Wall clock time and date at job start Fri Apr 10 2020 17:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48505 * 109.47281 * 239.99975 * 3 2 1 5 5 H 1.48503 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47527 * 119.99753 * 3 2 1 7 7 C 1.38807 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99816 * 197.36525 * 7 2 1 9 9 N 1.36938 * 120.00472 * 17.37207 * 7 2 1 10 10 C 1.46918 * 120.62993 * 207.68722 * 9 7 2 11 11 C 1.53194 * 108.77230 * 233.58169 * 10 9 7 12 12 C 1.53045 * 109.31322 * 305.36415 * 11 10 9 13 13 H 1.09002 * 109.44846 * 181.37878 * 12 11 10 14 14 N 1.46500 * 109.46055 * 301.34651 * 12 11 10 15 15 C 1.34774 * 119.99747 * 275.06713 * 14 12 11 16 16 O 1.21280 * 120.00306 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99790 * 180.02562 * 15 14 12 18 18 C 1.53173 * 109.54625 * 299.55538 * 17 15 14 19 19 C 1.53086 * 109.16570 * 183.15524 * 18 17 15 20 20 O 1.42897 * 109.41761 * 57.60534 * 19 18 17 21 21 C 1.42897 * 114.10144 * 298.84388 * 20 19 18 22 22 C 1.53100 * 109.41534 * 61.15569 * 21 20 19 23 23 C 1.53035 * 109.53367 * 61.36698 * 12 11 10 24 24 H 1.09001 * 109.50039 * 58.58596 * 23 12 11 25 25 O 1.42906 * 109.49694 * 178.65110 * 23 12 11 26 26 C 1.46925 * 120.62756 * 27.65558 * 9 7 2 27 27 H 0.97004 * 120.00023 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.58806 * 113.79987 * 10 9 7 29 29 H 1.08994 * 109.59050 * 353.36556 * 10 9 7 30 30 H 1.09005 * 109.49578 * 185.41715 * 11 10 9 31 31 H 1.09000 * 109.52425 * 65.33621 * 11 10 9 32 32 H 0.96993 * 119.99981 * 95.06612 * 14 12 11 33 33 H 1.09001 * 109.54079 * 59.82637 * 17 15 14 34 34 H 1.09009 * 109.52155 * 303.05816 * 18 17 15 35 35 H 1.08999 * 109.52495 * 63.24204 * 18 17 15 36 36 H 1.09003 * 109.47967 * 297.62506 * 19 18 17 37 37 H 1.09006 * 109.49238 * 177.60074 * 19 18 17 38 38 H 1.09001 * 109.48058 * 301.17785 * 21 20 19 39 39 H 1.08998 * 109.49650 * 181.14779 * 21 20 19 40 40 H 1.08994 * 109.52250 * 182.48859 * 22 21 20 41 41 H 1.09003 * 109.56830 * 62.32692 * 22 21 20 42 42 H 0.96698 * 114.00377 * 179.97438 * 25 23 12 43 43 H 1.09002 * 109.58628 * 6.63415 * 26 9 7 44 44 H 1.08993 * 109.58978 * 246.20323 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 1.8193 -3.6546 0.1818 11 6 2.0743 -4.6102 -0.9881 12 6 0.8185 -4.6902 -1.8593 13 1 0.9892 -5.3885 -2.6787 14 7 -0.3093 -5.1557 -1.0483 15 6 -0.5076 -6.4760 -0.8646 16 8 0.2473 -7.2789 -1.3711 17 6 -1.6680 -6.9549 -0.0308 18 6 -1.5351 -6.4088 1.3940 19 6 -2.6741 -6.9637 2.2533 20 8 -2.6333 -8.3919 2.2313 21 6 -2.8002 -8.9605 0.9310 22 6 -1.6662 -8.4859 0.0186 23 6 0.5007 -3.3052 -2.4274 24 1 1.3494 -2.9477 -3.0106 25 8 -0.6536 -3.3870 -3.2658 26 6 0.2278 -2.3348 -1.2738 27 1 -0.4850 0.8401 -0.0004 28 1 1.0468 -4.0685 0.8300 29 1 2.7400 -3.5172 0.7486 30 1 2.3134 -5.6014 -0.6027 31 1 2.9083 -4.2409 -1.5850 32 1 -0.9131 -4.5136 -0.6435 33 1 -2.6020 -6.6054 -0.4711 34 1 -0.5779 -6.7175 1.8146 35 1 -1.5910 -5.3204 1.3738 36 1 -3.6295 -6.6212 1.8556 37 1 -2.5604 -6.6124 3.2789 38 1 -3.7572 -8.6441 0.5160 39 1 -2.7773 -10.0479 1.0038 40 1 -1.8160 -8.8830 -0.9853 41 1 -0.7113 -8.8365 0.4104 42 1 -0.9136 -2.5435 -3.6607 43 1 0.0985 -1.3266 -1.6673 44 1 -0.6743 -2.6411 -0.7443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090013881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:45 Heat of formation + Delta-G solvation = -142.953224 kcal Electronic energy + Delta-G solvation = -25958.439951 eV Core-core repulsion = 22295.891632 eV Total energy + Delta-G solvation = -3662.548319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56211 -40.14337 -39.03597 -36.86865 -35.68672 -34.78797 -33.59419 -32.05196 -31.29818 -30.47682 -27.47365 -26.58516 -24.50877 -24.03840 -23.49893 -22.52563 -20.95621 -20.26793 -18.90449 -18.41692 -18.08705 -17.23089 -16.94429 -16.82119 -16.44496 -16.23332 -15.84569 -15.67611 -15.51518 -15.16091 -14.91953 -14.65015 -14.48041 -14.06535 -13.81832 -13.50863 -13.32940 -13.23000 -12.88200 -12.69366 -12.63536 -12.50528 -12.30406 -12.20581 -11.99234 -11.83577 -11.70070 -11.46015 -11.27806 -10.99906 -10.87041 -10.57818 -10.41058 -10.01336 -8.71350 -7.90295 -5.35357 1.48796 1.50895 1.56892 1.63906 2.21109 2.50000 2.98748 3.12429 3.26695 3.57960 3.65331 3.71544 3.76617 3.94406 4.02233 4.12565 4.24797 4.26449 4.30658 4.34793 4.44864 4.52381 4.61524 4.66598 4.71718 4.79554 4.82921 4.90371 4.93949 5.06554 5.08676 5.11149 5.15424 5.26482 5.30960 5.55053 5.58208 5.65258 6.26846 6.34431 6.56594 6.81417 7.12230 7.24376 7.79803 8.31384 9.15175 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020640 B = 0.004190 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.286457 B = 6680.728359 C = 7231.676014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.039 4.039 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.268 4.268 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.132 4.132 12 C 0.167 3.833 13 H 0.071 0.929 14 N -0.701 5.701 15 C 0.516 3.484 16 O -0.584 6.584 17 C -0.104 4.104 18 C -0.143 4.143 19 C 0.064 3.936 20 O -0.402 6.402 21 C 0.063 3.937 22 C -0.130 4.130 23 C 0.084 3.916 24 H 0.060 0.940 25 O -0.573 6.573 26 C 0.159 3.841 27 H 0.252 0.748 28 H 0.020 0.980 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.391 0.609 43 H 0.065 0.935 44 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 -11.744 -0.542 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.398 4.398 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.023 3.977 11 C -0.172 4.172 12 C 0.062 3.938 13 H 0.089 0.911 14 N -0.351 5.351 15 C 0.304 3.696 16 O -0.465 6.465 17 C -0.125 4.125 18 C -0.181 4.181 19 C -0.012 4.012 20 O -0.321 6.321 21 C -0.014 4.014 22 C -0.168 4.168 23 C 0.023 3.977 24 H 0.078 0.922 25 O -0.380 6.380 26 C 0.033 3.967 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.241 0.759 43 H 0.083 0.917 44 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -5.986 -12.890 -0.564 14.223 hybrid contribution 0.340 2.235 -0.288 2.279 sum -5.645 -10.655 -0.851 12.088 Atomic orbital electron populations 1.70124 1.06300 1.26056 1.54750 1.25656 0.95999 1.01023 1.00867 0.85430 0.77688 0.79619 0.78197 1.20590 1.21962 1.20505 1.19437 0.93078 0.85892 1.41420 0.91684 1.44136 1.35867 1.02067 1.50496 1.20952 0.97636 0.85527 0.93635 1.22246 0.96795 0.99720 0.98397 1.20687 0.86493 0.93862 0.92789 0.91077 1.45984 1.30178 1.07116 1.51853 1.21054 0.86385 0.81894 0.80312 1.90634 1.49070 1.54935 1.51819 1.21398 0.97318 0.97951 0.95811 1.22157 1.00976 1.01552 0.93442 1.22667 0.97030 0.80262 1.01281 1.87913 1.93857 1.20680 1.29612 1.22731 0.96745 0.99521 0.82376 1.21970 1.00477 0.92872 1.01486 1.22598 0.88120 0.95161 0.91856 0.92237 1.86388 1.47595 1.38022 1.65989 1.21192 0.88630 0.97836 0.89082 0.93905 0.96171 0.92696 0.91328 0.90858 0.75819 0.86598 0.91999 0.89980 0.91093 0.87495 0.91234 0.87187 0.90197 0.92319 0.75926 0.91657 0.96852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.35 11.19 21.65 0.24 -50.11 16 2 C -0.04 -2.03 4.91 84.86 0.42 -1.62 16 3 Si 0.96 42.33 29.59 68.60 2.03 44.36 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.27 -13.83 9.58 84.03 0.81 -13.03 16 8 H 0.07 3.32 7.89 -2.91 -0.02 3.29 16 9 N -0.60 -27.72 2.99 -699.11 -2.09 -29.82 16 10 C 0.15 5.86 6.26 86.36 0.54 6.40 16 11 C -0.13 -4.59 5.77 30.67 0.18 -4.41 16 12 C 0.17 5.80 2.47 45.02 0.11 5.91 16 13 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 14 N -0.70 -22.41 4.06 -442.41 -1.80 -24.21 16 15 C 0.52 16.15 7.12 87.66 0.62 16.78 16 16 O -0.58 -22.07 15.63 -3.03 -0.05 -22.12 16 17 C -0.10 -2.43 2.61 -11.42 -0.03 -2.46 16 18 C -0.14 -3.18 5.30 30.68 0.16 -3.01 16 19 C 0.06 1.19 6.84 72.01 0.49 1.69 16 20 O -0.40 -8.70 10.76 -148.98 -1.60 -10.30 16 21 C 0.06 1.10 6.84 72.02 0.49 1.59 16 22 C -0.13 -2.87 4.74 30.69 0.15 -2.72 16 23 C 0.08 2.98 3.36 30.67 0.10 3.08 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 O -0.57 -18.38 13.21 -148.98 -1.97 -20.35 16 26 C 0.16 6.80 4.64 86.36 0.40 7.20 16 27 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 28 H 0.02 0.80 7.74 -2.38 -0.02 0.79 16 29 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 30 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 32 H 0.41 12.82 6.38 -92.71 -0.59 12.22 16 33 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 1.83 7.70 -2.39 -0.02 1.82 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.54 8.02 -2.39 -0.02 1.52 16 42 H 0.39 9.87 9.08 -74.06 -0.67 9.20 16 43 H 0.07 3.17 6.04 -2.39 -0.01 3.15 16 44 H 0.01 0.60 6.64 -2.39 -0.02 0.59 16 Total: -1.00 -63.35 343.92 -1.05 -64.40 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.25 Total: 32.74 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 4.44 Total: 15.40 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.65 Total: -104.14 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -3.62 Total: -52.77 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -63.35 -1.05 -64.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090013881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.550 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds