Wall clock time and date at job start Fri Apr 10 2020 17:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99589 * 2 1 4 4 H 1.48500 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47165 * 299.99801 * 3 2 1 6 6 H 1.48493 * 109.47435 * 60.00294 * 3 2 1 7 7 C 1.38811 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99426 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47802 * 34.99726 * 10 9 7 12 12 C 1.53001 * 109.47051 * 274.99339 * 10 9 7 13 13 C 1.52998 * 109.47014 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47315 * 60.00290 * 13 12 10 15 15 C 1.53001 * 109.46843 * 299.99815 * 14 13 12 16 16 C 1.53001 * 109.47371 * 60.00034 * 15 14 13 17 17 H 1.08997 * 109.47438 * 59.99640 * 16 15 14 18 18 N 1.46493 * 109.47355 * 180.02562 * 16 15 14 19 19 C 1.34782 * 119.99971 * 274.99520 * 18 16 15 20 20 O 1.21279 * 119.99738 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00104 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.52186 * 55.13445 * 21 19 18 23 23 C 1.53137 * 109.52396 * 295.00226 * 21 19 18 24 24 O 1.43075 * 109.14741 * 184.78532 * 23 21 19 25 25 C 1.43073 * 113.59228 * 57.95607 * 24 23 21 26 26 C 1.53137 * 109.15045 * 302.04225 * 25 24 23 27 27 O 1.43073 * 109.52265 * 175.33132 * 21 19 18 28 28 H 0.96999 * 120.00070 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00101 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46919 * 60.00334 * 12 10 9 31 31 H 1.09001 * 109.47128 * 300.00041 * 12 10 9 32 32 H 1.08997 * 109.47589 * 300.00234 * 13 12 10 33 33 H 1.08998 * 109.47192 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47135 * 179.97438 * 14 13 12 35 35 H 1.08997 * 109.46837 * 59.99484 * 14 13 12 36 36 H 1.09001 * 109.47128 * 300.00243 * 15 14 13 37 37 H 1.09003 * 109.47396 * 179.97438 * 15 14 13 38 38 H 0.97002 * 120.00358 * 95.00374 * 18 16 15 39 39 H 1.09003 * 109.52475 * 64.88815 * 23 21 19 40 40 H 1.08995 * 109.58330 * 304.72208 * 23 21 19 41 41 H 1.08998 * 109.52764 * 61.94868 * 25 24 23 42 42 H 1.09008 * 109.52416 * 182.14588 * 25 24 23 43 43 H 1.09001 * 109.52846 * 295.41259 * 26 25 24 44 44 H 1.09003 * 109.52475 * 175.21271 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6566 -0.0016 11 1 2.9686 -3.5507 0.5885 12 6 2.4232 -4.0348 -1.4385 13 6 3.1878 -5.3601 -1.4386 14 6 2.3097 -6.4556 -0.8302 15 6 1.9448 -6.0774 0.6067 16 6 1.1802 -4.7521 0.6069 17 1 0.2700 -4.8577 0.0166 18 7 0.8314 -4.3897 1.9827 19 6 -0.2871 -4.8863 2.5475 20 8 -1.0044 -5.6336 1.9167 21 6 -0.6456 -4.5140 3.9631 22 1 -0.6879 -3.4286 4.0546 23 6 0.4125 -5.0677 4.9216 24 8 0.0076 -4.8071 6.2689 25 6 -1.2664 -5.3664 6.6023 26 6 -2.3245 -4.8126 5.6438 27 8 -1.9196 -5.0732 4.2965 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3880 -0.0016 30 1 3.0484 -3.2543 -1.8720 31 1 1.5129 -4.1410 -2.0286 32 1 4.0980 -5.2545 -0.8484 33 1 3.4481 -5.6293 -2.4622 34 1 2.8543 -7.3998 -0.8307 35 1 1.3995 -6.5611 -1.4204 36 1 2.8551 -5.9717 1.1969 37 1 1.3189 -6.8575 1.0400 38 1 1.4053 -3.7922 2.4873 39 1 1.3690 -4.5821 4.7283 40 1 0.5132 -6.1428 4.7730 41 1 -1.2234 -6.4516 6.5099 42 1 -1.5258 -5.0970 7.6262 43 1 -2.4241 -3.7374 5.7927 44 1 -3.2811 -5.2983 5.8371 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085137167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:37 Heat of formation + Delta-G solvation = -148.153463 kcal Electronic energy + Delta-G solvation = -25559.929968 eV Core-core repulsion = 21897.156150 eV Total energy + Delta-G solvation = -3662.773818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64521 -40.45135 -39.04384 -37.08184 -35.81366 -35.21669 -33.06358 -32.83231 -30.65681 -29.60721 -28.69522 -26.11718 -25.60237 -23.73658 -22.73824 -22.42756 -21.45690 -20.82694 -19.25546 -18.59210 -18.13710 -17.60862 -17.17684 -16.85943 -16.60391 -16.43625 -15.97397 -15.65668 -15.42733 -15.24679 -14.76470 -14.61695 -14.52925 -14.28002 -14.02348 -13.63108 -13.51383 -13.25793 -12.91371 -12.84808 -12.64884 -12.20699 -12.16608 -12.02235 -12.00060 -11.93583 -11.67847 -11.59149 -11.42941 -11.10656 -10.98920 -10.73905 -10.29336 -10.00849 -8.99613 -7.91209 -5.20278 1.45652 1.48590 1.49816 1.58942 1.78545 2.57275 2.62832 2.89652 3.40424 3.43411 3.61901 3.70678 3.82208 3.84124 3.95787 4.12148 4.14252 4.23862 4.27318 4.32355 4.44538 4.45973 4.50364 4.51726 4.60531 4.70746 4.76269 4.78225 4.96314 5.02231 5.15720 5.25512 5.30980 5.31998 5.46538 5.53122 5.56338 5.66471 5.84700 5.87068 6.28741 6.51358 7.16493 7.35486 8.09161 8.32976 9.32222 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005205 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.576922 B = 5377.972195 C = 7168.041428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.301 1.301 6 H -0.297 1.297 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.733 5.733 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.115 4.115 16 C 0.148 3.852 17 H 0.050 0.950 18 N -0.696 5.696 19 C 0.522 3.478 20 O -0.569 6.569 21 C 0.040 3.960 22 H 0.094 0.906 23 C 0.048 3.952 24 O -0.385 6.385 25 C 0.020 3.980 26 C 0.015 3.985 27 O -0.383 6.383 28 H 0.247 0.753 29 H 0.368 0.632 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.411 0.589 39 H 0.130 0.870 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.136 0.864 43 H 0.065 0.935 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -13.853 10.681 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.267 4.267 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.229 1.229 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.100 0.900 9 N -0.372 5.372 10 C 0.064 3.936 11 H 0.082 0.918 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.154 4.154 16 C 0.043 3.957 17 H 0.069 0.931 18 N -0.346 5.346 19 C 0.307 3.693 20 O -0.448 6.448 21 C -0.021 4.021 22 H 0.112 0.888 23 C -0.029 4.029 24 O -0.303 6.303 25 C -0.056 4.056 26 C -0.062 4.062 27 O -0.302 6.302 28 H 0.056 0.944 29 H 0.199 0.801 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.148 0.852 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.049 -14.258 10.253 18.022 hybrid contribution -0.456 1.686 -0.174 1.755 sum 3.593 -12.572 10.078 16.509 Atomic orbital electron populations 1.69851 1.06761 1.25657 1.60033 1.25489 0.96102 1.00901 1.04215 0.85153 0.78516 0.80336 0.76229 1.18623 1.22923 1.22436 1.19639 0.91475 0.84766 1.40073 0.90008 1.42624 1.05165 1.00848 1.88549 1.20696 0.93934 0.84096 0.94911 0.91783 1.22096 0.99468 0.97570 0.97802 1.21514 0.98418 0.93211 1.01582 1.21483 0.99780 0.99163 0.94489 1.21817 1.00194 0.94750 0.98594 1.21222 0.97710 0.95279 0.81489 0.93126 1.45780 1.24610 1.49001 1.15256 1.20264 0.80765 0.80116 0.88127 1.90667 1.51422 1.37798 1.64878 1.22574 0.87323 0.99621 0.92626 0.88837 1.23116 0.97074 1.01469 0.81262 1.88105 1.36774 1.77765 1.27674 1.23503 0.82613 0.98649 1.00845 1.23634 0.99930 1.01926 0.80668 1.88177 1.34125 1.77030 1.30865 0.94380 0.80132 0.93049 0.94302 0.90674 0.90965 0.89342 0.93086 0.89673 0.92484 0.75287 0.85193 0.91209 0.91332 0.84617 0.91678 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 2 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.23 -11.85 9.93 84.03 0.83 -11.02 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.73 -34.86 4.95 -322.92 -1.60 -36.46 16 10 C 0.17 6.20 2.29 45.00 0.10 6.31 16 11 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 12 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 13 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 14 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 15 C -0.11 -2.93 5.49 30.59 0.17 -2.76 16 16 C 0.15 4.91 1.98 45.00 0.09 5.00 16 17 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 18 N -0.70 -22.05 4.87 -442.52 -2.16 -24.21 16 19 C 0.52 18.20 7.15 87.66 0.63 18.83 16 20 O -0.57 -24.52 16.17 15.92 0.26 -24.27 16 21 C 0.04 1.17 3.25 29.89 0.10 1.26 16 22 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 23 C 0.05 1.07 6.29 72.03 0.45 1.53 16 24 O -0.38 -8.51 10.85 -136.00 -1.48 -9.99 16 25 C 0.02 0.34 7.05 72.03 0.51 0.85 16 26 C 0.01 0.30 7.05 72.03 0.51 0.81 16 27 O -0.38 -11.86 10.03 -122.90 -1.23 -13.09 16 28 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.37 19.94 7.80 -92.71 -0.72 19.21 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.41 11.71 8.51 -92.71 -0.79 10.92 16 39 H 0.13 2.34 8.05 -2.39 -0.02 2.32 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.14 1.48 8.14 -2.38 -0.02 1.47 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.81 354.29 -0.02 -71.84 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.51 Total: 39.72 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.38 Total: 8.23 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -3.47 Total: -119.45 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.45 Total: -47.35 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.81 -0.02 -71.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085137167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.317 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds