Wall clock time and date at job start Fri Apr 10 2020 17:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48497 * 109.47199 * 269.99940 * 3 2 1 5 5 H 1.48498 * 109.47169 * 30.00103 * 3 2 1 6 6 H 1.48503 * 109.47352 * 150.00057 * 3 2 1 7 7 C 1.38818 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99387 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99657 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47005 * 34.99944 * 10 9 7 12 12 C 1.52998 * 109.47100 * 275.00029 * 10 9 7 13 13 C 1.52999 * 109.46921 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47579 * 59.99872 * 13 12 10 15 15 C 1.52998 * 109.47099 * 300.00018 * 14 13 12 16 16 C 1.53001 * 109.47229 * 59.99781 * 15 14 13 17 17 H 1.09007 * 109.47145 * 59.99430 * 16 15 14 18 18 N 1.46497 * 109.47313 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99525 * 274.99614 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 H 1.09003 * 109.52260 * 305.14311 * 21 19 18 23 23 C 1.53135 * 109.52584 * 65.27851 * 21 19 18 24 24 O 1.43077 * 109.15438 * 175.21507 * 23 21 19 25 25 C 1.43081 * 113.59081 * 302.05017 * 24 23 21 26 26 C 1.53135 * 109.15211 * 57.94857 * 25 24 23 27 27 O 1.43077 * 109.15438 * 304.68833 * 26 25 24 28 28 H 0.96993 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00117 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47333 * 60.00549 * 12 10 9 31 31 H 1.09002 * 109.47122 * 299.99843 * 12 10 9 32 32 H 1.08999 * 109.47539 * 299.99851 * 13 12 10 33 33 H 1.09003 * 109.47063 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.47276 * 180.02562 * 14 13 12 35 35 H 1.09002 * 109.47185 * 60.00042 * 14 13 12 36 36 H 1.09002 * 109.47122 * 300.00063 * 15 14 13 37 37 H 1.08998 * 109.47333 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00580 * 95.00360 * 18 16 15 39 39 H 1.09000 * 109.52526 * 295.11418 * 23 21 19 40 40 H 1.08997 * 109.52967 * 55.24909 * 23 21 19 41 41 H 1.08996 * 109.52312 * 177.85447 * 25 24 23 42 42 H 1.09006 * 109.51958 * 297.97911 * 25 24 23 43 43 H 1.09001 * 109.52888 * 64.59200 * 26 25 24 44 44 H 1.09000 * 109.52526 * 184.78922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5900 12 6 2.4220 -4.0355 -1.4365 13 6 3.1865 -5.3608 -1.4365 14 6 2.3089 -6.4560 -0.8270 15 6 1.9450 -6.0772 0.6100 16 6 1.1805 -4.7519 0.6100 17 1 0.2698 -4.8577 0.0204 18 7 0.8326 -4.3889 1.9860 19 6 -0.2855 -4.8853 2.5516 20 8 -1.0034 -5.6328 1.9217 21 6 -0.6402 -4.5168 3.9692 22 1 0.1958 -4.7539 4.6273 23 6 -0.9443 -3.0179 4.0476 24 8 -1.3876 -2.6974 5.3697 25 6 -2.5442 -3.4331 5.7799 26 6 -2.2401 -4.9319 5.7015 27 8 -1.7968 -5.2525 4.3794 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 3.0470 -3.2552 -1.8708 31 1 1.5113 -4.1418 -2.0259 32 1 4.0972 -5.2551 -0.8469 33 1 3.4454 -5.6310 -2.4603 34 1 2.8538 -7.4000 -0.8266 35 1 1.3982 -6.5619 -1.4166 36 1 2.8557 -5.9713 1.1995 37 1 1.3195 -6.8571 1.0440 38 1 1.4068 -3.7912 2.4900 39 1 -0.0421 -2.4507 3.8185 40 1 -1.7249 -2.7665 3.3297 41 1 -2.8007 -3.1666 6.8052 42 1 -3.3797 -3.1949 5.1216 43 1 -1.4587 -5.1832 6.4187 44 1 -3.1422 -5.4991 5.9306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085137166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:35 Heat of formation + Delta-G solvation = -125.191065 kcal Electronic energy + Delta-G solvation = -25697.236019 eV Core-core repulsion = 22035.457925 eV Total energy + Delta-G solvation = -3661.778094 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42099 -39.21591 -37.67891 -35.98123 -34.07899 -33.80305 -31.83117 -31.16009 -29.43927 -28.22866 -27.35261 -24.99541 -23.74921 -22.57387 -21.50248 -21.08915 -20.16162 -19.51200 -17.61459 -17.15039 -16.85584 -16.45246 -16.01181 -15.62482 -15.36481 -15.01931 -14.56088 -14.27842 -13.96891 -13.74215 -13.59215 -13.36627 -13.06148 -12.98285 -12.62268 -12.38410 -12.11222 -12.07703 -11.61092 -11.11114 -10.94054 -10.91094 -10.85161 -10.77315 -10.63381 -10.54917 -10.33564 -10.19131 -9.78248 -9.67453 -9.48724 -9.20303 -8.94651 -8.63838 -7.02418 -5.81409 -3.11347 2.81512 2.95675 3.39649 3.45123 3.47059 3.66724 4.00564 4.48573 4.52807 4.80259 4.84489 4.94489 5.01401 5.04726 5.09539 5.15705 5.29871 5.39746 5.49698 5.50501 5.54938 5.67121 5.69753 5.79666 5.85716 5.87355 5.93382 5.96223 6.10157 6.30405 6.43687 6.45625 6.47790 6.56272 6.78556 6.84260 6.88544 6.90042 7.06554 7.64801 7.82684 8.35608 8.49851 9.47685 10.03354 10.38760 11.40317 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.006024 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.939075 B = 4646.630613 C = 6998.302932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.142 3.858 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.524 3.476 20 O -0.526 6.526 21 C 0.040 3.960 22 H 0.090 0.910 23 C 0.038 3.962 24 O -0.373 6.373 25 C 0.019 3.981 26 C 0.024 3.976 27 O -0.352 6.352 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.403 0.597 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -11.106 8.778 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.037 3.963 17 H 0.103 0.897 18 N -0.354 5.354 19 C 0.308 3.692 20 O -0.401 6.401 21 C -0.022 4.022 22 H 0.107 0.893 23 C -0.039 4.039 24 O -0.292 6.292 25 C -0.058 4.058 26 C -0.053 4.053 27 O -0.270 6.270 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.238 0.762 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.677 -11.477 8.345 14.206 hybrid contribution 0.367 1.303 0.217 1.371 sum 1.044 -10.174 8.562 13.338 Atomic orbital electron populations 1.69662 1.05054 1.25684 1.57207 1.24726 0.95436 0.97583 1.02831 0.86248 0.78653 0.84069 0.77516 1.21791 1.21838 1.20798 1.19193 0.90908 0.83957 1.43227 0.91194 1.42421 1.05788 0.99457 1.88588 1.20470 0.93901 0.85728 0.93650 0.93062 1.22218 0.99984 0.95542 0.99643 1.21584 0.98518 0.95671 0.99992 1.21472 0.99938 0.98046 0.95723 1.21879 1.00011 0.97214 0.97260 1.21337 0.99136 0.94132 0.81655 0.89687 1.45814 1.24745 1.49271 1.15615 1.19779 0.81287 0.80986 0.87176 1.90699 1.50276 1.35621 1.63507 1.22598 0.90463 0.93719 0.95430 0.89252 1.23193 1.02782 0.92939 0.84976 1.88126 1.45862 1.63549 1.31649 1.23284 0.89051 0.91655 1.01768 1.23311 1.00945 0.96204 0.84810 1.88217 1.44802 1.62723 1.31242 0.93483 0.78151 0.91557 0.92436 0.92371 0.92673 0.92360 0.91941 0.91963 0.91908 0.76178 0.86327 0.90876 0.87758 0.91827 0.92109 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.23 9.93 -15.05 -0.15 -6.38 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.63 4.95 -53.42 -0.26 -16.90 16 10 C 0.17 3.14 2.29 -67.93 -0.16 2.99 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.24 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 16 C 0.14 2.36 1.97 -67.93 -0.13 2.22 16 17 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 18 N -0.70 -11.13 4.88 -53.80 -0.26 -11.39 16 19 C 0.52 8.96 7.15 -10.98 -0.08 8.88 16 20 O -0.53 -10.93 16.17 -14.26 -0.23 -11.16 16 21 C 0.04 0.58 3.25 -27.81 -0.09 0.48 16 22 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 23 C 0.04 0.57 6.29 37.23 0.23 0.81 16 24 O -0.37 -5.32 10.85 -48.80 -0.53 -5.85 16 25 C 0.02 0.22 7.05 37.23 0.26 0.48 16 26 C 0.02 0.26 7.05 37.23 0.26 0.53 16 27 O -0.35 -5.38 10.03 -62.51 -0.63 -6.01 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.38 9.83 7.80 -40.82 -0.32 9.51 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 5.87 8.52 -40.82 -0.35 5.52 16 39 H 0.12 1.74 8.06 -51.93 -0.42 1.32 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -31.55 354.31 -8.79 -40.34 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.36 Total: 13.24 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.56 Total: 2.01 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.20 Total: -54.49 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.39 Total: -23.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.55 -8.79 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085137166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.849 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds