Wall clock time and date at job start Fri Apr 10 2020 17:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48493 * 109.47322 * 274.06817 * 3 2 1 5 5 H 1.48494 * 109.47138 * 34.06931 * 3 2 1 6 6 H 1.48500 * 109.47014 * 154.07037 * 3 2 1 7 7 C 1.38821 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00317 * 197.50386 * 7 2 1 9 9 N 1.36936 * 119.99744 * 17.49659 * 7 2 1 10 10 C 1.46928 * 120.63109 * 27.99014 * 9 7 2 11 11 C 1.53189 * 108.77718 * 126.36315 * 10 9 7 12 12 C 1.53042 * 109.31407 * 54.63577 * 11 10 9 13 13 H 1.09008 * 109.45940 * 58.65327 * 12 11 10 14 14 N 1.46495 * 109.45195 * 178.62060 * 12 11 10 15 15 C 1.34777 * 120.00166 * 275.03187 * 14 12 11 16 16 O 1.21281 * 119.99809 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00059 * 179.97438 * 15 14 12 18 18 C 1.53003 * 109.47142 * 179.97438 * 17 15 14 19 19 O 1.42903 * 112.84486 * 53.80515 * 18 17 15 20 20 C 1.53782 * 113.61804 * 282.50066 * 18 17 15 21 21 C 1.53775 * 87.08123 * 220.01767 * 20 18 17 22 22 C 1.53776 * 87.08235 * 25.43063 * 21 20 18 23 23 C 1.53046 * 109.53844 * 298.63638 * 12 11 10 24 24 H 1.08999 * 109.49283 * 301.41545 * 23 12 11 25 25 O 1.42894 * 109.49951 * 181.34890 * 23 12 11 26 26 C 1.46927 * 120.63160 * 207.96039 * 9 7 2 27 27 H 0.97004 * 119.99480 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58318 * 246.15026 * 10 9 7 29 29 H 1.08998 * 109.58651 * 6.57537 * 10 9 7 30 30 H 1.08996 * 109.50005 * 294.68348 * 11 10 9 31 31 H 1.09000 * 109.49950 * 174.58132 * 11 10 9 32 32 H 0.97005 * 120.00000 * 95.03436 * 14 12 11 33 33 H 1.08995 * 109.47240 * 299.99972 * 17 15 14 34 34 H 1.08998 * 109.47258 * 60.00877 * 17 15 14 35 35 H 0.96700 * 114.00671 * 309.66079 * 19 18 17 36 36 H 1.09000 * 113.61030 * 334.56609 * 20 18 17 37 37 H 1.08997 * 113.61184 * 105.46811 * 20 18 17 38 38 H 1.09007 * 113.61288 * 270.88474 * 21 20 18 39 39 H 1.08997 * 113.61651 * 139.98602 * 21 20 18 40 40 H 1.09002 * 113.61263 * 220.02059 * 22 21 20 41 41 H 1.08999 * 113.61349 * 89.11516 * 22 21 20 42 42 H 0.96701 * 114.00283 * 179.97438 * 25 23 12 43 43 H 1.09000 * 109.58436 * 113.84563 * 26 9 7 44 44 H 1.09003 * 109.70261 * 353.49516 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4119 2.0960 -1.3965 5 1 1.4936 2.6262 0.7843 6 1 3.5882 1.4166 0.6122 7 6 2.0102 -1.2023 -0.0005 8 1 3.0526 -1.2242 0.2807 9 7 1.3729 -2.3605 -0.3576 10 6 0.2346 -2.3330 -1.2862 11 6 0.5142 -3.3036 -2.4379 12 6 0.8268 -4.6890 -1.8677 13 1 -0.0168 -5.0345 -1.2699 14 7 1.0624 -5.6275 -2.9676 15 6 0.0219 -6.2471 -3.5594 16 8 -1.1093 -6.0280 -3.1809 17 6 0.2642 -7.2120 -4.6912 18 6 -1.0735 -7.7715 -5.1797 19 8 -2.0107 -6.7486 -5.5224 20 6 -1.6559 -8.8621 -4.2652 21 6 -2.0754 -9.6019 -5.5464 22 6 -0.9297 -8.8608 -6.2555 23 6 2.0767 -4.6104 -0.9880 24 1 2.9149 -4.2414 -1.5792 25 8 2.3860 -5.9102 -0.4814 26 6 1.8148 -3.6545 0.1801 27 1 -0.4849 0.8401 0.0004 28 1 -0.6714 -2.6384 -0.7627 29 1 0.1091 -1.3246 -1.6805 30 1 1.3671 -2.9470 -3.0153 31 1 -0.3623 -3.3651 -3.0829 32 1 1.9672 -5.8030 -3.2701 33 1 0.7624 -6.6935 -5.5104 34 1 0.8941 -8.0303 -4.3425 35 1 -2.1230 -6.0731 -4.8396 36 1 -0.9022 -9.3914 -3.6823 37 1 -2.4976 -8.5222 -3.6618 38 1 -3.0654 -9.3228 -5.9075 39 1 -1.9314 -10.6810 -5.4945 40 1 -1.1851 -8.5200 -7.2589 41 1 0.0225 -9.3898 -6.2166 42 1 3.1690 -5.9354 0.0855 43 1 1.0377 -4.0675 0.8231 44 1 2.7313 -3.5200 0.7547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099824028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:05 Heat of formation + Delta-G solvation = -97.271061 kcal Electronic energy + Delta-G solvation = -25307.410886 eV Core-core repulsion = 21646.843495 eV Total energy + Delta-G solvation = -3660.567391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48963 -39.07686 -37.76343 -35.45888 -34.64164 -34.17849 -32.12315 -30.80207 -29.59539 -28.45864 -25.85524 -25.24763 -23.55665 -22.41853 -21.80675 -20.32547 -19.69375 -19.49126 -17.35991 -16.85241 -16.78073 -16.42265 -15.93045 -15.42131 -15.11986 -14.85108 -14.82547 -14.14357 -13.93650 -13.66240 -13.34811 -13.00480 -12.96652 -12.71492 -12.42633 -12.28772 -12.05825 -11.62689 -11.62583 -11.30314 -11.14898 -10.97350 -10.91705 -10.73089 -10.52659 -10.37739 -10.29049 -9.99035 -9.84436 -9.74406 -9.69631 -9.41319 -8.82568 -8.50000 -6.81599 -5.88641 -3.33131 2.70506 3.27207 3.32907 3.39211 3.40914 4.03980 4.31557 4.42638 4.46477 4.53453 4.57423 4.72359 5.07987 5.17950 5.24865 5.28757 5.32233 5.43895 5.48641 5.50317 5.54086 5.61163 5.72093 5.76713 5.91401 6.00122 6.05337 6.13768 6.21483 6.28016 6.43127 6.46919 6.61149 6.72103 6.78911 7.23979 7.55383 7.63677 7.69556 7.80093 7.85947 8.33668 8.36668 9.09226 9.71528 10.27355 11.19940 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.003341 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.511329 B = 8379.652570 C = 8920.655348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.161 3.839 13 H 0.088 0.912 14 N -0.713 5.713 15 C 0.515 3.485 16 O -0.546 6.546 17 C -0.164 4.164 18 C 0.130 3.870 19 O -0.550 6.550 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.129 4.129 23 C 0.080 3.920 24 H 0.056 0.944 25 O -0.572 6.572 26 C 0.121 3.879 27 H 0.256 0.744 28 H 0.024 0.976 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.397 0.603 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.392 0.608 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.374 0.626 43 H 0.029 0.971 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -16.431 -9.518 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.057 3.943 13 H 0.106 0.894 14 N -0.361 5.361 15 C 0.302 3.698 16 O -0.426 6.426 17 C -0.205 4.205 18 C 0.088 3.912 19 O -0.363 6.363 20 C -0.199 4.199 21 C -0.173 4.173 22 C -0.166 4.166 23 C 0.019 3.981 24 H 0.074 0.926 25 O -0.376 6.376 26 C -0.007 4.007 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.220 0.780 43 H 0.047 0.953 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.739 -16.601 -10.079 19.499 hybrid contribution 1.531 1.321 0.778 2.166 sum 3.269 -15.280 -9.302 18.185 Atomic orbital electron populations 1.70043 1.05307 1.25789 1.52990 1.25085 0.95303 0.98580 1.00394 0.86243 0.79118 0.83510 0.77680 1.21343 1.21661 1.20357 1.19172 0.92764 0.84681 1.42458 0.91505 1.44042 1.36403 1.01051 1.49694 1.20825 0.88793 0.98360 0.87495 1.22600 1.01021 0.94262 1.00768 1.21036 0.97596 0.89350 0.86293 0.89376 1.46137 1.09244 1.44562 1.36173 1.20558 0.85232 0.80836 0.83165 1.90551 1.22417 1.64888 1.64737 1.22357 1.00461 0.99831 0.97807 1.21748 0.86768 0.87253 0.95428 1.86304 1.62282 1.39240 1.48501 1.23568 1.01801 0.97590 0.96964 1.22742 0.98901 0.98857 0.96757 1.23059 0.99460 0.95473 0.98614 1.22779 0.96026 0.83098 0.96225 0.92623 1.86471 1.51094 1.30284 1.69770 1.21518 0.98818 0.87429 0.92916 0.93397 0.95777 0.88913 0.92369 0.91902 0.76966 0.88286 0.87994 0.75232 0.89908 0.90521 0.89869 0.91544 0.90578 0.89025 0.77952 0.95342 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.22 55.49 0.62 -24.97 16 2 C 0.01 0.16 4.90 -17.43 -0.09 0.07 16 3 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.17 2.99 -172.32 -0.52 -14.68 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.64 16 13 H 0.09 1.77 7.58 -51.92 -0.39 1.38 16 14 N -0.71 -9.90 4.92 -53.76 -0.26 -10.16 16 15 C 0.52 7.27 7.55 -10.99 -0.08 7.19 16 16 O -0.55 -9.51 13.25 -14.26 -0.19 -9.70 16 17 C -0.16 -1.70 5.34 -27.88 -0.15 -1.85 16 18 C 0.13 1.51 1.10 -89.81 -0.10 1.41 16 19 O -0.55 -7.92 13.39 -55.05 -0.74 -8.66 16 20 C -0.16 -1.81 7.17 -25.92 -0.19 -1.99 16 21 C -0.14 -1.29 8.02 -25.92 -0.21 -1.50 16 22 C -0.13 -1.19 7.47 -25.92 -0.19 -1.38 16 23 C 0.08 1.31 3.14 -26.61 -0.08 1.22 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 O -0.57 -8.18 13.16 -35.23 -0.46 -8.65 16 26 C 0.12 2.41 6.14 -3.71 -0.02 2.38 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 4.49 8.60 -40.82 -0.35 4.13 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.39 5.93 6.19 45.56 0.28 6.21 16 36 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.37 3.80 9.09 45.56 0.41 4.21 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -31.27 350.60 -8.67 -39.94 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.81 Total: 13.31 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.57 Total: 2.22 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.16 Total: -49.81 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.39 Total: -27.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.27 -8.67 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099824028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.329 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds