Wall clock time and date at job start Fri Apr 10 2020 17:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47266 * 300.00269 * 3 2 1 6 6 H 1.48507 * 109.46955 * 60.00269 * 3 2 1 7 7 C 1.38819 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99467 * 196.95086 * 7 2 1 9 9 N 1.36933 * 120.00225 * 17.22008 * 7 2 1 10 10 C 1.47605 * 118.63995 * 26.36532 * 9 7 2 11 11 C 1.54296 * 111.94146 * 137.77628 * 10 9 7 12 12 C 1.50879 * 110.23499 * 319.70113 * 11 10 9 13 13 C 1.52568 * 109.36327 * 91.79807 * 12 11 10 14 14 C 1.47088 * 114.32270 * 274.99081 * 13 12 11 15 15 H 1.08992 * 109.18833 * 302.62276 * 14 13 12 16 16 N 1.46507 * 109.32566 * 183.05910 * 14 13 12 17 17 C 1.34773 * 120.00004 * 154.13028 * 16 14 13 18 18 O 1.21287 * 120.00260 * 0.02562 * 17 16 14 19 19 C 1.50706 * 120.00121 * 179.97438 * 17 16 14 20 20 H 1.09002 * 109.52000 * 304.87062 * 19 17 16 21 21 C 1.53142 * 109.52076 * 65.00018 * 19 17 16 22 22 O 1.43078 * 109.14736 * 175.21349 * 21 19 17 23 23 C 1.43065 * 113.59544 * 302.04610 * 22 21 19 24 24 C 1.53146 * 109.15280 * 57.95288 * 23 22 21 25 25 O 1.43072 * 109.52377 * 184.67058 * 19 17 16 26 26 C 1.44575 * 118.64303 * 206.63029 * 9 7 2 27 27 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09000 * 108.94330 * 258.57290 * 10 9 7 29 29 H 1.08999 * 108.95229 * 17.20023 * 10 9 7 30 30 H 1.09005 * 109.36913 * 199.41931 * 11 10 9 31 31 H 1.09006 * 109.12175 * 79.82461 * 11 10 9 32 32 H 1.08999 * 109.49016 * 331.82708 * 12 11 10 33 33 H 1.09004 * 109.50231 * 211.77539 * 12 11 10 34 34 H 1.08997 * 108.51342 * 153.72727 * 13 12 11 35 35 H 1.09004 * 108.50876 * 36.24109 * 13 12 11 36 36 H 0.96997 * 120.00200 * 334.12889 * 16 14 13 37 37 H 1.08998 * 109.52311 * 295.11352 * 21 19 17 38 38 H 1.08998 * 109.52922 * 55.31314 * 21 19 17 39 39 H 1.08996 * 109.52644 * 177.85049 * 23 22 21 40 40 H 1.08993 * 109.52857 * 297.98663 * 23 22 21 41 41 H 1.09006 * 109.52250 * 64.58784 * 24 23 22 42 42 H 1.08997 * 109.52767 * 184.71946 * 24 23 22 43 43 H 1.08998 * 109.45163 * 30.74859 * 26 9 7 44 44 H 1.09005 * 109.44324 * 150.66715 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2226 0.2722 9 7 1.3716 -2.3614 -0.3521 10 6 0.2065 -2.2814 -1.2548 11 6 0.2277 -3.3943 -2.3234 12 6 1.6320 -3.5994 -2.8354 13 6 2.3189 -4.6819 -2.0084 14 6 2.9401 -4.1937 -0.7677 15 1 3.6638 -3.4160 -1.0115 16 7 3.6265 -5.3026 -0.1002 17 6 4.6658 -5.0551 0.7213 18 8 5.0328 -3.9143 0.9083 19 6 5.3715 -6.1958 1.4085 20 1 4.6472 -6.7882 1.9676 21 6 6.0561 -7.0791 0.3614 22 8 6.8149 -8.0933 1.0268 23 6 7.8032 -7.5746 1.9218 24 6 7.1186 -6.6911 2.9689 25 8 6.3598 -5.6770 2.3035 26 6 1.8629 -3.6123 0.1808 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7054 -2.3703 -0.6643 29 1 0.2105 -1.3120 -1.7530 30 1 -0.4217 -3.1120 -3.1522 31 1 -0.1346 -4.3219 -1.8802 32 1 2.1902 -2.6671 -2.7497 33 1 1.5970 -3.9075 -3.8804 34 1 3.0899 -5.1488 -2.6212 35 1 1.5804 -5.4410 -1.7502 36 1 3.3328 -6.2150 -0.2494 37 1 5.3012 -7.5454 -0.2716 38 1 6.7207 -6.4698 -0.2510 39 1 8.3135 -8.3995 2.4189 40 1 8.5272 -6.9828 1.3618 41 1 6.4539 -7.3006 3.5813 42 1 7.8734 -6.2258 3.6027 43 1 2.2997 -3.4412 1.1646 44 1 1.0372 -4.3186 0.2685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034103987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:40 Heat of formation + Delta-G solvation = -98.060286 kcal Electronic energy + Delta-G solvation = -25618.499698 eV Core-core repulsion = 21957.898083 eV Total energy + Delta-G solvation = -3660.601615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56305 -39.18364 -37.56827 -36.19679 -34.55607 -33.26554 -32.13759 -30.86203 -30.03054 -28.20137 -25.98581 -25.25928 -24.19131 -23.10071 -21.99443 -20.35021 -20.12101 -19.17229 -17.61148 -17.17001 -16.68183 -16.52489 -16.22970 -15.75590 -15.51946 -15.00490 -14.75703 -14.34093 -14.06247 -13.63748 -13.48613 -13.28692 -13.09343 -12.60225 -12.57562 -12.48912 -12.11713 -11.88202 -11.52227 -11.08971 -11.04608 -10.92193 -10.83059 -10.74072 -10.52750 -10.13182 -10.09396 -9.71973 -9.63569 -9.58637 -9.55764 -9.34110 -8.84112 -8.29247 -6.61198 -5.71955 -3.14738 2.75012 2.86189 3.36434 3.43722 3.51925 3.57781 3.84764 4.26780 4.58137 4.63223 4.67914 4.69393 4.82852 4.96656 5.13523 5.23916 5.28141 5.35952 5.43878 5.45700 5.47470 5.54537 5.74472 5.98071 6.03254 6.13786 6.30005 6.38636 6.57978 6.59706 6.61604 6.65072 6.71082 6.79578 6.82408 6.93629 7.11426 7.45821 7.73221 7.73605 7.96521 8.46917 8.55112 9.31422 9.96558 10.40221 11.35797 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.004147 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.526543 B = 6751.030982 C = 7824.407527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.111 4.111 14 C 0.115 3.885 15 H 0.089 0.911 16 N -0.720 5.720 17 C 0.515 3.485 18 O -0.502 6.502 19 C 0.038 3.962 20 H 0.092 0.908 21 C 0.038 3.962 22 O -0.376 6.376 23 C 0.021 3.979 24 C 0.023 3.977 25 O -0.348 6.348 26 C 0.157 3.843 27 H 0.251 0.749 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.391 0.609 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 -18.027 -0.741 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.009 3.991 15 H 0.107 0.893 16 N -0.373 5.373 17 C 0.298 3.702 18 O -0.375 6.375 19 C -0.024 4.024 20 H 0.110 0.890 21 C -0.039 4.039 22 O -0.294 6.294 23 C -0.056 4.056 24 C -0.055 4.055 25 O -0.266 6.266 26 C 0.027 3.973 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.225 0.775 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.067 0.933 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.569 -17.014 -0.593 19.529 hybrid contribution 0.266 0.344 0.025 0.435 sum 9.835 -16.669 -0.568 19.363 Atomic orbital electron populations 1.70099 1.05211 1.25241 1.54423 1.24998 0.95202 0.98345 1.00764 0.86282 0.79759 0.84072 0.77144 1.20080 1.21647 1.21785 1.19361 0.93195 0.84982 1.41013 0.91221 1.43599 1.33951 1.01373 1.51522 1.21115 0.88758 0.95936 0.89051 1.22131 0.95807 1.00630 0.99678 1.20821 0.97105 0.99380 0.96559 1.20573 0.99370 0.98981 0.96024 1.21303 0.96463 0.87749 0.93572 0.89300 1.46097 1.32899 1.10666 1.47638 1.19780 0.80775 0.89595 0.80087 1.90807 1.64327 1.22072 1.60271 1.22628 0.92106 0.94688 0.93002 0.89021 1.23151 0.96269 0.90717 0.93791 1.88096 1.50493 1.31622 1.59220 1.23313 0.91016 0.99182 0.92088 1.23331 0.96069 0.91316 0.94735 1.88278 1.49498 1.30633 1.58154 1.20913 0.93238 0.88460 0.94646 0.93854 0.95677 0.90783 0.92903 0.93680 0.90430 0.93349 0.93383 0.92782 0.77549 0.87145 0.91337 0.87552 0.91811 0.91908 0.87243 0.93316 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.52 11.11 55.49 0.62 -25.91 16 2 C 0.01 0.14 4.83 -17.43 -0.08 0.06 16 3 Si 0.90 22.58 29.59 -169.99 -5.03 17.55 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.26 -7.22 9.43 -15.06 -0.14 -7.36 16 8 H 0.07 2.05 7.89 -52.48 -0.41 1.64 16 9 N -0.58 -14.53 2.26 -171.87 -0.39 -14.92 16 10 C 0.18 4.14 4.71 -2.76 -0.01 4.13 16 11 C -0.14 -2.58 5.71 -27.12 -0.15 -2.74 16 12 C -0.10 -1.68 5.51 -28.02 -0.15 -1.83 16 13 C -0.11 -1.66 4.55 -29.79 -0.14 -1.80 16 14 C 0.12 2.03 2.34 -69.78 -0.16 1.87 16 15 H 0.09 1.91 7.56 -51.93 -0.39 1.51 16 16 N -0.72 -10.09 5.02 -55.62 -0.28 -10.37 16 17 C 0.51 8.33 7.15 -10.98 -0.08 8.26 16 18 O -0.50 -11.02 16.16 -14.27 -0.23 -11.25 16 19 C 0.04 0.47 3.26 -27.81 -0.09 0.38 16 20 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 21 C 0.04 0.38 6.29 37.23 0.23 0.62 16 22 O -0.38 -3.86 10.85 -48.80 -0.53 -4.39 16 23 C 0.02 0.17 7.05 37.23 0.26 0.44 16 24 C 0.02 0.21 7.05 37.23 0.26 0.47 16 25 O -0.35 -4.96 10.03 -62.51 -0.63 -5.59 16 26 C 0.16 3.35 5.24 -4.09 -0.02 3.33 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.64 8.04 -51.93 -0.42 0.23 16 29 H 0.07 1.95 6.37 -51.93 -0.33 1.61 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 32 H 0.08 1.53 7.49 -51.93 -0.39 1.14 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 36 H 0.39 3.91 8.49 -40.82 -0.35 3.56 16 37 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.16 7.98 -51.93 -0.41 0.75 16 44 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -34.23 345.63 -8.78 -43.01 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.24 Total: 0.83 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.28 Total: 5.83 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.05 Total: -51.20 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -1.39 Total: -21.22 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.23 -8.78 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034103987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.050 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds