Wall clock time and date at job start Fri Apr 10 2020 17:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49644 * 34.99840 * 10 9 7 12 12 C 1.53038 * 109.50091 * 155.06253 * 10 9 7 13 13 C 1.53038 * 109.54199 * 181.31360 * 12 10 9 14 14 C 1.53198 * 109.31265 * 298.63895 * 13 12 10 15 15 N 1.46928 * 108.77528 * 54.63209 * 14 13 12 16 16 C 1.34777 * 120.63206 * 126.39232 * 15 14 13 17 17 O 1.21276 * 120.00198 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99773 * 359.97438 * 16 15 14 19 19 C 1.53000 * 109.47103 * 180.02562 * 18 16 15 20 20 O 1.42962 * 109.46780 * 295.00167 * 19 18 16 21 21 C 1.43096 * 113.76436 * 181.20727 * 20 19 18 22 22 C 1.53255 * 108.94581 * 57.96784 * 21 20 19 23 23 C 1.53262 * 108.84454 * 305.47532 * 22 21 20 24 24 O 1.42958 * 109.46970 * 175.00004 * 19 18 16 25 25 C 1.46937 * 118.76292 * 306.41208 * 15 14 13 26 26 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.45957 * 301.33817 * 12 10 9 29 29 H 1.09002 * 109.45645 * 61.30660 * 12 10 9 30 30 H 1.08999 * 109.49542 * 58.58349 * 13 12 10 31 31 H 1.08994 * 109.50294 * 178.65422 * 13 12 10 32 32 H 1.09002 * 109.58764 * 174.41661 * 14 13 12 33 33 H 1.08995 * 109.58269 * 294.70277 * 14 13 12 34 34 H 1.09007 * 109.46947 * 299.99840 * 18 16 15 35 35 H 1.08997 * 109.46810 * 60.00025 * 18 16 15 36 36 H 1.09003 * 109.46716 * 54.99880 * 19 18 16 37 37 H 1.08999 * 109.55813 * 298.12429 * 21 20 19 38 38 H 1.09003 * 109.64430 * 177.86080 * 21 20 19 39 39 H 1.09004 * 109.57596 * 185.67056 * 22 21 20 40 40 H 1.09001 * 109.57341 * 65.28611 * 22 21 20 41 41 H 1.09004 * 109.55743 * 294.68497 * 23 22 21 42 42 H 1.09000 * 109.64663 * 174.41675 * 23 22 21 43 43 H 1.08998 * 109.55844 * 293.78539 * 25 15 14 44 44 H 1.08999 * 109.60997 * 173.36254 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 1 3.5626 -3.2082 -0.5905 12 6 5.4979 -2.2607 -0.6196 13 6 6.2517 -3.5922 -0.6501 14 6 6.4306 -4.1059 0.7821 15 7 5.1129 -4.1731 1.4285 16 6 4.6884 -5.3148 2.0053 17 8 3.5988 -5.3573 2.5361 18 6 5.5677 -6.5386 1.9906 19 6 4.8544 -7.6877 2.7060 20 8 4.6873 -7.3585 4.0872 21 6 4.0510 -8.3869 4.8522 22 6 4.8748 -9.6741 4.7379 23 6 5.0643 -10.0105 3.2547 24 8 5.6363 -8.8790 2.5912 25 6 4.2661 -2.9722 1.4342 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0099 28 1 5.3907 -1.8807 -1.6356 29 1 6.0557 -1.5414 -0.0199 30 1 5.6823 -4.3194 -1.2289 31 1 7.2292 -3.4465 -1.1096 32 1 6.8781 -5.0996 0.7606 33 1 7.0775 -3.4257 1.3360 34 1 5.7740 -6.8254 0.9594 35 1 6.5052 -6.3185 2.5011 36 1 3.8775 -7.8488 2.2501 37 1 3.0468 -8.5607 4.4657 38 1 3.9921 -8.0828 5.8973 39 1 4.3481 -10.4900 5.2329 40 1 5.8480 -9.5276 5.2064 41 1 4.0985 -10.2459 2.8076 42 1 5.7309 -10.8672 3.1555 43 1 4.7343 -2.1985 2.0426 44 1 3.2858 -3.2178 1.8425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999007282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:47 Heat of formation + Delta-G solvation = -114.958550 kcal Electronic energy + Delta-G solvation = -25081.729056 eV Core-core repulsion = 21420.394677 eV Total energy + Delta-G solvation = -3661.334379 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41372 -39.57202 -37.35044 -35.80192 -34.60996 -33.39777 -32.31851 -31.34270 -30.46156 -28.59528 -26.19236 -25.41828 -24.00682 -23.20128 -21.72328 -21.37911 -20.29428 -18.81396 -17.74320 -17.54927 -16.97884 -16.58970 -16.05784 -15.58897 -15.22010 -14.95583 -14.80899 -14.59352 -14.26745 -14.05042 -13.49868 -13.46163 -13.09349 -13.01380 -12.90945 -12.55361 -12.47003 -12.01342 -11.77629 -11.65087 -11.32085 -11.27651 -11.16049 -10.91985 -10.71793 -10.63042 -10.29995 -10.21828 -9.88260 -9.82275 -9.60821 -9.53163 -9.08229 -8.35860 -7.28389 -5.76307 -3.13620 2.84279 2.92656 3.37510 3.39650 3.45418 3.50411 3.58423 4.44699 4.46169 4.58108 4.58747 4.69350 4.80280 4.83651 4.97119 5.02116 5.06263 5.15740 5.18444 5.29757 5.37143 5.44468 5.47059 5.48852 5.53875 5.59869 5.71712 5.76155 5.82775 5.92421 6.04301 6.09053 6.25505 6.40404 6.62736 6.68709 6.75181 6.92964 7.01326 7.65020 7.99747 8.40114 8.43667 9.19675 9.91333 10.09873 11.41780 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.003371 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.759931 B = 8304.189196 C = 9113.175659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.743 5.743 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.608 5.608 16 C 0.517 3.483 17 O -0.528 6.528 18 C -0.126 4.126 19 C 0.264 3.736 20 O -0.376 6.376 21 C 0.057 3.943 22 C -0.193 4.193 23 C 0.059 3.941 24 O -0.397 6.397 25 C 0.094 3.906 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 -18.478 4.668 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.062 3.938 11 H 0.077 0.923 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.343 5.343 16 C 0.304 3.696 17 O -0.404 6.404 18 C -0.166 4.166 19 C 0.168 3.832 20 O -0.296 6.296 21 C -0.019 4.019 22 C -0.231 4.231 23 C -0.017 4.017 24 O -0.318 6.318 25 C -0.030 4.030 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.107 -18.360 4.921 24.915 hybrid contribution 0.305 0.993 0.134 1.047 sum 16.412 -17.367 5.054 24.424 Atomic orbital electron populations 1.69705 1.05130 1.25850 1.57173 1.24684 0.95226 0.97206 1.01818 0.86549 0.79226 0.85002 0.77723 1.21079 1.21724 1.20294 1.19103 0.80403 0.94856 1.43354 0.89077 1.42731 1.04127 1.01750 1.89877 1.20469 0.90947 0.89468 0.92899 0.92278 1.21863 0.96738 0.96486 1.01733 1.21877 1.00793 0.98184 0.96010 1.21751 0.84537 1.01800 0.93685 1.48197 1.18241 1.11881 1.55952 1.20098 0.87039 0.83969 0.78538 1.90745 1.21851 1.83794 1.43972 1.21497 1.00329 0.92197 1.02577 1.22905 0.93341 0.83936 0.83006 1.88186 1.79715 1.40958 1.20769 1.22611 0.94960 0.87146 0.97214 1.22813 1.02636 0.99522 0.98137 1.22627 0.99150 0.88714 0.91239 1.88038 1.50531 1.18852 1.74367 1.22674 0.95665 0.84270 1.00424 0.93011 0.80483 0.91333 0.92147 0.91358 0.90887 0.90118 0.91383 0.86823 0.87505 0.91631 0.92662 0.88361 0.89773 0.90082 0.92723 0.88325 0.92259 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.09 27.73 -169.99 -4.71 17.37 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.46 6.53 56.52 0.37 -6.10 16 7 C -0.25 -7.04 10.41 -15.06 -0.16 -7.19 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 9 N -0.74 -17.45 4.93 -53.31 -0.26 -17.71 16 10 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 C -0.13 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 14 C 0.11 1.13 6.34 -3.71 -0.02 1.10 16 15 N -0.61 -9.14 2.97 -172.76 -0.51 -9.65 16 16 C 0.52 8.23 7.58 -10.98 -0.08 8.15 16 17 O -0.53 -10.76 14.83 -8.86 -0.13 -10.89 16 18 C -0.13 -1.48 4.13 -27.88 -0.12 -1.59 16 19 C 0.26 3.38 2.80 37.16 0.10 3.49 16 20 O -0.38 -5.36 9.77 -64.76 -0.63 -5.99 16 21 C 0.06 0.60 6.96 37.29 0.26 0.86 16 22 C -0.19 -1.53 6.35 -26.46 -0.17 -1.69 16 23 C 0.06 0.50 6.96 37.29 0.26 0.76 16 24 O -0.40 -4.52 10.54 -59.03 -0.62 -5.14 16 25 C 0.09 1.75 6.02 -3.71 -0.02 1.73 16 26 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 27 H 0.36 8.26 5.67 -40.82 -0.23 8.03 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.05 7.69 -51.92 -0.40 0.65 16 35 H 0.11 1.10 7.94 -51.93 -0.41 0.69 16 36 H 0.07 0.90 7.96 -51.93 -0.41 0.48 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 2.14 7.01 -51.93 -0.36 1.77 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -35.23 347.23 -8.62 -43.85 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.21 Total: 6.53 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.54 Total: 5.21 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.00 Total: -56.17 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.39 Total: -22.02 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.23 -8.62 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999007282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.109 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds