0.049 3.951 24 O -0.401 6.401 25 C 0.109 3.891 26 H 0.253 0.747 27 H 0.378 0.622 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.683 -24.024 4.547 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.046 0.954 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.022 4.022 15 N -0.339 5.339 16 C 0.299 3.701 17 O -0.466 6.466 18 C -0.154 4.154 19 C 0.167 3.833 20 O -0.329 6.329 21 C -0.032 4.032 22 C -0.221 4.221 23 C -0.027 4.027 24 O -0.322 6.322 25 C -0.017 4.017 26 H 0.062 0.938 27 H 0.210 0.790 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.167 0.833 35 H 0.144 0.856 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.077 0.923 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.969 -23.484 4.567 27.213 hybrid contribution 0.206 1.846 0.403 1.901 sum 13.175 -21.637 4.969 25.816 Atomic orbital electron populations 1.69794 1.06276 1.26118 1.59174 1.25472 0.96410 1.00755 1.03390 0.85162 0.77954 0.80171 0.77032 1.19965 1.21336 1.21710 1.19539 0.90969 0.85560 1.41568 0.91908 1.42518 1.05525 1.00629 1.88325 1.20659 0.94545 0.86115 0.92994 0.95423 1.21740 0.98495 0.94584 1.00828 1.21886 1.00805 0.96706 0.96689 1.22163 0.98277 0.88537 0.93188 1.48284 1.18786 1.10586 1.56220 1.20916 0.80577 0.91102 0.77550 1.90703 1.62417 1.46229 1.47211 1.21507 0.93819 0.94320 1.05756 1.22831 0.88313 0.77993 0.94152 1.88163 1.23224 1.68435 1.53105 1.22848 0.83278 0.97783 0.99249 1.22752 1.00898 0.95408 1.03060 1.22939 0.81651 1.02736 0.95352 1.88010 1.35360 1.27785 1.81094 1.22161 0.96559 0.83314 0.99649 0.93788 0.78975 0.92210 0.91347 0.92014 0.86952 0.89357 0.86214 0.83317 0.85562 0.93220 0.93030 0.87946 0.87105 0.90244 0.92107 0.85721 0.92279 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.67 13.06 21.65 0.28 -59.39 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.97 48.23 29.55 68.60 2.03 50.25 16 4 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.24 -14.32 9.93 84.03 0.83 -13.49 16 8 H 0.06 3.72 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -38.01 5.13 -322.59 -1.65 -39.66 16 10 C 0.17 6.89 2.92 45.07 0.13 7.02 16 11 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 12 C -0.12 -3.59 5.35 30.62 0.16 -3.43 16 13 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 14 C 0.10 1.86 6.34 86.36 0.55 2.41 16 15 N -0.61 -18.15 2.97 -818.89 -2.43 -20.58 16 16 C 0.51 16.21 7.58 87.66 0.66 16.88 16 17 O -0.59 -24.88 14.83 10.76 0.16 -24.72 16 18 C -0.11 -2.45 4.13 29.85 0.12 -2.33 16 19 C 0.26 6.48 2.80 71.98 0.20 6.69 16 20 O -0.41 -11.91 9.77 -120.75 -1.18 -13.09 16 21 C 0.04 0.94 6.96 72.07 0.50 1.44 16 22 C -0.18 -2.59 6.35 30.77 0.20 -2.40 16 23 C 0.05 0.70 6.96 72.07 0.50 1.20 16 24 O -0.40 -8.22 10.54 -126.22 -1.33 -9.55 16 25 C 0.11 4.33 6.02 86.36 0.52 4.85 16 26 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.38 20.52 7.80 -92.71 -0.72 19.80 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.37 5.95 -2.39 -0.01 1.35 16 34 H 0.15 2.07 7.94 -2.38 -0.02 2.05 16 35 H 0.13 2.29 7.69 -2.39 -0.02 2.27 16 36 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.04 2.20 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -78.79 350.35 1.17 -77.61 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.26 Total: 26.13 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.04 Total: 12.98 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -3.80 Total: -119.63 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -2.35 Total: -47.35 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -78.79 1.17 -77.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999007280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.836 kcal (2) G-P(sol) polarization free energy of solvation -78.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds