Wall clock time and date at job start Fri Apr 10 2020 17:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48505 * 109.47281 * 239.99975 * 3 2 1 5 5 H 1.48503 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47527 * 119.99753 * 3 2 1 7 7 C 1.38807 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99816 * 197.36525 * 7 2 1 9 9 N 1.36938 * 120.00472 * 17.37207 * 7 2 1 10 10 C 1.46918 * 120.62993 * 207.68722 * 9 7 2 11 11 C 1.53194 * 108.77230 * 233.58169 * 10 9 7 12 12 C 1.53045 * 109.31322 * 305.36415 * 11 10 9 13 13 H 1.09002 * 109.44846 * 181.37878 * 12 11 10 14 14 N 1.46500 * 109.46055 * 301.34651 * 12 11 10 15 15 C 1.34774 * 119.99747 * 275.06713 * 14 12 11 16 16 O 1.21280 * 120.00306 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99790 * 180.02562 * 15 14 12 18 18 C 1.53173 * 109.54625 * 299.55538 * 17 15 14 19 19 C 1.53086 * 109.16570 * 183.15524 * 18 17 15 20 20 O 1.42897 * 109.41761 * 57.60534 * 19 18 17 21 21 C 1.42897 * 114.10144 * 298.84388 * 20 19 18 22 22 C 1.53100 * 109.41534 * 61.15569 * 21 20 19 23 23 C 1.53035 * 109.53367 * 61.36698 * 12 11 10 24 24 H 1.09001 * 109.50039 * 58.58596 * 23 12 11 25 25 O 1.42906 * 109.49694 * 178.65110 * 23 12 11 26 26 C 1.46925 * 120.62756 * 27.65558 * 9 7 2 27 27 H 0.97004 * 120.00023 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.58806 * 113.79987 * 10 9 7 29 29 H 1.08994 * 109.59050 * 353.36556 * 10 9 7 30 30 H 1.09005 * 109.49578 * 185.41715 * 11 10 9 31 31 H 1.09000 * 109.52425 * 65.33621 * 11 10 9 32 32 H 0.96993 * 119.99981 * 95.06612 * 14 12 11 33 33 H 1.09001 * 109.54079 * 59.82637 * 17 15 14 34 34 H 1.09009 * 109.52155 * 303.05816 * 18 17 15 35 35 H 1.08999 * 109.52495 * 63.24204 * 18 17 15 36 36 H 1.09003 * 109.47967 * 297.62506 * 19 18 17 37 37 H 1.09006 * 109.49238 * 177.60074 * 19 18 17 38 38 H 1.09001 * 109.48058 * 301.17785 * 21 20 19 39 39 H 1.08998 * 109.49650 * 181.14779 * 21 20 19 40 40 H 1.08994 * 109.52250 * 182.48859 * 22 21 20 41 41 H 1.09003 * 109.56830 * 62.32692 * 22 21 20 42 42 H 0.96698 * 114.00377 * 179.97438 * 25 23 12 43 43 H 1.09002 * 109.58628 * 6.63415 * 26 9 7 44 44 H 1.08993 * 109.58978 * 246.20323 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 1.8193 -3.6546 0.1818 11 6 2.0743 -4.6102 -0.9881 12 6 0.8185 -4.6902 -1.8593 13 1 0.9892 -5.3885 -2.6787 14 7 -0.3093 -5.1557 -1.0483 15 6 -0.5076 -6.4760 -0.8646 16 8 0.2473 -7.2789 -1.3711 17 6 -1.6680 -6.9549 -0.0308 18 6 -1.5351 -6.4088 1.3940 19 6 -2.6741 -6.9637 2.2533 20 8 -2.6333 -8.3919 2.2313 21 6 -2.8002 -8.9605 0.9310 22 6 -1.6662 -8.4859 0.0186 23 6 0.5007 -3.3052 -2.4274 24 1 1.3494 -2.9477 -3.0106 25 8 -0.6536 -3.3870 -3.2658 26 6 0.2278 -2.3348 -1.2738 27 1 -0.4850 0.8401 -0.0004 28 1 1.0468 -4.0685 0.8300 29 1 2.7400 -3.5172 0.7486 30 1 2.3134 -5.6014 -0.6027 31 1 2.9083 -4.2409 -1.5850 32 1 -0.9131 -4.5136 -0.6435 33 1 -2.6020 -6.6054 -0.4711 34 1 -0.5779 -6.7175 1.8146 35 1 -1.5910 -5.3204 1.3738 36 1 -3.6295 -6.6212 1.8556 37 1 -2.5604 -6.6124 3.2789 38 1 -3.7572 -8.6441 0.5160 39 1 -2.7773 -10.0479 1.0038 40 1 -1.8160 -8.8830 -0.9853 41 1 -0.7113 -8.8365 0.4104 42 1 -0.9136 -2.5435 -3.6607 43 1 0.0985 -1.3266 -1.6673 44 1 -0.6743 -2.6411 -0.7443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090013881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:45 Heat of formation + Delta-G solvation = -120.772177 kcal Electronic energy + Delta-G solvation = -25957.478109 eV Core-core repulsion = 22295.891632 eV Total energy + Delta-G solvation = -3661.586476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32374 -38.97409 -37.70004 -35.32891 -34.11330 -33.73317 -31.93693 -31.14181 -29.65922 -28.90575 -26.07811 -25.14852 -23.60657 -22.44285 -21.89473 -21.31815 -19.86299 -18.73546 -17.43960 -16.92773 -16.58352 -16.15521 -16.06175 -15.16022 -15.14555 -14.92902 -14.77408 -14.23748 -13.88708 -13.72794 -13.62726 -13.45444 -13.10752 -12.63358 -12.44439 -12.25532 -11.87330 -11.73243 -11.52994 -11.41855 -11.12578 -11.04885 -10.85133 -10.79677 -10.53680 -10.48502 -10.26249 -10.03842 -9.90079 -9.68105 -9.40512 -9.27596 -8.69155 -8.55326 -6.83227 -5.93712 -3.36738 2.91312 3.30013 3.36263 3.37628 3.47626 3.78316 4.36383 4.55487 4.56974 4.71029 4.76821 4.89192 5.09308 5.20819 5.22467 5.35007 5.36682 5.41045 5.53300 5.54341 5.57756 5.68632 5.73416 5.79927 5.89817 5.94085 6.00300 6.04028 6.19980 6.23033 6.41750 6.42534 6.67814 6.77000 6.94445 7.01143 7.06459 7.35520 7.66400 7.88531 8.05254 8.29780 8.54670 9.05010 9.67871 10.23440 11.14437 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020640 B = 0.004190 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.286457 B = 6680.728359 C = 7231.676014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.146 3.854 11 C -0.144 4.144 12 C 0.165 3.835 13 H 0.077 0.923 14 N -0.703 5.703 15 C 0.518 3.482 16 O -0.552 6.552 17 C -0.109 4.109 18 C -0.148 4.148 19 C 0.063 3.937 20 O -0.384 6.384 21 C 0.061 3.939 22 C -0.134 4.134 23 C 0.066 3.934 24 H 0.061 0.939 25 O -0.573 6.573 26 C 0.147 3.853 27 H 0.255 0.745 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.403 0.597 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.376 0.624 43 H 0.092 0.908 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -11.308 -0.474 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.185 4.185 12 C 0.060 3.940 13 H 0.095 0.905 14 N -0.354 5.354 15 C 0.304 3.696 16 O -0.431 6.431 17 C -0.130 4.130 18 C -0.186 4.186 19 C -0.013 4.013 20 O -0.303 6.303 21 C -0.016 4.016 22 C -0.172 4.172 23 C 0.005 3.995 24 H 0.079 0.921 25 O -0.378 6.378 26 C 0.020 3.980 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.240 0.760 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.222 0.778 43 H 0.110 0.890 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.264 -12.446 -0.492 13.523 hybrid contribution 0.115 2.126 -0.303 2.151 sum -5.149 -10.320 -0.794 11.561 Atomic orbital electron populations 1.70003 1.05259 1.25828 1.53635 1.25033 0.95310 0.98490 1.00600 0.86351 0.78949 0.83114 0.78254 1.20978 1.21579 1.20773 1.19171 0.92886 0.84692 1.41822 0.91454 1.43952 1.35663 1.01733 1.49790 1.20915 0.97881 0.86351 0.92867 1.22398 0.96531 1.00254 0.99267 1.20797 0.86020 0.94414 0.92777 0.90478 1.45999 1.30557 1.06743 1.52089 1.20409 0.85924 0.82535 0.80717 1.90651 1.47668 1.54310 1.50434 1.21355 0.98248 0.97386 0.96050 1.22199 1.00990 1.01649 0.93761 1.22582 0.97004 0.80832 1.00914 1.87927 1.93781 1.19998 1.28602 1.22620 0.96875 0.98642 0.83444 1.21996 1.00613 0.93554 1.01005 1.22947 0.87706 0.95883 0.92925 0.92097 1.86411 1.48294 1.36666 1.66413 1.21385 0.89438 0.98590 0.88565 0.93462 0.96196 0.92507 0.91778 0.91208 0.76031 0.88681 0.90302 0.89861 0.92932 0.88425 0.93203 0.88710 0.90322 0.90177 0.77759 0.88953 0.95845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 11.19 55.49 0.62 -23.79 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.64 29.59 -169.99 -5.03 15.61 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.62 9.58 -15.06 -0.14 -6.76 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -13.57 2.99 -172.33 -0.52 -14.09 16 10 C 0.15 2.92 6.26 -3.71 -0.02 2.90 16 11 C -0.14 -2.57 5.77 -26.61 -0.15 -2.72 16 12 C 0.16 2.93 2.47 -67.89 -0.17 2.76 16 13 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 14 N -0.70 -11.53 4.06 -53.77 -0.22 -11.75 16 15 C 0.52 8.32 7.12 -10.99 -0.08 8.25 16 16 O -0.55 -10.55 15.63 5.56 0.09 -10.46 16 17 C -0.11 -1.36 2.61 -91.59 -0.24 -1.60 16 18 C -0.15 -1.73 5.30 -26.60 -0.14 -1.87 16 19 C 0.06 0.66 6.84 37.20 0.25 0.91 16 20 O -0.38 -4.56 10.76 -35.23 -0.38 -4.94 16 21 C 0.06 0.61 6.84 37.21 0.25 0.86 16 22 C -0.13 -1.56 4.74 -26.59 -0.13 -1.69 16 23 C 0.07 1.20 3.36 -26.61 -0.09 1.12 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 O -0.57 -9.59 13.21 -35.23 -0.47 -10.05 16 26 C 0.15 3.15 4.64 -3.71 -0.02 3.13 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.02 0.40 7.74 -51.92 -0.40 0.00 16 29 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.40 6.55 6.38 -40.82 -0.26 6.29 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.06 8.02 -51.93 -0.42 0.65 16 42 H 0.38 5.01 9.08 45.56 0.41 5.42 16 43 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 44 H 0.02 0.52 6.64 -51.93 -0.34 0.18 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -30.17 343.92 -7.78 -37.95 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.30 Total: 11.02 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -0.76 Total: 5.31 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.11 Total: -49.62 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.76 Total: -25.45 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.17 -7.78 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090013881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.827 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds