Wall clock time and date at job start Fri Apr 10 2020 17:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99589 * 2 1 4 4 H 1.48500 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47165 * 299.99801 * 3 2 1 6 6 H 1.48493 * 109.47435 * 60.00294 * 3 2 1 7 7 C 1.38811 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99426 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47802 * 34.99726 * 10 9 7 12 12 C 1.53001 * 109.47051 * 274.99339 * 10 9 7 13 13 C 1.52998 * 109.47014 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47315 * 60.00290 * 13 12 10 15 15 C 1.53001 * 109.46843 * 299.99815 * 14 13 12 16 16 C 1.53001 * 109.47371 * 60.00034 * 15 14 13 17 17 H 1.08997 * 109.47438 * 59.99640 * 16 15 14 18 18 N 1.46493 * 109.47355 * 180.02562 * 16 15 14 19 19 C 1.34782 * 119.99971 * 274.99520 * 18 16 15 20 20 O 1.21279 * 119.99738 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00104 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.52186 * 55.13445 * 21 19 18 23 23 C 1.53137 * 109.52396 * 295.00226 * 21 19 18 24 24 O 1.43075 * 109.14741 * 184.78532 * 23 21 19 25 25 C 1.43073 * 113.59228 * 57.95607 * 24 23 21 26 26 C 1.53137 * 109.15045 * 302.04225 * 25 24 23 27 27 O 1.43073 * 109.52265 * 175.33132 * 21 19 18 28 28 H 0.96999 * 120.00070 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00101 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46919 * 60.00334 * 12 10 9 31 31 H 1.09001 * 109.47128 * 300.00041 * 12 10 9 32 32 H 1.08997 * 109.47589 * 300.00234 * 13 12 10 33 33 H 1.08998 * 109.47192 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47135 * 179.97438 * 14 13 12 35 35 H 1.08997 * 109.46837 * 59.99484 * 14 13 12 36 36 H 1.09001 * 109.47128 * 300.00243 * 15 14 13 37 37 H 1.09003 * 109.47396 * 179.97438 * 15 14 13 38 38 H 0.97002 * 120.00358 * 95.00374 * 18 16 15 39 39 H 1.09003 * 109.52475 * 64.88815 * 23 21 19 40 40 H 1.08995 * 109.58330 * 304.72208 * 23 21 19 41 41 H 1.08998 * 109.52764 * 61.94868 * 25 24 23 42 42 H 1.09008 * 109.52416 * 182.14588 * 25 24 23 43 43 H 1.09001 * 109.52846 * 295.41259 * 26 25 24 44 44 H 1.09003 * 109.52475 * 175.21271 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6566 -0.0016 11 1 2.9686 -3.5507 0.5885 12 6 2.4232 -4.0348 -1.4385 13 6 3.1878 -5.3601 -1.4386 14 6 2.3097 -6.4556 -0.8302 15 6 1.9448 -6.0774 0.6067 16 6 1.1802 -4.7521 0.6069 17 1 0.2700 -4.8577 0.0166 18 7 0.8314 -4.3897 1.9827 19 6 -0.2871 -4.8863 2.5475 20 8 -1.0044 -5.6336 1.9167 21 6 -0.6456 -4.5140 3.9631 22 1 -0.6879 -3.4286 4.0546 23 6 0.4125 -5.0677 4.9216 24 8 0.0076 -4.8071 6.2689 25 6 -1.2664 -5.3664 6.6023 26 6 -2.3245 -4.8126 5.6438 27 8 -1.9196 -5.0732 4.2965 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3880 -0.0016 30 1 3.0484 -3.2543 -1.8720 31 1 1.5129 -4.1410 -2.0286 32 1 4.0980 -5.2545 -0.8484 33 1 3.4481 -5.6293 -2.4622 34 1 2.8543 -7.3998 -0.8307 35 1 1.3995 -6.5611 -1.4204 36 1 2.8551 -5.9717 1.1969 37 1 1.3189 -6.8575 1.0400 38 1 1.4053 -3.7922 2.4873 39 1 1.3690 -4.5821 4.7283 40 1 0.5132 -6.1428 4.7730 41 1 -1.2234 -6.4516 6.5099 42 1 -1.5258 -5.0970 7.6262 43 1 -2.4241 -3.7374 5.7927 44 1 -3.2811 -5.2983 5.8371 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085137167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:38 Heat of formation + Delta-G solvation = -125.142846 kcal Electronic energy + Delta-G solvation = -25558.932153 eV Core-core repulsion = 21897.156150 eV Total energy + Delta-G solvation = -3661.776003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47850 -39.25518 -37.69762 -36.06831 -34.07650 -33.80974 -31.91020 -31.15875 -29.46182 -28.27933 -27.39708 -25.09699 -23.75159 -22.57955 -21.61745 -21.08369 -20.13496 -19.54625 -17.63669 -17.18057 -16.91352 -16.55696 -16.13434 -15.61402 -15.47388 -15.04050 -14.59020 -14.32105 -14.04144 -13.68178 -13.57941 -13.43294 -13.15302 -12.98640 -12.62123 -12.48129 -12.12819 -12.09839 -11.73069 -11.11072 -10.96143 -10.95238 -10.86717 -10.77941 -10.74172 -10.57445 -10.33664 -10.15977 -9.77914 -9.67349 -9.52832 -9.26815 -8.95006 -8.64108 -7.01990 -5.81045 -3.11155 2.79268 2.97052 3.39203 3.45098 3.47513 3.49186 3.97010 4.39231 4.52764 4.75506 4.79147 4.81615 4.96180 5.03462 5.08428 5.13740 5.27367 5.29486 5.41363 5.49683 5.50370 5.55640 5.60652 5.69397 5.79297 5.86983 5.93302 5.95725 6.10036 6.29394 6.43699 6.45174 6.47597 6.56240 6.71411 6.77761 6.84069 6.88405 7.06549 7.65173 7.82567 8.35960 8.49714 9.47913 10.04033 10.39123 11.40895 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005205 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.576922 B = 5377.972195 C = 7168.041428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.142 3.858 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.525 3.475 20 O -0.525 6.525 21 C 0.037 3.963 22 H 0.098 0.902 23 C 0.040 3.960 24 O -0.374 6.374 25 C 0.021 3.979 26 C 0.022 3.978 27 O -0.350 6.350 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.403 0.597 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 -12.722 9.477 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.037 3.963 17 H 0.103 0.897 18 N -0.354 5.354 19 C 0.309 3.691 20 O -0.401 6.401 21 C -0.025 4.025 22 H 0.116 0.884 23 C -0.038 4.038 24 O -0.292 6.292 25 C -0.056 4.056 26 C -0.055 4.055 27 O -0.268 6.268 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.238 0.762 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.699 -13.099 9.035 16.003 hybrid contribution 0.288 1.396 0.200 1.439 sum 1.987 -11.703 9.235 15.040 Atomic orbital electron populations 1.69683 1.05103 1.25578 1.57328 1.24743 0.95434 0.97646 1.02869 0.86165 0.78778 0.84304 0.77191 1.20571 1.21911 1.21928 1.19247 0.90947 0.83968 1.43048 0.91102 1.42437 1.05835 0.99492 1.88547 1.20472 0.93880 0.85725 0.93666 0.93070 1.22220 0.99991 0.95549 0.99642 1.21582 0.98506 0.95659 1.00008 1.21471 0.99947 0.98042 0.95726 1.21879 0.99981 0.97182 0.97288 1.21340 0.99146 0.94121 0.81681 0.89679 1.45811 1.24733 1.49314 1.15577 1.19752 0.81290 0.80926 0.87171 1.90697 1.50114 1.35684 1.63589 1.22611 0.86279 0.99880 0.93735 0.88409 1.23140 0.97507 1.01280 0.81862 1.88118 1.35667 1.77381 1.28081 1.23304 0.84074 0.98367 0.99806 1.23328 0.98425 1.01364 0.82369 1.88227 1.33704 1.76691 1.28169 0.93525 0.78120 0.91554 0.92429 0.92368 0.92665 0.92350 0.91939 0.91942 0.91929 0.76184 0.86994 0.91558 0.91983 0.87596 0.91747 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.72 -16.96 4.95 -53.42 -0.26 -17.23 16 10 C 0.17 3.17 2.29 -67.92 -0.16 3.02 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.26 5.50 -26.73 -0.15 -2.40 16 13 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 15 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 16 C 0.14 2.36 1.98 -67.93 -0.13 2.22 16 17 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 18 N -0.70 -11.15 4.87 -53.80 -0.26 -11.41 16 19 C 0.52 8.98 7.15 -10.98 -0.08 8.90 16 20 O -0.53 -10.93 16.17 -14.26 -0.23 -11.16 16 21 C 0.04 0.53 3.25 -27.81 -0.09 0.44 16 22 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 23 C 0.04 0.47 6.29 37.23 0.23 0.70 16 24 O -0.37 -4.50 10.85 -48.81 -0.53 -5.03 16 25 C 0.02 0.20 7.05 37.23 0.26 0.47 16 26 C 0.02 0.24 7.05 37.23 0.26 0.50 16 27 O -0.35 -5.39 10.03 -62.51 -0.63 -6.02 16 28 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 5.89 8.51 -40.82 -0.35 5.54 16 39 H 0.11 1.12 8.05 -51.93 -0.42 0.70 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.38 354.29 -8.79 -41.17 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -7.36 Total: 12.55 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.56 Total: 1.81 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.20 Total: -55.37 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.39 Total: -22.22 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.38 -8.79 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085137167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.973 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds