Wall clock time and date at job start Fri Apr 10 2020 17:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47058 * 125.41214 * 2 1 4 4 C 1.54105 * 103.86165 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.66966 * 241.34311 * 4 3 2 6 6 C 1.50705 * 110.54384 * 118.59434 * 4 3 2 7 7 O 1.21282 * 120.00184 * 264.10209 * 6 4 3 8 8 N 1.34780 * 119.99687 * 84.10574 * 6 4 3 9 9 C 1.46501 * 119.99477 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.88971 * 31.12355 * 9 8 6 11 11 C 1.55127 * 111.19199 * 267.18383 * 9 8 6 12 12 N 1.47424 * 104.72465 * 279.19479 * 11 9 8 13 13 C 1.36931 * 125.65107 * 155.81754 * 12 11 9 14 14 H 1.08002 * 120.00098 * 359.71936 * 13 12 11 15 15 C 1.38812 * 120.00429 * 179.71821 * 13 12 11 16 16 N 1.31624 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.27849 * 15 13 12 18 18 H 1.48497 * 109.47173 * 179.72427 * 17 15 13 19 19 H 1.48506 * 109.46866 * 299.71963 * 17 15 13 20 20 H 1.48501 * 109.47438 * 59.72083 * 17 15 13 21 21 C 1.47026 * 108.70283 * 335.55479 * 12 11 9 22 22 C 1.54322 * 107.27105 * 1.28275 * 21 12 11 23 23 H 1.09000 * 110.72605 * 263.83593 * 22 21 12 24 24 O 1.42900 * 110.72159 * 140.72986 * 22 21 12 25 25 N 1.47049 * 103.86256 * 0.02562 * 4 3 2 26 26 C 1.33942 * 109.18030 * 359.97438 * 25 4 3 27 27 O 1.21591 * 123.04068 * 180.02562 * 26 25 4 28 28 H 1.08999 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47194 * 299.97629 * 1 2 3 30 30 H 1.08998 * 109.47062 * 59.97820 * 1 2 3 31 31 H 1.09001 * 110.54530 * 61.40187 * 3 2 1 32 32 H 1.08995 * 110.54386 * 298.59547 * 3 2 1 33 33 H 0.97000 * 120.00271 * 359.97438 * 8 6 4 34 34 H 1.08998 * 110.49534 * 160.35510 * 11 9 8 35 35 H 1.08998 * 110.34323 * 37.95715 * 11 9 8 36 36 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.88585 * 120.70557 * 21 12 11 38 38 H 1.09006 * 109.87883 * 241.71762 * 21 12 11 39 39 H 0.96703 * 113.99125 * 61.46010 * 24 22 21 40 40 H 0.97000 * 125.40626 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2876 0.9463 0.8957 6 6 4.4909 1.0661 -1.2383 7 8 4.5394 0.3333 -2.2034 8 7 5.0992 2.2683 -1.2736 9 6 5.8194 2.6895 -2.4778 10 1 5.3626 2.2658 -3.3721 11 6 7.3223 2.3148 -2.3922 12 7 7.9266 3.3758 -1.5660 13 6 9.0786 3.2595 -0.8351 14 1 9.6232 2.3268 -0.8301 15 6 9.5467 4.3402 -0.1004 16 7 8.8833 5.4770 -0.1068 17 14 11.1225 4.1839 0.8905 18 1 11.4068 5.4709 1.5745 19 1 10.9657 3.1091 1.9033 20 1 12.2475 3.8473 -0.0185 21 6 7.0907 4.5815 -1.6618 22 6 5.8916 4.2368 -2.5700 23 1 6.0808 4.5535 -3.5956 24 8 4.6922 4.8328 -2.0717 25 7 3.5537 -0.8248 0.0003 26 6 2.2411 -1.0917 0.0002 27 8 1.7946 -2.2226 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 2.1406 1.7934 0.8962 32 1 2.1406 1.7933 -0.8961 33 1 5.0601 2.8545 -0.5018 34 1 7.7707 2.3060 -3.3857 35 1 7.4441 1.3441 -1.9115 36 1 9.2106 6.2324 0.4063 37 1 6.7359 4.8664 -0.6714 38 1 7.6664 5.3979 -2.0982 39 1 4.7179 5.7989 -2.0379 40 1 4.2620 -1.4875 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083700050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:10 Heat of formation + Delta-G solvation = -86.455284 kcal Electronic energy + Delta-G solvation = -25032.489007 eV Core-core repulsion = 21268.850279 eV Total energy + Delta-G solvation = -3763.638728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41587 -40.76303 -39.26884 -37.36747 -36.55905 -35.31886 -35.07685 -33.54752 -30.92180 -29.87788 -28.80038 -28.02410 -26.32660 -24.88049 -22.38940 -21.96721 -21.60190 -21.24068 -19.21534 -18.77072 -18.61360 -18.02374 -17.44313 -17.26533 -16.61795 -16.50516 -16.01932 -15.72663 -15.55274 -15.18101 -14.97986 -14.77584 -14.49889 -14.37203 -13.96052 -13.79470 -13.43767 -13.20779 -13.10913 -13.08630 -12.92985 -12.71593 -12.51451 -12.04384 -11.88524 -11.68406 -11.55909 -11.30833 -10.80460 -10.73309 -10.40289 -10.07122 -9.59085 -8.87852 -7.84906 -5.19359 1.33132 1.49518 1.50344 1.56564 1.65394 1.84874 2.18627 2.49472 2.89300 3.17770 3.28605 3.36570 3.57839 3.63814 3.88161 3.89859 3.99150 4.13829 4.40266 4.50507 4.55425 4.61829 4.66696 4.73356 4.84448 4.87468 4.91701 4.95121 5.43988 5.51586 5.52543 5.62453 5.74662 5.99285 6.18698 6.32695 6.56327 6.91473 7.11197 7.18261 7.42773 7.75366 8.37966 9.24073 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.003896 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.169630 B = 7185.976622 C = 7711.191101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.636 5.636 3 C 0.111 3.889 4 C 0.109 3.891 5 H 0.148 0.852 6 C 0.504 3.496 7 O -0.575 6.575 8 N -0.679 5.679 9 C 0.149 3.851 10 H 0.100 0.900 11 C 0.122 3.878 12 N -0.616 5.616 13 C -0.243 4.243 14 H 0.075 0.925 15 C -0.053 4.053 16 N -0.943 5.943 17 Si 0.971 3.029 18 H -0.293 1.293 19 H -0.279 1.279 20 H -0.284 1.284 21 C 0.160 3.840 22 C 0.089 3.911 23 H 0.084 0.916 24 O -0.558 6.558 25 N -0.715 5.715 26 C 0.694 3.306 27 O -0.634 6.634 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.414 0.586 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.248 0.752 37 H 0.035 0.965 38 H 0.014 0.986 39 H 0.396 0.604 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.510 -0.732 0.924 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.375 5.375 3 C -0.012 4.012 4 C -0.001 4.001 5 H 0.165 0.835 6 C 0.289 3.711 7 O -0.455 6.455 8 N -0.328 5.328 9 C 0.042 3.958 10 H 0.118 0.882 11 C -0.004 4.004 12 N -0.344 5.344 13 C -0.372 4.372 14 H 0.093 0.907 15 C -0.247 4.247 16 N -0.591 5.591 17 Si 0.800 3.200 18 H -0.219 1.219 19 H -0.205 1.205 20 H -0.210 1.210 21 C 0.035 3.965 22 C 0.028 3.972 23 H 0.102 0.898 24 O -0.365 6.365 25 N -0.375 5.375 26 C 0.394 3.606 27 O -0.516 6.516 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.251 0.749 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.247 0.753 40 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -14.966 -2.248 0.412 15.139 hybrid contribution 1.962 0.622 0.570 2.136 sum -13.003 -1.626 0.982 13.141 Atomic orbital electron populations 1.21641 0.73900 1.03596 1.03612 1.47208 1.07440 1.05382 1.77423 1.22504 0.84181 0.88140 1.06395 1.22038 0.98476 0.82018 0.97593 0.83473 1.21147 0.79007 0.81320 0.89629 1.90711 1.62601 1.54044 1.38096 1.45462 1.51624 1.17920 1.17843 1.22050 0.91547 0.93237 0.88975 0.88232 1.22132 0.91433 0.92239 0.94640 1.44504 1.26064 1.09597 1.54218 1.19296 0.99396 0.97714 1.20787 0.90700 1.25443 1.01795 0.95754 1.01662 1.70085 1.40802 1.02528 1.45720 0.85271 0.79765 0.76432 0.78520 1.21914 1.20538 1.21016 1.21679 0.89445 0.88510 0.96894 1.23169 0.85164 0.91602 0.97240 0.89794 1.86340 1.35488 1.26611 1.88063 1.44880 1.06490 1.07305 1.78789 1.16114 0.82396 0.84785 0.77337 1.90898 1.76759 1.22942 1.61033 0.91280 0.89037 0.90474 0.84634 0.89063 0.74930 0.94525 0.94387 0.94250 0.94690 0.96732 0.75346 0.72498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.71 11.21 127.77 1.43 3.14 16 2 N -0.64 -13.49 3.36 -863.45 -2.90 -16.39 16 3 C 0.11 1.74 7.32 86.65 0.63 2.38 16 4 C 0.11 2.21 4.17 44.52 0.19 2.39 16 5 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 6 C 0.50 14.01 6.93 87.66 0.61 14.62 16 7 O -0.58 -20.82 16.24 -3.04 -0.05 -20.87 16 8 N -0.68 -18.91 4.82 -435.58 -2.10 -21.01 16 9 C 0.15 4.72 3.31 46.46 0.15 4.88 16 10 H 0.10 3.13 7.54 -2.39 -0.02 3.12 16 11 C 0.12 4.71 6.95 86.93 0.60 5.32 16 12 N -0.62 -28.46 3.39 -691.55 -2.35 -30.81 16 13 C -0.24 -12.69 10.28 84.03 0.86 -11.82 16 14 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 15 C -0.05 -2.77 5.49 84.86 0.47 -2.30 16 16 N -0.94 -51.30 10.31 21.65 0.22 -51.08 16 17 Si 0.97 43.10 29.55 68.60 2.03 45.12 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 C 0.16 6.67 5.14 86.73 0.45 7.12 16 22 C 0.09 2.71 4.11 31.79 0.13 2.84 16 23 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 24 O -0.56 -13.88 12.69 -148.98 -1.89 -15.77 16 25 N -0.71 -18.21 5.63 -460.35 -2.59 -20.80 16 26 C 0.69 20.30 8.60 179.57 1.54 21.85 16 27 O -0.63 -23.83 17.29 -4.00 -0.07 -23.90 16 28 H 0.07 1.29 7.52 -2.39 -0.02 1.28 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.44 7.72 -2.39 -0.02 1.42 16 33 H 0.41 10.78 8.40 -92.71 -0.78 10.00 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.25 13.29 8.31 -92.70 -0.77 12.52 16 37 H 0.03 1.61 7.30 -2.39 -0.02 1.59 16 38 H 0.01 0.70 7.50 -2.38 -0.02 0.68 16 39 H 0.40 7.18 9.11 -74.05 -0.67 6.50 16 40 H 0.43 10.81 8.96 -92.71 -0.83 9.98 16 Total: -1.00 -75.65 335.29 -3.81 -79.46 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -1.18 Total: 25.65 kcal Atomic # 6 Polarization: 43.32 SS G_CDS: 7.07 Total: 50.39 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -9.71 Total: -140.08 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -2.01 Total: -60.55 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -75.65 -3.81 -79.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083700050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.995 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds