Wall clock time and date at job start Fri Apr 10 2020 17:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99917 * 2 1 4 4 H 1.48503 * 109.46896 * 270.00209 * 3 2 1 5 5 H 1.48504 * 109.47378 * 29.99809 * 3 2 1 6 6 H 1.48497 * 109.47328 * 150.00269 * 3 2 1 7 7 C 1.38812 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99434 * 165.45065 * 7 2 1 9 9 N 1.36933 * 120.00096 * 345.44690 * 7 2 1 10 10 C 1.46922 * 120.63507 * 328.34454 * 9 7 2 11 11 C 1.53185 * 108.89322 * 233.67488 * 10 9 7 12 12 C 1.53036 * 109.31459 * 305.29097 * 11 10 9 13 13 C 1.53043 * 109.53742 * 61.36468 * 12 11 10 14 14 C 1.47213 * 120.80871 * 148.48151 * 9 7 2 15 15 H 1.09001 * 109.56102 * 246.16244 * 14 9 7 16 16 C 1.52998 * 109.65065 * 6.47075 * 14 9 7 17 17 N 1.46495 * 109.47059 * 299.37423 * 16 14 9 18 18 C 1.34779 * 119.99967 * 180.02562 * 17 16 14 19 19 O 1.21285 * 119.99875 * 0.02562 * 18 17 16 20 20 C 1.50692 * 120.00379 * 179.97438 * 18 17 16 21 21 H 1.09005 * 109.52264 * 55.12546 * 20 18 17 22 22 C 1.53144 * 109.52565 * 295.00144 * 20 18 17 23 23 O 1.43070 * 109.15301 * 184.78395 * 22 20 18 24 24 C 1.43079 * 113.59549 * 57.95168 * 23 22 20 25 25 C 1.53145 * 109.14743 * 302.04697 * 24 23 22 26 26 O 1.43070 * 109.52772 * 175.32784 * 20 18 17 27 27 H 0.97002 * 120.00076 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.58625 * 113.81404 * 10 9 7 29 29 H 1.09005 * 109.58421 * 353.53543 * 10 9 7 30 30 H 1.08998 * 109.50019 * 65.24756 * 11 10 9 31 31 H 1.09002 * 109.49809 * 185.34122 * 11 10 9 32 32 H 1.08999 * 109.46370 * 181.38540 * 12 11 10 33 33 H 1.09000 * 109.46132 * 301.36219 * 12 11 10 34 34 H 1.08998 * 109.49221 * 58.58965 * 13 12 11 35 35 H 1.08999 * 109.49958 * 178.65046 * 13 12 11 36 36 H 1.09000 * 109.47294 * 59.37570 * 16 14 9 37 37 H 1.09004 * 109.46346 * 179.37546 * 16 14 9 38 38 H 0.96993 * 120.00465 * 359.97438 * 17 16 14 39 39 H 1.08998 * 109.52474 * 304.68469 * 22 20 18 40 40 H 1.09005 * 109.52564 * 64.81378 * 22 20 18 41 41 H 1.08993 * 109.52395 * 61.94687 * 24 23 22 42 42 H 1.09002 * 109.52769 * 182.14565 * 24 23 22 43 43 H 1.08998 * 109.52320 * 175.21314 * 25 24 23 44 44 H 1.08998 * 109.52847 * 295.40926 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0643 -1.2172 -0.2344 9 7 1.3585 -2.3689 0.2990 10 6 0.2296 -2.3764 1.2393 11 6 0.5027 -3.4125 2.3340 12 6 0.7866 -4.7699 1.6867 13 6 2.0300 -4.6642 0.8006 14 6 1.7742 -3.6423 -0.3115 15 1 0.9846 -4.0070 -0.9684 16 6 3.0565 -3.4313 -1.1191 17 7 2.8087 -2.4545 -2.1824 18 6 3.8020 -2.1100 -3.0258 19 8 4.9008 -2.6090 -2.9046 20 6 3.5471 -1.1057 -4.1200 21 1 3.1534 -0.1865 -3.6862 22 6 2.5322 -1.6782 -5.1138 23 8 2.3801 -0.7672 -6.2065 24 6 3.6036 -0.4876 -6.8936 25 6 4.6184 0.0849 -5.8997 26 8 4.7705 -0.8262 -4.8070 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6861 -2.6379 0.7089 29 1 0.1221 -1.3892 1.6890 30 1 1.3665 -3.1018 2.9217 31 1 -0.3691 -3.4943 2.9832 32 1 0.9571 -5.5145 2.4643 33 1 -0.0677 -5.0683 1.0792 34 1 2.8794 -4.3418 1.4027 35 1 2.2456 -5.6371 0.3588 36 1 3.8431 -3.0610 -0.4616 37 1 3.3676 -4.3781 -1.5606 38 1 1.9297 -2.0563 -2.2800 39 1 2.8893 -2.6381 -5.4869 40 1 1.5722 -1.8151 -4.6160 41 1 3.9967 -1.4075 -7.3264 42 1 3.4192 0.2388 -7.6851 43 1 5.5787 0.2207 -6.3972 44 1 4.2613 1.0448 -5.5267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024339148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:22 Heat of formation + Delta-G solvation = -104.493850 kcal Electronic energy + Delta-G solvation = -26050.781941 eV Core-core repulsion = 22389.901346 eV Total energy + Delta-G solvation = -3660.880595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25015 -38.78374 -37.61577 -35.94988 -34.18283 -33.10336 -31.96233 -30.56495 -29.95042 -28.17691 -26.03182 -25.11452 -24.32424 -22.20043 -21.80006 -20.73517 -19.93655 -19.13519 -17.48579 -16.90799 -16.44069 -16.33005 -15.85673 -15.59604 -15.27203 -14.93686 -14.42957 -14.15230 -13.94866 -13.66125 -13.43892 -13.32098 -12.95102 -12.73057 -12.48439 -12.28319 -12.06632 -11.80086 -11.52807 -11.23481 -11.00219 -10.80971 -10.79379 -10.61728 -10.56380 -10.32432 -10.18404 -10.03031 -9.58339 -9.46507 -9.31883 -9.08986 -8.63168 -8.30039 -6.69511 -5.88972 -3.35285 3.00278 3.19775 3.28424 3.38014 3.42572 3.64692 4.19387 4.39254 4.55133 4.91964 4.96235 5.00238 5.10804 5.18249 5.27525 5.29804 5.43558 5.47356 5.55097 5.61346 5.65826 5.69501 5.76437 5.93705 6.01495 6.11342 6.25838 6.33571 6.38545 6.56744 6.67806 6.70337 6.82283 6.86940 6.93102 6.95100 7.11777 7.34017 7.60341 7.75185 8.15265 8.36140 8.75735 9.11656 9.72963 10.32280 11.17809 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.005508 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.629852 B = 5082.330311 C = 6086.564127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.891 3.109 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.689 5.689 18 C 0.518 3.482 19 O -0.540 6.540 20 C 0.037 3.963 21 H 0.097 0.903 22 C 0.040 3.960 23 O -0.374 6.374 24 C 0.022 3.978 25 C 0.022 3.978 26 O -0.351 6.351 27 H 0.254 0.746 28 H 0.019 0.981 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.415 0.585 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -4.106 -7.661 8.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.190 4.190 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.342 5.342 18 C 0.302 3.698 19 O -0.418 6.418 20 C -0.025 4.025 21 H 0.115 0.885 22 C -0.037 4.037 23 O -0.292 6.292 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.269 6.269 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.253 0.747 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.885 -4.312 -7.570 9.178 hybrid contribution 0.004 1.287 0.068 1.288 sum 2.889 -3.026 -7.503 8.590 Atomic orbital electron populations 1.70007 1.05114 1.25585 1.53324 1.25076 0.95178 0.98104 1.00666 0.86484 0.79470 0.84119 0.77902 1.21341 1.21478 1.20427 1.19158 0.92086 0.84077 1.42937 0.91374 1.44116 1.37202 1.01934 1.47956 1.20733 0.88728 0.97394 0.88317 1.22192 1.00044 0.96567 0.99559 1.21359 0.97633 0.97364 0.98127 1.21932 0.98321 0.98211 0.98227 1.20790 0.93274 0.88547 0.92111 0.94932 1.21315 0.98516 0.90507 0.88435 1.45901 1.14349 1.43800 1.30139 1.19711 0.85143 0.82462 0.82521 1.90667 1.23608 1.54507 1.73019 1.22610 0.86947 0.99772 0.93131 0.88521 1.23152 1.00407 0.92485 0.87690 1.88122 1.30326 1.65365 1.45402 1.23283 0.85989 1.01204 0.95063 1.23313 1.00805 0.93047 0.88368 1.88207 1.28627 1.64892 1.45214 0.93553 0.96312 0.89981 0.92825 0.93522 0.93699 0.92856 0.92057 0.92981 0.91425 0.92485 0.74681 0.91643 0.86756 0.92041 0.87732 0.87516 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 11.31 55.49 0.63 -23.15 16 2 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 3 Si 0.89 20.83 29.58 -169.99 -5.03 15.80 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.17 7.00 -15.06 -0.11 -6.28 16 8 H 0.07 1.73 5.93 -52.49 -0.31 1.42 16 9 N -0.59 -13.06 2.98 -164.57 -0.49 -13.55 16 10 C 0.17 3.82 5.26 -3.72 -0.02 3.80 16 11 C -0.14 -2.62 6.08 -26.62 -0.16 -2.78 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 14 C 0.16 2.98 3.00 -67.44 -0.20 2.78 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 16 C 0.14 2.51 4.43 -4.05 -0.02 2.49 16 17 N -0.69 -12.84 3.85 -60.30 -0.23 -13.07 16 18 C 0.52 9.99 7.18 -10.99 -0.08 9.91 16 19 O -0.54 -12.16 16.51 -14.27 -0.24 -12.39 16 20 C 0.04 0.62 3.25 -27.81 -0.09 0.53 16 21 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 22 C 0.04 0.57 6.29 37.23 0.23 0.81 16 23 O -0.37 -5.28 10.85 -48.80 -0.53 -5.81 16 24 C 0.02 0.24 7.05 37.23 0.26 0.50 16 25 C 0.02 0.27 7.05 37.23 0.26 0.53 16 26 O -0.35 -5.99 10.03 -62.51 -0.63 -6.62 16 27 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 2.05 6.25 -51.93 -0.32 1.72 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.38 7.41 -51.93 -0.38 1.00 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.42 7.90 7.35 -40.82 -0.30 7.60 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.11 1.52 8.05 -51.93 -0.42 1.10 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -29.61 344.67 -8.84 -38.45 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.22 Total: 6.78 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.30 Total: 8.36 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.09 Total: -49.76 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.39 Total: -24.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.61 -8.84 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024339148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.044 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds