Wall clock time and date at job start Fri Apr 10 2020 17:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.44799 * 2 1 4 4 C 1.34774 * 119.99920 * 60.03700 * 3 2 1 5 5 O 1.21285 * 120.00392 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00197 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.52002 * 304.86260 * 6 4 3 8 8 C 1.53142 * 109.52526 * 64.99334 * 6 4 3 9 9 O 1.43074 * 109.15249 * 175.21776 * 8 6 4 10 10 C 1.43078 * 113.59050 * 302.05266 * 9 8 6 11 11 C 1.53142 * 109.15529 * 57.94889 * 10 9 8 12 12 O 1.43068 * 109.52642 * 184.67340 * 6 4 3 13 13 C 1.53036 * 109.46032 * 240.03322 * 2 1 3 14 14 C 1.53190 * 109.31152 * 178.61271 * 13 2 1 15 15 N 1.46929 * 108.77401 * 54.63914 * 14 13 2 16 16 C 1.36938 * 120.62988 * 126.36889 * 15 14 13 17 17 H 1.08000 * 119.99496 * 208.21286 * 16 15 14 18 18 C 1.38808 * 120.00167 * 28.21169 * 16 15 14 19 19 N 1.31618 * 120.00375 * 24.96714 * 18 16 15 20 20 Si 1.86798 * 120.00001 * 204.96589 * 18 16 15 21 21 H 1.48499 * 109.47326 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47184 * 300.00104 * 20 18 16 23 23 H 1.48503 * 109.47177 * 60.00211 * 20 18 16 24 24 C 1.46921 * 118.73592 * 306.63692 * 15 14 13 25 25 C 1.52756 * 109.00666 * 53.31556 * 24 15 14 26 26 H 1.08998 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46917 * 299.96592 * 1 2 3 28 28 H 1.09003 * 109.46618 * 59.96436 * 1 2 3 29 29 H 0.97005 * 120.00272 * 240.02846 * 3 2 1 30 30 H 1.09000 * 109.52384 * 295.12470 * 8 6 4 31 31 H 1.09003 * 109.52253 * 55.24790 * 8 6 4 32 32 H 1.08999 * 109.52406 * 177.85522 * 10 9 8 33 33 H 1.08998 * 109.52385 * 297.98198 * 10 9 8 34 34 H 1.08998 * 109.52390 * 64.58797 * 11 10 9 35 35 H 1.08998 * 109.52344 * 184.78736 * 11 10 9 36 36 H 1.09006 * 109.49677 * 58.66612 * 13 2 1 37 37 H 1.08997 * 109.50157 * 298.56538 * 13 2 1 38 38 H 1.09000 * 109.58877 * 294.84909 * 14 13 2 39 39 H 1.09003 * 109.58966 * 174.42582 * 14 13 2 40 40 H 0.97008 * 119.99527 * 5.77244 * 19 18 16 41 41 H 1.09002 * 109.58296 * 173.14566 * 24 15 14 42 42 H 1.09003 * 109.59305 * 293.57179 * 24 15 14 43 43 H 1.09008 * 109.56912 * 185.54821 * 25 24 15 44 44 H 1.09002 * 109.36777 * 65.49340 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0178 1.3814 0.0000 4 6 1.6925 2.2109 1.0112 5 8 0.9955 1.8139 1.9210 6 6 2.1937 3.6322 1.0110 7 1 3.2802 3.6352 0.9229 8 6 1.5824 4.3904 -0.1708 9 8 1.9739 5.7646 -0.1000 10 6 1.5900 6.4073 1.1193 11 6 2.2014 5.6491 2.3011 12 8 1.8099 4.2748 2.2302 13 6 2.0399 -0.7207 -1.2500 14 6 3.5714 -0.6885 -1.2642 15 7 4.0678 -1.2488 0.0001 16 6 4.9757 -2.2740 0.0000 17 1 5.0028 -2.9713 0.8243 18 6 5.8612 -2.4169 -1.0594 19 7 6.1880 -1.3717 -1.7896 20 14 6.5891 -4.0926 -1.4487 21 1 7.4988 -3.9779 -2.6168 22 1 7.3524 -4.5857 -0.2742 23 1 5.4954 -5.0462 -1.7642 24 6 3.5672 -0.6923 1.2643 25 6 2.0399 -0.7208 1.2501 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5133 0.8903 28 1 -0.3633 0.5144 -0.8897 29 1 2.5750 1.6991 -0.7277 30 1 1.9394 3.9575 -1.1053 31 1 0.4956 4.3175 -0.1274 32 1 1.9526 7.4352 1.1191 33 1 0.5035 6.4043 1.2062 34 1 3.2881 5.7210 2.2570 35 1 1.8443 6.0820 3.2355 36 1 1.6572 -0.2207 -2.1398 37 1 1.6979 -1.7556 -1.2383 38 1 3.9143 0.3410 -1.3673 39 1 3.9418 -1.2844 -2.0984 40 1 5.8772 -0.4879 -1.5379 41 1 3.9347 -1.2907 2.0979 42 1 3.9097 0.3369 1.3716 43 1 1.6572 -0.2207 2.1399 44 1 1.6978 -1.7556 1.2383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045368400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:43 Heat of formation + Delta-G solvation = -100.299986 kcal Electronic energy + Delta-G solvation = -26161.145899 eV Core-core repulsion = 22500.447164 eV Total energy + Delta-G solvation = -3660.698735 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74904 -39.59026 -37.47605 -36.17697 -34.64377 -32.79840 -31.53246 -30.67886 -30.01628 -28.21173 -27.33212 -25.25672 -24.00608 -22.50508 -22.33145 -21.21707 -20.39247 -18.81769 -17.84321 -17.41675 -16.97764 -16.61944 -16.22506 -15.62444 -14.98506 -14.95906 -14.42291 -14.27855 -13.99848 -13.66236 -13.52126 -13.50193 -13.26550 -13.16348 -12.64770 -12.33556 -12.01482 -11.90260 -11.72942 -11.58663 -11.32281 -11.06297 -10.85462 -10.71222 -10.66204 -10.40374 -10.17337 -10.01364 -9.94986 -9.52587 -9.35433 -9.15463 -8.78046 -8.38395 -6.89362 -6.08942 -3.24906 2.65370 2.82414 3.38196 3.49155 3.51607 3.69796 3.83057 4.26671 4.57602 4.62103 4.65065 4.69881 4.83410 4.93754 5.14167 5.18061 5.24834 5.28106 5.30555 5.37948 5.44154 5.47977 5.55244 5.86909 5.91248 6.05317 6.11530 6.17279 6.28117 6.34774 6.53610 6.56841 6.60631 6.69840 6.73748 6.79132 6.87913 7.00094 7.10849 7.70356 8.00364 8.36414 8.55727 9.09892 9.82834 10.27719 11.19220 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.004091 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.359837 B = 6841.835431 C = 7271.814788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.186 3.814 3 N -0.707 5.707 4 C 0.525 3.475 5 O -0.516 6.516 6 C 0.035 3.965 7 H 0.094 0.906 8 C 0.039 3.961 9 O -0.374 6.374 10 C 0.021 3.979 11 C 0.023 3.977 12 O -0.349 6.349 13 C -0.140 4.140 14 C 0.152 3.848 15 N -0.597 5.597 16 C -0.348 4.348 17 H 0.055 0.945 18 C -0.024 4.024 19 N -0.916 5.916 20 Si 1.063 2.937 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.153 3.847 25 C -0.144 4.144 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.399 0.601 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.081 0.919 40 H 0.267 0.733 41 H 0.052 0.948 42 H 0.012 0.988 43 H 0.074 0.926 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 12.983 2.472 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 N -0.361 5.361 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.026 4.026 7 H 0.112 0.888 8 C -0.039 4.039 9 O -0.292 6.292 10 C -0.056 4.056 11 C -0.055 4.055 12 O -0.267 6.267 13 C -0.180 4.180 14 C 0.025 3.975 15 N -0.321 5.321 16 C -0.477 4.477 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.556 5.556 20 Si 0.893 3.107 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.027 3.973 25 C -0.184 4.184 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.234 0.766 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.954 11.825 2.081 15.596 hybrid contribution -0.619 1.053 0.847 1.486 sum -10.572 12.878 2.929 16.917 Atomic orbital electron populations 1.22228 0.95068 1.02155 1.02441 1.20299 0.92852 0.79570 0.97169 1.46085 1.53258 1.12208 1.24512 1.19720 0.80888 0.85867 0.82647 1.90651 1.36884 1.76406 1.35150 1.22634 1.00646 0.92180 0.87168 0.88829 1.23138 1.00051 0.82370 0.98296 1.88125 1.80390 1.23054 1.37628 1.23309 1.00026 0.97453 0.84797 1.23334 1.00046 0.82362 0.99718 1.88230 1.79961 1.23037 1.35484 1.22412 1.00290 1.00496 0.94786 1.20909 0.89042 0.96448 0.91052 1.44096 1.48409 1.40500 0.99116 1.19991 1.12596 1.04726 1.10376 0.92707 1.25818 0.95112 1.04481 0.97118 1.70807 1.42584 0.99177 1.43077 0.83546 0.75998 0.75006 0.76147 1.21117 1.22029 1.22069 1.20733 0.90961 0.95875 0.89748 1.22330 0.98908 0.99846 0.97286 0.92005 0.90832 0.93186 0.76577 0.87058 0.91441 0.87522 0.91907 0.91804 0.87282 0.92432 0.90533 0.96866 0.90031 0.92225 0.92918 0.96999 0.90703 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.40 37.16 0.31 -2.04 16 2 C 0.19 3.04 0.66 -131.78 -0.09 2.95 16 3 N -0.71 -10.52 4.07 -47.57 -0.19 -10.71 16 4 C 0.52 8.18 6.60 -10.98 -0.07 8.11 16 5 O -0.52 -9.71 12.73 -14.27 -0.18 -9.89 16 6 C 0.04 0.46 3.25 -27.81 -0.09 0.37 16 7 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 8 C 0.04 0.42 6.29 37.23 0.23 0.66 16 9 O -0.37 -4.17 10.85 -48.80 -0.53 -4.70 16 10 C 0.02 0.18 7.05 37.23 0.26 0.45 16 11 C 0.02 0.22 7.05 37.23 0.26 0.48 16 12 O -0.35 -4.89 10.03 -62.51 -0.63 -5.51 16 13 C -0.14 -2.42 4.96 -26.61 -0.13 -2.55 16 14 C 0.15 3.28 4.43 -3.71 -0.02 3.27 16 15 N -0.60 -14.53 2.85 -172.58 -0.49 -15.02 16 16 C -0.35 -9.58 9.48 -15.06 -0.14 -9.72 16 17 H 0.06 1.54 7.94 -52.49 -0.42 1.12 16 18 C -0.02 -0.65 4.68 -17.43 -0.08 -0.73 16 19 N -0.92 -26.64 12.43 55.49 0.69 -25.95 16 20 Si 1.06 24.88 29.99 -169.99 -5.10 19.78 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.32 6.23 -3.94 -0.02 3.30 16 25 C -0.14 -2.70 4.65 -26.83 -0.12 -2.82 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.40 5.36 7.18 -40.82 -0.29 5.07 16 30 H 0.11 1.02 8.05 -51.93 -0.42 0.60 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.01 0.28 6.67 -51.93 -0.35 -0.06 16 39 H 0.08 2.02 6.34 -51.93 -0.33 1.69 16 40 H 0.27 7.77 6.74 -40.82 -0.27 7.49 16 41 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.01 0.27 7.74 -51.93 -0.40 -0.14 16 43 H 0.07 1.44 6.20 -51.92 -0.32 1.12 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -32.69 338.51 -8.01 -40.70 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.98 Total: 4.50 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.30 Total: 1.70 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.00 Total: -51.68 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.34 Total: -20.10 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.10 Total: 19.78 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.69 -8.01 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045368400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.604 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds