Wall clock time and date at job start Fri Apr 10 2020 17:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46926 * 269.99676 * 3 2 1 5 5 H 1.48498 * 109.46924 * 29.99529 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99653 * 3 2 1 7 7 C 1.38816 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00227 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99969 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99680 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49835 * 35.06735 * 10 9 7 12 12 C 1.53046 * 109.49317 * 155.16317 * 10 9 7 13 13 C 1.53041 * 109.53331 * 181.31534 * 12 10 9 14 14 C 1.53618 * 109.24419 * 298.50802 * 13 12 10 15 15 N 1.46937 * 108.54173 * 54.86011 * 14 13 12 16 16 C 1.34772 * 120.63162 * 126.36609 * 15 14 13 17 17 O 1.21278 * 120.00189 * 179.72090 * 16 15 14 18 18 C 1.50700 * 120.00003 * 359.72195 * 16 15 14 19 19 O 1.42896 * 109.47531 * 179.97438 * 18 16 15 20 20 C 1.42898 * 114.00569 * 179.97438 * 19 18 16 21 21 H 1.09000 * 110.54079 * 328.84157 * 20 19 18 22 22 C 1.54807 * 110.49229 * 206.22403 * 20 19 18 23 23 C 1.54994 * 102.09494 * 220.44749 * 22 20 19 24 24 O 1.44380 * 103.49110 * 37.01885 * 23 22 20 25 25 C 1.43739 * 106.97820 * 319.94499 * 24 23 22 26 26 C 1.46928 * 118.73552 * 306.09354 * 15 14 13 27 27 H 0.96996 * 120.00120 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00013 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46043 * 301.33483 * 12 10 9 30 30 H 1.08999 * 109.45798 * 61.31262 * 12 10 9 31 31 H 1.08999 * 109.49504 * 58.59120 * 13 12 10 32 32 H 1.09004 * 109.49345 * 178.65115 * 13 12 10 33 33 H 1.08994 * 109.74296 * 295.12195 * 14 13 12 34 34 H 1.09001 * 109.66386 * 174.54889 * 14 13 12 35 35 H 1.09008 * 109.47577 * 59.99847 * 18 16 15 36 36 H 1.09000 * 109.47184 * 300.00020 * 18 16 15 37 37 H 1.09005 * 110.90346 * 338.64483 * 22 20 19 38 38 H 1.09000 * 110.90998 * 102.24219 * 22 20 19 39 39 H 1.08998 * 110.61564 * 278.52047 * 23 22 20 40 40 H 1.08994 * 110.75808 * 155.58946 * 23 22 20 41 41 H 1.09004 * 109.87903 * 267.08704 * 25 24 23 42 42 H 1.08997 * 109.88645 * 145.93327 * 25 24 23 43 43 H 1.09001 * 109.58223 * 173.64932 * 26 15 14 44 44 H 1.08997 * 109.58726 * 293.92814 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5659 -3.2063 -0.5896 12 6 5.5016 -2.2584 -0.6043 13 6 6.2555 -3.5899 -0.6349 14 6 6.4282 -4.1071 0.8013 15 7 5.1043 -4.1781 1.4347 16 6 4.6765 -5.3217 2.0053 17 8 3.5837 -5.3661 2.5293 18 6 5.5561 -6.5453 1.9921 19 8 4.8866 -7.6204 2.6538 20 6 5.6384 -8.8349 2.6966 21 1 6.2778 -8.9201 1.8179 22 6 4.6914 -10.0553 2.7980 23 6 5.4378 -10.9625 3.8090 24 8 6.0057 -10.0243 4.7480 25 6 6.4809 -8.9025 3.9852 26 6 4.2582 -2.9769 1.4396 27 1 -0.4850 0.8400 -0.0004 28 1 3.8647 -0.3621 0.0014 29 1 5.4006 -1.8749 -1.6197 30 1 6.0558 -1.5414 0.0013 31 1 5.6896 -4.3150 -1.2198 32 1 7.2359 -3.4426 -1.0881 33 1 7.0663 -3.4256 1.3637 34 1 6.8778 -5.0999 0.7821 35 1 6.4906 -6.3267 2.5089 36 1 5.7687 -6.8288 0.9613 37 1 3.7166 -9.7599 3.1863 38 1 4.5900 -10.5503 1.8322 39 1 6.2238 -11.5285 3.3091 40 1 4.7424 -11.6350 4.3112 41 1 7.5321 -9.0439 3.7338 42 1 6.3552 -7.9842 4.5587 43 1 3.2756 -3.2238 1.8417 44 1 4.7217 -2.2060 2.0551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999151458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:51 Heat of formation + Delta-G solvation = -103.645599 kcal Electronic energy + Delta-G solvation = -24602.156002 eV Core-core repulsion = 20941.312190 eV Total energy + Delta-G solvation = -3660.843812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28833 -39.69638 -37.73735 -36.81109 -34.66471 -32.40490 -31.79675 -31.35067 -29.60607 -28.96917 -27.62400 -24.86381 -23.79555 -23.07042 -21.80399 -21.66492 -20.48793 -19.01413 -17.77041 -17.57330 -17.23686 -16.46515 -16.35328 -15.80863 -15.55358 -15.06531 -14.70750 -14.50593 -14.33071 -13.93194 -13.81998 -13.27039 -13.19209 -12.86986 -12.69799 -12.55713 -12.49273 -12.46802 -11.99913 -11.79679 -11.66711 -11.26473 -11.10731 -10.95873 -10.78181 -10.70166 -10.33039 -10.28455 -9.92829 -9.79457 -9.62280 -9.54533 -9.12060 -8.44251 -7.31517 -5.77945 -3.15795 2.66705 2.72579 3.35514 3.37519 3.43835 3.52172 3.62834 4.10306 4.44251 4.48651 4.56702 4.57872 4.66411 4.76528 4.82320 4.88786 4.94291 5.00590 5.09168 5.13304 5.30579 5.31463 5.34468 5.40836 5.42291 5.50133 5.64895 5.68732 5.76478 5.84703 5.97299 6.02051 6.18390 6.33977 6.42316 6.57088 6.69342 6.78775 6.90397 7.54487 7.97713 8.33016 8.40841 9.17527 9.88954 10.07105 11.40040 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.002938 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.684266 B = 9528.183672 C =10152.401256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.608 5.608 16 C 0.510 3.490 17 O -0.515 6.515 18 C 0.043 3.957 19 O -0.345 6.345 20 C 0.053 3.947 21 H 0.079 0.921 22 C -0.153 4.153 23 C 0.047 3.953 24 O -0.373 6.373 25 C 0.024 3.976 26 C 0.094 3.906 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.207 -18.295 1.762 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.018 4.018 15 N -0.344 5.344 16 C 0.296 3.704 17 O -0.389 6.389 18 C -0.037 4.037 19 O -0.263 6.263 20 C -0.006 4.006 21 H 0.097 0.903 22 C -0.191 4.191 23 C -0.030 4.030 24 O -0.292 6.292 25 C -0.054 4.054 26 C -0.030 4.030 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.147 -18.371 2.355 26.639 hybrid contribution 0.933 1.348 -0.381 1.684 sum 20.080 -17.022 1.973 26.398 Atomic orbital electron populations 1.69705 1.05133 1.25887 1.57004 1.24693 0.95229 0.97221 1.01752 0.86548 0.79194 0.85009 0.77723 1.21064 1.21694 1.20323 1.19103 0.80361 0.94890 1.43522 0.89040 1.42732 1.04159 1.01699 1.89835 1.20464 0.90933 0.89530 0.92835 0.92202 1.21868 0.96716 0.96395 1.01855 1.21950 1.00823 0.98294 0.95778 1.21850 0.84349 1.01469 0.94093 1.48203 1.17954 1.11603 1.56624 1.20103 0.87358 0.83778 0.79201 1.90765 1.21219 1.83418 1.43488 1.22376 0.95442 0.87776 0.98081 1.88153 1.41949 1.18588 1.77616 1.23607 0.93547 0.85784 0.97613 0.90336 1.23227 1.00804 0.94104 1.00917 1.23556 0.96535 0.92365 0.90510 1.88914 1.79210 1.30234 1.30796 1.23774 0.97059 0.91363 0.93185 1.22722 0.95716 0.83981 1.00598 0.92970 0.80456 0.91236 0.92086 0.91308 0.90866 0.91150 0.90539 0.90499 0.90225 0.88640 0.89322 0.91982 0.88402 0.91788 0.88772 0.88603 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.89 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.25 -7.04 10.41 -15.06 -0.16 -7.20 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.74 -17.22 4.93 -53.31 -0.26 -17.48 16 10 C 0.17 3.24 2.92 -67.81 -0.20 3.04 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 C -0.13 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C -0.13 -1.31 6.10 -26.39 -0.16 -1.47 16 14 C 0.11 1.02 6.37 -3.48 -0.02 1.00 16 15 N -0.61 -8.78 2.97 -172.50 -0.51 -9.29 16 16 C 0.51 8.06 7.77 -10.99 -0.09 7.97 16 17 O -0.51 -10.95 15.91 -14.35 -0.23 -11.18 16 18 C 0.04 0.46 4.63 36.01 0.17 0.63 16 19 O -0.35 -4.44 9.49 -55.14 -0.52 -4.97 16 20 C 0.05 0.47 3.50 -25.20 -0.09 0.38 16 21 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 22 C -0.15 -1.25 6.90 -24.73 -0.17 -1.42 16 23 C 0.05 0.35 7.72 38.21 0.29 0.64 16 24 O -0.37 -3.99 11.52 -35.23 -0.41 -4.40 16 25 C 0.02 0.21 7.52 37.74 0.28 0.49 16 26 C 0.09 1.71 6.01 -3.71 -0.02 1.69 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 28 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 35 H 0.08 0.60 7.93 -51.92 -0.41 0.19 16 36 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.93 7.97 -51.93 -0.41 0.51 16 43 H 0.10 2.13 7.01 -51.93 -0.36 1.77 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -36.35 351.95 -8.16 -44.51 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.19 Total: 5.08 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.40 Total: 3.93 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.00 Total: -55.49 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.16 Total: -20.54 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.35 -8.16 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999151458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.137 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds