Wall clock time and date at job start Fri Apr 10 2020 17:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48497 * 109.47199 * 269.99940 * 3 2 1 5 5 H 1.48498 * 109.47169 * 30.00103 * 3 2 1 6 6 H 1.48503 * 109.47352 * 150.00057 * 3 2 1 7 7 C 1.38818 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99387 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99657 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47005 * 34.99944 * 10 9 7 12 12 C 1.52998 * 109.47100 * 275.00029 * 10 9 7 13 13 C 1.52999 * 109.46921 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47579 * 59.99872 * 13 12 10 15 15 C 1.52998 * 109.47099 * 300.00018 * 14 13 12 16 16 C 1.53001 * 109.47229 * 59.99781 * 15 14 13 17 17 H 1.09007 * 109.47145 * 59.99430 * 16 15 14 18 18 N 1.46497 * 109.47313 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99525 * 274.99614 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 H 1.09003 * 109.52260 * 305.14311 * 21 19 18 23 23 C 1.53135 * 109.52584 * 65.27851 * 21 19 18 24 24 O 1.43077 * 109.15438 * 175.21507 * 23 21 19 25 25 C 1.43081 * 113.59081 * 302.05017 * 24 23 21 26 26 C 1.53135 * 109.15211 * 57.94857 * 25 24 23 27 27 O 1.43077 * 109.15438 * 304.68833 * 26 25 24 28 28 H 0.96993 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00117 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47333 * 60.00549 * 12 10 9 31 31 H 1.09002 * 109.47122 * 299.99843 * 12 10 9 32 32 H 1.08999 * 109.47539 * 299.99851 * 13 12 10 33 33 H 1.09003 * 109.47063 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.47276 * 180.02562 * 14 13 12 35 35 H 1.09002 * 109.47185 * 60.00042 * 14 13 12 36 36 H 1.09002 * 109.47122 * 300.00063 * 15 14 13 37 37 H 1.08998 * 109.47333 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00580 * 95.00360 * 18 16 15 39 39 H 1.09000 * 109.52526 * 295.11418 * 23 21 19 40 40 H 1.08997 * 109.52967 * 55.24909 * 23 21 19 41 41 H 1.08996 * 109.52312 * 177.85447 * 25 24 23 42 42 H 1.09006 * 109.51958 * 297.97911 * 25 24 23 43 43 H 1.09001 * 109.52888 * 64.59200 * 26 25 24 44 44 H 1.09000 * 109.52526 * 184.78922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5900 12 6 2.4220 -4.0355 -1.4365 13 6 3.1865 -5.3608 -1.4365 14 6 2.3089 -6.4560 -0.8270 15 6 1.9450 -6.0772 0.6100 16 6 1.1805 -4.7519 0.6100 17 1 0.2698 -4.8577 0.0204 18 7 0.8326 -4.3889 1.9860 19 6 -0.2855 -4.8853 2.5516 20 8 -1.0034 -5.6328 1.9217 21 6 -0.6402 -4.5168 3.9692 22 1 0.1958 -4.7539 4.6273 23 6 -0.9443 -3.0179 4.0476 24 8 -1.3876 -2.6974 5.3697 25 6 -2.5442 -3.4331 5.7799 26 6 -2.2401 -4.9319 5.7015 27 8 -1.7968 -5.2525 4.3794 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 3.0470 -3.2552 -1.8708 31 1 1.5113 -4.1418 -2.0259 32 1 4.0972 -5.2551 -0.8469 33 1 3.4454 -5.6310 -2.4603 34 1 2.8538 -7.4000 -0.8266 35 1 1.3982 -6.5619 -1.4166 36 1 2.8557 -5.9713 1.1995 37 1 1.3195 -6.8571 1.0440 38 1 1.4068 -3.7912 2.4900 39 1 -0.0421 -2.4507 3.8185 40 1 -1.7249 -2.7665 3.3297 41 1 -2.8007 -3.1666 6.8052 42 1 -3.3797 -3.1949 5.1216 43 1 -1.4587 -5.1832 6.4187 44 1 -3.1422 -5.4991 5.9306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085137166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:35 Heat of formation + Delta-G solvation = -147.397426 kcal Electronic energy + Delta-G solvation = -25698.198959 eV Core-core repulsion = 22035.457925 eV Total energy + Delta-G solvation = -3662.741034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64445 -40.45422 -39.04259 -37.08475 -35.79935 -35.21484 -33.04672 -32.83957 -30.65317 -29.59587 -28.68827 -26.13103 -25.59115 -23.75792 -22.67936 -22.43483 -21.50022 -20.79342 -19.24345 -18.58342 -18.14206 -17.58697 -17.16143 -16.87132 -16.64790 -16.40723 -15.96695 -15.64329 -15.46360 -15.16240 -14.84306 -14.60534 -14.51874 -14.26892 -13.98437 -13.63771 -13.51952 -13.26106 -12.91259 -12.79711 -12.67561 -12.23512 -12.16103 -12.02901 -12.01143 -11.92137 -11.69753 -11.58613 -11.42738 -11.11137 -10.96454 -10.71440 -10.30999 -10.00389 -8.97505 -7.89138 -5.17800 1.45927 1.50059 1.50857 1.58681 1.77225 2.58519 2.61489 2.90193 3.40975 3.44380 3.61670 3.71358 3.79003 3.84204 3.94960 4.10587 4.14487 4.21956 4.27298 4.32995 4.44887 4.45347 4.50812 4.55998 4.60679 4.70957 4.76167 4.78493 4.96223 5.02433 5.15538 5.25347 5.30907 5.32047 5.46796 5.53276 5.57858 5.66704 5.84292 5.86175 6.30253 6.51569 7.16667 7.37673 8.10940 8.35187 9.33558 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.006024 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.939075 B = 4646.630613 C = 6998.302932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.964 3.036 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.266 1.266 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.173 3.827 11 H 0.063 0.937 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.115 4.115 16 C 0.148 3.852 17 H 0.052 0.948 18 N -0.696 5.696 19 C 0.520 3.480 20 O -0.569 6.569 21 C 0.050 3.950 22 H 0.121 0.879 23 C 0.047 3.953 24 O -0.384 6.384 25 C 0.012 3.988 26 C 0.021 3.979 27 O -0.382 6.382 28 H 0.247 0.753 29 H 0.368 0.632 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.411 0.589 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.139 0.861 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -12.311 10.146 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.222 1.222 5 H -0.229 1.229 6 H -0.190 1.190 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.081 0.919 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.154 4.154 16 C 0.043 3.957 17 H 0.070 0.930 18 N -0.347 5.347 19 C 0.306 3.694 20 O -0.447 6.447 21 C -0.012 4.012 22 H 0.138 0.862 23 C -0.031 4.031 24 O -0.303 6.303 25 C -0.064 4.064 26 C -0.055 4.055 27 O -0.300 6.300 28 H 0.056 0.944 29 H 0.200 0.800 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.247 0.753 39 H 0.135 0.865 40 H 0.061 0.939 41 H 0.157 0.843 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.825 -12.708 9.727 16.251 hybrid contribution -0.310 1.618 -0.188 1.658 sum 2.515 -11.090 9.539 14.843 Atomic orbital electron populations 1.69828 1.06588 1.25625 1.59813 1.25435 0.96082 1.00672 1.04196 0.85269 0.77947 0.80266 0.77037 1.22202 1.22938 1.19035 1.19564 0.91398 0.84754 1.40319 0.90186 1.42584 1.05141 1.00705 1.88565 1.20676 0.93915 0.84158 0.94841 0.91893 1.22097 0.99480 0.97501 0.97855 1.21515 0.98411 0.93273 1.01545 1.21480 0.99807 0.99151 0.94444 1.21817 1.00151 0.94877 0.98585 1.21218 0.97754 0.95209 0.81498 0.92980 1.45784 1.24625 1.48942 1.15306 1.20292 0.80772 0.80188 0.88158 1.90670 1.51547 1.37725 1.64787 1.22514 0.91528 0.93032 0.94078 0.86196 1.22985 1.01736 0.93360 0.85042 1.88107 1.47073 1.64392 1.30690 1.23571 0.87638 0.91828 1.03340 1.23609 1.02600 0.96129 0.83182 1.88180 1.45061 1.63078 1.33725 0.94431 0.80049 0.93035 0.94235 0.90751 0.90960 0.89430 0.93007 0.89873 0.92589 0.75263 0.86509 0.93854 0.84321 0.92770 0.90107 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.85 13.06 21.65 0.28 -57.57 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.96 44.72 29.55 68.60 2.03 46.74 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.23 -11.75 9.93 84.03 0.83 -10.92 16 8 H 0.08 3.90 7.83 -2.92 -0.02 3.88 16 9 N -0.73 -34.19 4.95 -322.94 -1.60 -35.79 16 10 C 0.17 6.18 2.29 44.99 0.10 6.29 16 11 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 12 C -0.13 -4.24 5.50 30.59 0.17 -4.08 16 13 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 14 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 15 C -0.12 -3.01 5.49 30.59 0.17 -2.84 16 16 C 0.15 4.91 1.97 44.99 0.09 5.00 16 17 H 0.05 2.09 7.58 -2.38 -0.02 2.07 16 18 N -0.70 -21.99 4.88 -442.52 -2.16 -24.15 16 19 C 0.52 18.04 7.15 87.66 0.63 18.66 16 20 O -0.57 -24.40 16.17 15.91 0.26 -24.14 16 21 C 0.05 1.42 3.25 29.89 0.10 1.52 16 22 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 23 C 0.05 1.41 6.29 72.03 0.45 1.86 16 24 O -0.38 -10.61 10.85 -136.01 -1.48 -12.09 16 25 C 0.01 0.26 7.05 72.03 0.51 0.76 16 26 C 0.02 0.41 7.05 72.03 0.51 0.91 16 27 O -0.38 -11.40 10.03 -122.90 -1.23 -12.64 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.37 19.58 7.80 -92.71 -0.72 18.86 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.41 11.69 8.52 -92.71 -0.79 10.90 16 39 H 0.12 3.49 8.06 -2.39 -0.02 3.47 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.11 354.31 -0.03 -70.13 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -0.51 Total: 40.59 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.38 Total: 8.91 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.47 Total: -117.50 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -2.45 Total: -48.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.11 -0.03 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085137166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.265 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds