Wall clock time and date at job start Fri Apr 10 2020 17:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47266 * 300.00269 * 3 2 1 6 6 H 1.48507 * 109.46955 * 60.00269 * 3 2 1 7 7 C 1.38819 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99467 * 196.95086 * 7 2 1 9 9 N 1.36933 * 120.00225 * 17.22008 * 7 2 1 10 10 C 1.47605 * 118.63995 * 26.36532 * 9 7 2 11 11 C 1.54296 * 111.94146 * 137.77628 * 10 9 7 12 12 C 1.50879 * 110.23499 * 319.70113 * 11 10 9 13 13 C 1.52568 * 109.36327 * 91.79807 * 12 11 10 14 14 C 1.47088 * 114.32270 * 274.99081 * 13 12 11 15 15 H 1.08992 * 109.18833 * 302.62276 * 14 13 12 16 16 N 1.46507 * 109.32566 * 183.05910 * 14 13 12 17 17 C 1.34773 * 120.00004 * 154.13028 * 16 14 13 18 18 O 1.21287 * 120.00260 * 0.02562 * 17 16 14 19 19 C 1.50706 * 120.00121 * 179.97438 * 17 16 14 20 20 H 1.09002 * 109.52000 * 304.87062 * 19 17 16 21 21 C 1.53142 * 109.52076 * 65.00018 * 19 17 16 22 22 O 1.43078 * 109.14736 * 175.21349 * 21 19 17 23 23 C 1.43065 * 113.59544 * 302.04610 * 22 21 19 24 24 C 1.53146 * 109.15280 * 57.95288 * 23 22 21 25 25 O 1.43072 * 109.52377 * 184.67058 * 19 17 16 26 26 C 1.44575 * 118.64303 * 206.63029 * 9 7 2 27 27 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09000 * 108.94330 * 258.57290 * 10 9 7 29 29 H 1.08999 * 108.95229 * 17.20023 * 10 9 7 30 30 H 1.09005 * 109.36913 * 199.41931 * 11 10 9 31 31 H 1.09006 * 109.12175 * 79.82461 * 11 10 9 32 32 H 1.08999 * 109.49016 * 331.82708 * 12 11 10 33 33 H 1.09004 * 109.50231 * 211.77539 * 12 11 10 34 34 H 1.08997 * 108.51342 * 153.72727 * 13 12 11 35 35 H 1.09004 * 108.50876 * 36.24109 * 13 12 11 36 36 H 0.96997 * 120.00200 * 334.12889 * 16 14 13 37 37 H 1.08998 * 109.52311 * 295.11352 * 21 19 17 38 38 H 1.08998 * 109.52922 * 55.31314 * 21 19 17 39 39 H 1.08996 * 109.52644 * 177.85049 * 23 22 21 40 40 H 1.08993 * 109.52857 * 297.98663 * 23 22 21 41 41 H 1.09006 * 109.52250 * 64.58784 * 24 23 22 42 42 H 1.08997 * 109.52767 * 184.71946 * 24 23 22 43 43 H 1.08998 * 109.45163 * 30.74859 * 26 9 7 44 44 H 1.09005 * 109.44324 * 150.66715 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2226 0.2722 9 7 1.3716 -2.3614 -0.3521 10 6 0.2065 -2.2814 -1.2548 11 6 0.2277 -3.3943 -2.3234 12 6 1.6320 -3.5994 -2.8354 13 6 2.3189 -4.6819 -2.0084 14 6 2.9401 -4.1937 -0.7677 15 1 3.6638 -3.4160 -1.0115 16 7 3.6265 -5.3026 -0.1002 17 6 4.6658 -5.0551 0.7213 18 8 5.0328 -3.9143 0.9083 19 6 5.3715 -6.1958 1.4085 20 1 4.6472 -6.7882 1.9676 21 6 6.0561 -7.0791 0.3614 22 8 6.8149 -8.0933 1.0268 23 6 7.8032 -7.5746 1.9218 24 6 7.1186 -6.6911 2.9689 25 8 6.3598 -5.6770 2.3035 26 6 1.8629 -3.6123 0.1808 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7054 -2.3703 -0.6643 29 1 0.2105 -1.3120 -1.7530 30 1 -0.4217 -3.1120 -3.1522 31 1 -0.1346 -4.3219 -1.8802 32 1 2.1902 -2.6671 -2.7497 33 1 1.5970 -3.9075 -3.8804 34 1 3.0899 -5.1488 -2.6212 35 1 1.5804 -5.4410 -1.7502 36 1 3.3328 -6.2150 -0.2494 37 1 5.3012 -7.5454 -0.2716 38 1 6.7207 -6.4698 -0.2510 39 1 8.3135 -8.3995 2.4189 40 1 8.5272 -6.9828 1.3618 41 1 6.4539 -7.3006 3.5813 42 1 7.8734 -6.2258 3.6027 43 1 2.2997 -3.4412 1.1646 44 1 1.0372 -4.3186 0.2685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034103987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:39 Heat of formation + Delta-G solvation = -122.980829 kcal Electronic energy + Delta-G solvation = -25619.580334 eV Core-core repulsion = 21957.898083 eV Total energy + Delta-G solvation = -3661.682251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.62430 -40.38424 -39.07294 -37.09703 -36.22239 -34.87385 -33.20599 -32.79572 -31.34363 -29.12862 -27.86075 -26.30992 -25.65957 -24.82055 -22.91374 -21.68586 -21.49479 -20.84554 -18.70029 -18.61187 -18.16397 -17.54665 -17.18962 -17.03489 -16.53124 -16.40354 -16.29082 -15.79450 -15.63307 -15.11424 -14.78084 -14.58181 -14.38428 -14.13317 -14.00323 -13.82830 -13.29627 -13.08656 -13.02579 -12.85282 -12.63826 -12.45652 -12.35082 -12.05346 -11.90710 -11.65667 -11.62467 -11.44880 -11.37419 -11.14368 -10.81003 -10.54380 -10.30067 -10.14609 -8.65646 -7.89947 -5.34885 1.38702 1.41103 1.49662 1.53370 1.75836 2.48734 2.63677 2.90333 3.22529 3.42937 3.61041 3.75545 3.84265 3.92829 3.96466 4.11510 4.14502 4.24633 4.27753 4.42224 4.47822 4.51377 4.55192 4.71783 4.77031 4.78028 4.79959 5.00705 5.05259 5.12104 5.23313 5.27344 5.36858 5.41120 5.62441 5.64293 5.71772 5.82137 5.86049 5.89199 6.38951 6.57524 7.16772 7.27089 7.93480 8.27599 9.14313 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.004147 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.526543 B = 6751.030982 C = 7824.407527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.040 4.040 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.045 0.955 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.109 4.109 14 C 0.135 3.865 15 H 0.044 0.956 16 N -0.699 5.699 17 C 0.511 3.489 18 O -0.571 6.571 19 C 0.044 3.956 20 H 0.117 0.883 21 C 0.045 3.955 22 O -0.380 6.380 23 C 0.019 3.981 24 C 0.016 3.984 25 O -0.390 6.390 26 C 0.157 3.843 27 H 0.250 0.750 28 H -0.004 1.004 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.418 0.582 37 H 0.142 0.858 38 H 0.056 0.944 39 H 0.137 0.863 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.010 0.990 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -21.347 -1.879 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.063 0.937 9 N -0.319 5.319 10 C 0.059 3.941 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.146 4.146 14 C 0.028 3.972 15 H 0.062 0.938 16 N -0.353 5.353 17 C 0.297 3.703 18 O -0.448 6.448 19 C -0.017 4.017 20 H 0.134 0.866 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.057 4.057 24 C -0.060 4.060 25 O -0.310 6.310 26 C 0.028 3.972 27 H 0.060 0.940 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.256 0.744 37 H 0.160 0.840 38 H 0.075 0.925 39 H 0.155 0.845 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.891 -20.425 -1.745 22.761 hybrid contribution 0.201 1.342 0.475 1.438 sum 10.092 -19.083 -1.269 21.625 Atomic orbital electron populations 1.70216 1.06125 1.25649 1.55478 1.25598 0.95991 1.00872 1.01152 0.85401 0.78276 0.80708 0.77279 1.20511 1.20680 1.21599 1.19348 0.92364 0.86879 1.40758 0.93700 1.43733 1.34157 1.01609 1.52396 1.20943 0.86867 0.96696 0.89566 1.21992 0.97490 0.99111 0.98283 1.20811 0.95531 0.98327 0.99032 1.20522 1.00811 0.98925 0.94386 1.20731 0.94290 0.87992 0.94183 0.93809 1.45802 1.31889 1.11150 1.46477 1.20595 0.80580 0.89769 0.79368 1.90782 1.66343 1.25146 1.62558 1.22648 0.92485 0.92965 0.93621 0.86570 1.23174 0.96684 0.90418 0.92973 1.88096 1.50719 1.31597 1.59467 1.23479 0.90531 1.00062 0.91639 1.23615 0.96315 0.90915 0.95111 1.88224 1.50381 1.33409 1.58951 1.21012 0.94628 0.87751 0.93773 0.94035 0.98616 0.94415 0.91073 0.91353 0.94429 0.89674 0.90201 0.89702 0.74396 0.84007 0.92524 0.84485 0.92199 0.90597 0.85899 0.97101 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 11.11 21.65 0.24 -56.21 16 2 C -0.04 -2.39 4.83 84.86 0.41 -1.98 16 3 Si 0.95 48.25 29.59 68.60 2.03 50.28 16 4 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 7 C -0.26 -15.64 9.43 84.04 0.79 -14.85 16 8 H 0.05 2.85 7.89 -2.91 -0.02 2.82 16 9 N -0.60 -30.87 2.26 -697.68 -1.58 -32.45 16 10 C 0.18 8.84 4.71 86.61 0.41 9.24 16 11 C -0.13 -4.41 5.71 30.34 0.17 -4.23 16 12 C -0.10 -3.05 5.51 29.76 0.16 -2.89 16 13 C -0.11 -2.86 4.55 28.61 0.13 -2.73 16 14 C 0.14 4.70 2.34 43.79 0.10 4.80 16 15 H 0.04 1.95 7.56 -2.39 -0.02 1.94 16 16 N -0.70 -18.44 5.02 -448.28 -2.25 -20.69 16 17 C 0.51 16.56 7.15 87.66 0.63 17.18 16 18 O -0.57 -26.43 16.16 15.90 0.26 -26.17 16 19 C 0.04 1.04 3.26 29.90 0.10 1.13 16 20 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 21 C 0.04 0.79 6.29 72.03 0.45 1.24 16 22 O -0.38 -6.64 10.85 -136.00 -1.48 -8.11 16 23 C 0.02 0.27 7.05 72.03 0.51 0.78 16 24 C 0.02 0.28 7.05 72.03 0.51 0.79 16 25 O -0.39 -11.02 10.03 -122.90 -1.23 -12.25 16 26 C 0.16 6.81 5.24 87.37 0.46 7.27 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.00 -0.23 8.04 -2.39 -0.02 -0.24 16 29 H 0.04 2.06 6.37 -2.39 -0.02 2.04 16 30 H 0.07 2.16 8.14 -2.38 -0.02 2.15 16 31 H 0.07 2.03 7.32 -2.38 -0.02 2.01 16 32 H 0.04 1.47 7.49 -2.39 -0.02 1.46 16 33 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.80 7.36 -2.39 -0.02 1.78 16 36 H 0.42 6.70 8.49 -92.71 -0.79 5.91 16 37 H 0.14 1.52 8.05 -2.39 -0.02 1.50 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.01 0.53 7.98 -2.39 -0.02 0.51 16 44 H 0.05 2.06 8.07 -2.38 -0.02 2.04 16 Total: -1.00 -81.66 345.63 1.03 -80.64 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.20 Total: 9.20 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 4.83 Total: 15.76 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -3.59 Total: -109.35 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -2.45 Total: -46.54 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -81.66 1.03 -80.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034103987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.343 kcal (2) G-P(sol) polarization free energy of solvation -81.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds