Wall clock time and date at job start Fri Apr 10 2020 17:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48500 * 109.47100 * 240.00021 * 3 2 1 5 5 H 1.48504 * 109.46660 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47315 * 119.99221 * 3 2 1 7 7 C 1.38809 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00165 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49672 * 35.06749 * 10 9 7 12 12 C 1.53035 * 109.52476 * 155.14605 * 10 9 7 13 13 C 1.53038 * 109.54175 * 181.33433 * 12 10 9 14 14 C 1.53195 * 109.31078 * 298.63655 * 13 12 10 15 15 N 1.47207 * 108.85456 * 54.64814 * 14 13 12 16 16 C 1.34778 * 120.81118 * 126.33789 * 15 14 13 17 17 O 1.21286 * 119.99664 * 180.14339 * 16 15 14 18 18 C 1.50696 * 120.00030 * 0.14238 * 16 15 14 19 19 O 1.42905 * 109.46808 * 179.97438 * 18 16 15 20 20 C 1.42903 * 113.99721 * 180.02562 * 19 18 16 21 21 H 1.08998 * 110.45944 * 27.39463 * 20 19 18 22 22 C 1.54506 * 110.50950 * 150.00538 * 20 19 18 23 23 C 1.54474 * 104.06630 * 118.64663 * 22 20 19 24 24 O 1.44427 * 104.80508 * 23.97038 * 23 22 20 25 25 C 1.44422 * 105.27224 * 319.49370 * 24 23 22 26 26 C 1.46926 * 118.55531 * 306.47735 * 15 14 13 27 27 H 0.97004 * 120.00053 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99476 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46332 * 301.35898 * 12 10 9 30 30 H 1.09005 * 109.46002 * 61.32472 * 12 10 9 31 31 H 1.09002 * 109.49557 * 58.58503 * 13 12 10 32 32 H 1.09001 * 109.50153 * 178.64977 * 13 12 10 33 33 H 1.08996 * 109.58670 * 174.42176 * 14 13 12 34 34 H 1.09002 * 109.58549 * 294.69988 * 14 13 12 35 35 H 1.08992 * 109.47349 * 300.00085 * 18 16 15 36 36 H 1.09000 * 109.46730 * 60.00487 * 18 16 15 37 37 H 1.09011 * 110.50367 * 237.28590 * 22 20 19 38 38 H 1.08996 * 110.51180 * 359.85125 * 22 20 19 39 39 H 1.09001 * 110.38015 * 142.80698 * 23 22 20 40 40 H 1.09012 * 110.36654 * 265.14368 * 23 22 20 41 41 H 1.09006 * 110.37674 * 281.67765 * 25 24 23 42 42 H 1.09009 * 110.37100 * 159.34570 * 25 24 23 43 43 H 1.09002 * 109.58861 * 293.68122 * 26 15 14 44 44 H 1.08996 * 109.58519 * 173.40013 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9684 -3.5513 0.5909 12 6 1.1805 -4.7541 0.6068 13 6 1.9573 -6.0723 0.6375 14 6 2.3209 -6.4796 -0.7939 15 7 3.0427 -5.3687 -1.4358 16 6 4.2473 -5.5667 -2.0069 17 8 4.8302 -4.6402 -2.5294 18 6 4.8698 -6.9390 -1.9964 19 8 6.1355 -6.8929 -2.6584 20 6 6.8133 -8.1501 -2.7046 21 1 6.0963 -8.9707 -2.6789 22 6 7.6969 -8.2426 -3.9687 23 6 9.1295 -8.4049 -3.4143 24 8 8.9532 -8.9623 -2.0937 25 6 7.8167 -8.2673 -1.5360 26 6 2.4228 -4.0366 -1.4380 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 0.8991 -4.4747 1.6221 30 1 0.2821 -4.8763 0.0017 31 1 2.8685 -5.9441 1.2218 32 1 1.3402 -6.8478 1.0913 33 1 2.9580 -7.3637 -0.7716 34 1 1.4115 -6.6986 -1.3536 35 1 5.0099 -7.2665 -0.9663 36 1 4.2145 -7.6392 -2.5145 37 1 7.4182 -9.1104 -4.5667 38 1 7.6147 -7.3304 -4.5597 39 1 9.7039 -9.0874 -4.0407 40 1 9.6251 -7.4358 -3.3541 41 1 8.1109 -7.2772 -1.1877 42 1 7.3825 -8.8442 -0.7193 43 1 1.5217 -4.0539 -2.0510 44 1 3.1253 -3.3075 -1.8416 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999151459.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:53 Heat of formation + Delta-G solvation = -108.892667 kcal Electronic energy + Delta-G solvation = -24586.704894 eV Core-core repulsion = 20925.633552 eV Total energy + Delta-G solvation = -3661.071342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.24730 -39.65621 -37.68190 -36.78037 -34.51004 -32.37709 -31.74971 -31.21420 -29.41059 -28.70689 -27.42197 -24.76260 -23.93002 -23.26550 -21.93578 -21.52289 -20.40219 -18.93464 -17.68702 -17.19690 -17.10355 -16.43493 -16.30579 -15.80036 -15.42202 -14.98226 -14.82791 -14.34236 -14.14648 -14.02017 -13.58570 -13.46812 -13.38904 -12.80972 -12.78219 -12.51276 -12.40168 -12.24653 -11.92337 -11.64561 -11.38629 -11.12550 -11.05691 -10.83967 -10.70038 -10.61089 -10.26682 -10.24100 -9.86692 -9.85361 -9.75306 -9.51164 -9.08050 -8.38777 -7.01526 -5.79453 -3.09467 2.67761 2.74187 3.45851 3.49827 3.49903 3.52512 3.79301 4.15957 4.36974 4.53240 4.55218 4.57471 4.75067 4.85481 4.87878 4.93777 4.97131 5.04748 5.18746 5.30346 5.36496 5.38616 5.46000 5.48864 5.52203 5.55858 5.59135 5.75284 5.88099 5.98465 6.12458 6.17182 6.29491 6.31783 6.45815 6.64498 6.79221 6.84216 6.99430 7.58762 7.70976 8.34361 8.39215 9.50574 10.03988 10.39221 11.42682 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.003064 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.945350 B = 9136.313213 C =10030.031200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.606 5.606 16 C 0.510 3.490 17 O -0.520 6.520 18 C 0.044 3.956 19 O -0.348 6.348 20 C 0.053 3.947 21 H 0.079 0.921 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.373 6.373 25 C 0.023 3.977 26 C 0.093 3.907 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 -22.697 -3.520 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.342 5.342 16 C 0.296 3.704 17 O -0.395 6.395 18 C -0.036 4.036 19 O -0.266 6.266 20 C -0.005 4.005 21 H 0.097 0.903 22 C -0.194 4.194 23 C -0.031 4.031 24 O -0.292 6.292 25 C -0.055 4.055 26 C -0.031 4.031 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.104 -22.003 -3.777 24.505 hybrid contribution -0.250 0.804 0.007 0.842 sum 9.854 -21.200 -3.770 23.680 Atomic orbital electron populations 1.69650 1.05131 1.25916 1.57367 1.24745 0.95518 0.97772 1.02571 0.86260 0.78563 0.83322 0.78038 1.21065 1.21666 1.21176 1.19230 0.91092 0.83974 1.43215 0.91077 1.42366 1.05794 0.99566 1.88102 1.20487 0.94915 0.86475 0.92396 0.93128 1.21826 0.98698 0.94036 1.01914 1.21886 1.01015 0.98360 0.95646 1.21799 0.97023 0.88683 0.94179 1.48308 1.18421 1.11361 1.56135 1.20098 0.81308 0.89798 0.79201 1.90745 1.61150 1.43618 1.43974 1.22385 0.86491 0.96481 0.98250 1.88116 1.31217 1.29703 1.77551 1.23569 0.94705 0.86796 0.95456 0.90304 1.23028 0.94774 1.04201 0.97348 1.23429 0.96272 0.99371 0.84064 1.89135 1.49241 1.61257 1.29545 1.23976 0.86562 0.98491 0.96440 1.22814 0.97741 0.81406 1.01132 0.93394 0.78053 0.91324 0.91972 0.91533 0.90877 0.90697 0.91115 0.90333 0.90342 0.89708 0.88663 0.88771 0.91696 0.90752 0.88698 0.91970 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.72 -17.73 5.13 -53.31 -0.27 -18.00 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.90 5.35 -26.69 -0.14 -2.04 16 13 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 14 C 0.11 1.09 6.35 -3.56 -0.02 1.07 16 15 N -0.61 -8.99 2.98 -172.54 -0.51 -9.51 16 16 C 0.51 8.09 7.78 -10.99 -0.09 8.00 16 17 O -0.52 -10.92 15.91 -14.36 -0.23 -11.15 16 18 C 0.04 0.48 4.61 36.00 0.17 0.64 16 19 O -0.35 -4.38 9.51 -55.14 -0.52 -4.90 16 20 C 0.05 0.48 3.61 -25.16 -0.09 0.39 16 21 H 0.08 0.54 7.82 -51.93 -0.41 0.14 16 22 C -0.16 -1.26 6.90 -25.17 -0.17 -1.43 16 23 C 0.05 0.37 7.63 37.93 0.29 0.66 16 24 O -0.37 -3.84 11.65 -35.23 -0.41 -4.25 16 25 C 0.02 0.21 7.38 37.93 0.28 0.49 16 26 C 0.09 1.75 6.00 -3.71 -0.02 1.73 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 9.98 7.80 -40.82 -0.32 9.66 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.53 5.97 -51.93 -0.31 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.65 7.70 -51.93 -0.40 0.26 16 36 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 37 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.09 0.86 8.00 -51.93 -0.42 0.44 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -34.46 355.10 -8.54 -43.00 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.24 Total: 5.35 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.41 Total: 3.66 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.06 Total: -54.79 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.16 Total: -20.30 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.46 -8.54 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999151459.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.888 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds