Wall clock time and date at job start Fri Apr 10 2020 17:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47058 * 125.41214 * 2 1 4 4 C 1.54105 * 103.86165 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.66966 * 241.34311 * 4 3 2 6 6 C 1.50705 * 110.54384 * 118.59434 * 4 3 2 7 7 O 1.21282 * 120.00184 * 264.10209 * 6 4 3 8 8 N 1.34780 * 119.99687 * 84.10574 * 6 4 3 9 9 C 1.46501 * 119.99477 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.88971 * 31.12355 * 9 8 6 11 11 C 1.55127 * 111.19199 * 267.18383 * 9 8 6 12 12 N 1.47424 * 104.72465 * 279.19479 * 11 9 8 13 13 C 1.36931 * 125.65107 * 155.81754 * 12 11 9 14 14 H 1.08002 * 120.00098 * 359.71936 * 13 12 11 15 15 C 1.38812 * 120.00429 * 179.71821 * 13 12 11 16 16 N 1.31624 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.27849 * 15 13 12 18 18 H 1.48497 * 109.47173 * 179.72427 * 17 15 13 19 19 H 1.48506 * 109.46866 * 299.71963 * 17 15 13 20 20 H 1.48501 * 109.47438 * 59.72083 * 17 15 13 21 21 C 1.47026 * 108.70283 * 335.55479 * 12 11 9 22 22 C 1.54322 * 107.27105 * 1.28275 * 21 12 11 23 23 H 1.09000 * 110.72605 * 263.83593 * 22 21 12 24 24 O 1.42900 * 110.72159 * 140.72986 * 22 21 12 25 25 N 1.47049 * 103.86256 * 0.02562 * 4 3 2 26 26 C 1.33942 * 109.18030 * 359.97438 * 25 4 3 27 27 O 1.21591 * 123.04068 * 180.02562 * 26 25 4 28 28 H 1.08999 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47194 * 299.97629 * 1 2 3 30 30 H 1.08998 * 109.47062 * 59.97820 * 1 2 3 31 31 H 1.09001 * 110.54530 * 61.40187 * 3 2 1 32 32 H 1.08995 * 110.54386 * 298.59547 * 3 2 1 33 33 H 0.97000 * 120.00271 * 359.97438 * 8 6 4 34 34 H 1.08998 * 110.49534 * 160.35510 * 11 9 8 35 35 H 1.08998 * 110.34323 * 37.95715 * 11 9 8 36 36 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.88585 * 120.70557 * 21 12 11 38 38 H 1.09006 * 109.87883 * 241.71762 * 21 12 11 39 39 H 0.96703 * 113.99125 * 61.46010 * 24 22 21 40 40 H 0.97000 * 125.40626 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2876 0.9463 0.8957 6 6 4.4909 1.0661 -1.2383 7 8 4.5394 0.3333 -2.2034 8 7 5.0992 2.2683 -1.2736 9 6 5.8194 2.6895 -2.4778 10 1 5.3626 2.2658 -3.3721 11 6 7.3223 2.3148 -2.3922 12 7 7.9266 3.3758 -1.5660 13 6 9.0786 3.2595 -0.8351 14 1 9.6232 2.3268 -0.8301 15 6 9.5467 4.3402 -0.1004 16 7 8.8833 5.4770 -0.1068 17 14 11.1225 4.1839 0.8905 18 1 11.4068 5.4709 1.5745 19 1 10.9657 3.1091 1.9033 20 1 12.2475 3.8473 -0.0185 21 6 7.0907 4.5815 -1.6618 22 6 5.8916 4.2368 -2.5700 23 1 6.0808 4.5535 -3.5956 24 8 4.6922 4.8328 -2.0717 25 7 3.5537 -0.8248 0.0003 26 6 2.2411 -1.0917 0.0002 27 8 1.7946 -2.2226 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 2.1406 1.7934 0.8962 32 1 2.1406 1.7933 -0.8961 33 1 5.0601 2.8545 -0.5018 34 1 7.7707 2.3060 -3.3857 35 1 7.4441 1.3441 -1.9115 36 1 9.2106 6.2324 0.4063 37 1 6.7359 4.8664 -0.6714 38 1 7.6664 5.3979 -2.0982 39 1 4.7179 5.7989 -2.0379 40 1 4.2620 -1.4875 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083700050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:11 Heat of formation + Delta-G solvation = -56.259849 kcal Electronic energy + Delta-G solvation = -25031.179635 eV Core-core repulsion = 21268.850279 eV Total energy + Delta-G solvation = -3762.329355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38746 -39.47065 -37.89031 -36.21410 -35.16568 -34.20191 -33.81618 -31.82239 -29.70765 -28.46397 -27.49306 -26.92678 -24.64119 -23.82048 -21.00863 -20.64646 -20.45104 -19.89728 -17.93684 -17.69860 -17.01476 -16.76594 -16.39144 -15.92542 -15.45284 -14.90890 -14.83743 -14.32867 -14.27343 -13.99946 -13.86045 -13.59877 -13.29857 -12.88486 -12.64050 -12.50390 -12.46763 -12.21718 -11.99696 -11.55372 -11.33159 -10.92794 -10.84785 -10.36389 -10.34586 -10.20064 -10.06688 -9.92479 -9.40732 -9.27412 -8.90154 -8.71950 -8.63194 -6.99747 -5.86279 -3.20092 2.34755 2.71736 2.93474 3.29304 3.32499 3.37667 3.37995 3.83070 4.17321 4.33518 4.47397 4.65076 4.69445 4.94152 5.12109 5.17143 5.23404 5.31965 5.38649 5.41771 5.51767 5.54795 5.72668 5.74303 6.00986 6.14912 6.30320 6.49215 6.50514 6.84398 7.00100 7.21683 7.32907 7.34413 7.62352 7.74139 7.96597 8.07918 8.35655 8.50796 9.06043 9.65963 10.29234 11.25353 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.003896 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.169630 B = 7185.976622 C = 7711.191101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.638 5.638 3 C 0.109 3.891 4 C 0.105 3.895 5 H 0.117 0.883 6 C 0.502 3.498 7 O -0.535 6.535 8 N -0.684 5.684 9 C 0.140 3.860 10 H 0.094 0.906 11 C 0.124 3.876 12 N -0.600 5.600 13 C -0.229 4.229 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.924 5.924 17 Si 0.914 3.086 18 H -0.290 1.290 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.149 3.851 22 C 0.065 3.935 23 H 0.067 0.933 24 O -0.564 6.564 25 N -0.713 5.713 26 C 0.706 3.294 27 O -0.588 6.588 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.409 0.591 34 H 0.033 0.967 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.379 0.621 40 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 -1.639 0.379 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.377 5.377 3 C -0.016 4.016 4 C -0.006 4.006 5 H 0.135 0.865 6 C 0.285 3.715 7 O -0.412 6.412 8 N -0.334 5.334 9 C 0.034 3.966 10 H 0.112 0.888 11 C -0.004 4.004 12 N -0.328 5.328 13 C -0.357 4.357 14 H 0.096 0.904 15 C -0.202 4.202 16 N -0.572 5.572 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.024 3.976 22 C 0.005 3.995 23 H 0.085 0.915 24 O -0.369 6.369 25 N -0.374 5.374 26 C 0.406 3.594 27 O -0.466 6.466 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.244 0.756 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.226 0.774 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -13.857 -3.203 -0.137 14.223 hybrid contribution 1.622 0.887 0.780 2.007 sum -12.234 -2.316 0.643 12.468 Atomic orbital electron populations 1.21402 0.75532 1.03937 1.01350 1.46988 1.06405 1.05707 1.78638 1.22260 0.86178 0.88892 1.04228 1.21845 0.97153 0.83109 0.98493 0.86500 1.20568 0.79695 0.82149 0.89115 1.90723 1.61142 1.53058 1.36279 1.45506 1.52051 1.17628 1.18199 1.22251 0.93466 0.92941 0.87914 0.88847 1.22043 0.89374 0.93642 0.95297 1.44310 1.26324 1.07973 1.54188 1.19021 0.98302 0.97799 1.20605 0.90365 1.24776 0.99160 0.95833 1.00419 1.69907 1.39807 1.02282 1.45174 0.86176 0.82858 0.76749 0.79832 1.21562 1.21128 1.21126 1.21879 0.88418 0.90039 0.97304 1.23544 0.86462 0.91896 0.97624 0.91521 1.86370 1.37349 1.24882 1.88283 1.44812 1.06875 1.06328 1.79391 1.15791 0.81735 0.84596 0.77253 1.90944 1.75908 1.20936 1.58852 0.89593 0.92022 0.92084 0.88723 0.89376 0.75592 0.94948 0.93229 0.93625 0.92381 0.93468 0.77415 0.72371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.04 11.21 59.85 0.67 1.71 16 2 N -0.64 -7.48 3.36 -186.74 -0.63 -8.10 16 3 C 0.11 1.04 7.32 -3.16 -0.02 1.02 16 4 C 0.10 1.19 4.17 -68.20 -0.28 0.91 16 5 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 6 C 0.50 7.42 6.93 -10.98 -0.08 7.34 16 7 O -0.54 -9.92 16.24 5.56 0.09 -9.83 16 8 N -0.68 -10.21 4.82 -51.61 -0.25 -10.46 16 9 C 0.14 2.35 3.31 -65.66 -0.22 2.13 16 10 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 11 C 0.12 2.42 6.95 -2.41 -0.02 2.40 16 12 N -0.60 -13.89 3.39 -169.93 -0.58 -14.47 16 13 C -0.23 -5.97 10.28 -15.06 -0.15 -6.12 16 14 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 15 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 16 N -0.92 -24.98 10.31 55.49 0.57 -24.41 16 17 Si 0.91 21.00 29.55 -169.99 -5.02 15.97 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.15 3.13 5.14 -3.06 -0.02 3.11 16 22 C 0.06 1.05 4.11 -24.89 -0.10 0.95 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 24 O -0.56 -7.86 12.69 -35.23 -0.45 -8.31 16 25 N -0.71 -9.44 5.63 -59.33 -0.33 -9.77 16 26 C 0.71 10.60 8.60 -88.40 -0.76 9.84 16 27 O -0.59 -10.90 17.29 5.29 0.09 -10.81 16 28 H 0.09 0.84 7.52 -51.93 -0.39 0.45 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.86 7.72 -51.93 -0.40 0.46 16 33 H 0.41 5.82 8.40 -40.82 -0.34 5.48 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.06 1.34 7.30 -51.93 -0.38 0.96 16 38 H 0.05 1.12 7.50 -51.93 -0.39 0.73 16 39 H 0.38 4.00 9.11 45.56 0.42 4.42 16 40 H 0.43 5.45 8.96 -40.82 -0.37 5.08 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -34.38 335.29 -7.28 -41.65 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.75 Total: 10.43 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: -1.08 Total: 23.05 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -1.21 Total: -67.21 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.27 Total: -28.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.38 -7.28 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083700050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.608 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds