Wall clock time and date at job start Fri Apr 10 2020 17:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48493 * 109.47322 * 274.06817 * 3 2 1 5 5 H 1.48494 * 109.47138 * 34.06931 * 3 2 1 6 6 H 1.48500 * 109.47014 * 154.07037 * 3 2 1 7 7 C 1.38821 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00317 * 197.50386 * 7 2 1 9 9 N 1.36936 * 119.99744 * 17.49659 * 7 2 1 10 10 C 1.46928 * 120.63109 * 27.99014 * 9 7 2 11 11 C 1.53189 * 108.77718 * 126.36315 * 10 9 7 12 12 C 1.53042 * 109.31407 * 54.63577 * 11 10 9 13 13 H 1.09008 * 109.45940 * 58.65327 * 12 11 10 14 14 N 1.46495 * 109.45195 * 178.62060 * 12 11 10 15 15 C 1.34777 * 120.00166 * 275.03187 * 14 12 11 16 16 O 1.21281 * 119.99809 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00059 * 179.97438 * 15 14 12 18 18 C 1.53003 * 109.47142 * 179.97438 * 17 15 14 19 19 O 1.42903 * 112.84486 * 53.80515 * 18 17 15 20 20 C 1.53782 * 113.61804 * 282.50066 * 18 17 15 21 21 C 1.53775 * 87.08123 * 220.01767 * 20 18 17 22 22 C 1.53776 * 87.08235 * 25.43063 * 21 20 18 23 23 C 1.53046 * 109.53844 * 298.63638 * 12 11 10 24 24 H 1.08999 * 109.49283 * 301.41545 * 23 12 11 25 25 O 1.42894 * 109.49951 * 181.34890 * 23 12 11 26 26 C 1.46927 * 120.63160 * 207.96039 * 9 7 2 27 27 H 0.97004 * 119.99480 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58318 * 246.15026 * 10 9 7 29 29 H 1.08998 * 109.58651 * 6.57537 * 10 9 7 30 30 H 1.08996 * 109.50005 * 294.68348 * 11 10 9 31 31 H 1.09000 * 109.49950 * 174.58132 * 11 10 9 32 32 H 0.97005 * 120.00000 * 95.03436 * 14 12 11 33 33 H 1.08995 * 109.47240 * 299.99972 * 17 15 14 34 34 H 1.08998 * 109.47258 * 60.00877 * 17 15 14 35 35 H 0.96700 * 114.00671 * 309.66079 * 19 18 17 36 36 H 1.09000 * 113.61030 * 334.56609 * 20 18 17 37 37 H 1.08997 * 113.61184 * 105.46811 * 20 18 17 38 38 H 1.09007 * 113.61288 * 270.88474 * 21 20 18 39 39 H 1.08997 * 113.61651 * 139.98602 * 21 20 18 40 40 H 1.09002 * 113.61263 * 220.02059 * 22 21 20 41 41 H 1.08999 * 113.61349 * 89.11516 * 22 21 20 42 42 H 0.96701 * 114.00283 * 179.97438 * 25 23 12 43 43 H 1.09000 * 109.58436 * 113.84563 * 26 9 7 44 44 H 1.09003 * 109.70261 * 353.49516 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4119 2.0960 -1.3965 5 1 1.4936 2.6262 0.7843 6 1 3.5882 1.4166 0.6122 7 6 2.0102 -1.2023 -0.0005 8 1 3.0526 -1.2242 0.2807 9 7 1.3729 -2.3605 -0.3576 10 6 0.2346 -2.3330 -1.2862 11 6 0.5142 -3.3036 -2.4379 12 6 0.8268 -4.6890 -1.8677 13 1 -0.0168 -5.0345 -1.2699 14 7 1.0624 -5.6275 -2.9676 15 6 0.0219 -6.2471 -3.5594 16 8 -1.1093 -6.0280 -3.1809 17 6 0.2642 -7.2120 -4.6912 18 6 -1.0735 -7.7715 -5.1797 19 8 -2.0107 -6.7486 -5.5224 20 6 -1.6559 -8.8621 -4.2652 21 6 -2.0754 -9.6019 -5.5464 22 6 -0.9297 -8.8608 -6.2555 23 6 2.0767 -4.6104 -0.9880 24 1 2.9149 -4.2414 -1.5792 25 8 2.3860 -5.9102 -0.4814 26 6 1.8148 -3.6545 0.1801 27 1 -0.4849 0.8401 0.0004 28 1 -0.6714 -2.6384 -0.7627 29 1 0.1091 -1.3246 -1.6805 30 1 1.3671 -2.9470 -3.0153 31 1 -0.3623 -3.3651 -3.0829 32 1 1.9672 -5.8030 -3.2701 33 1 0.7624 -6.6935 -5.5104 34 1 0.8941 -8.0303 -4.3425 35 1 -2.1230 -6.0731 -4.8396 36 1 -0.9022 -9.3914 -3.6823 37 1 -2.4976 -8.5222 -3.6618 38 1 -3.0654 -9.3228 -5.9075 39 1 -1.9314 -10.6810 -5.4945 40 1 -1.1851 -8.5200 -7.2589 41 1 0.0225 -9.3898 -6.2166 42 1 3.1690 -5.9354 0.0855 43 1 1.0377 -4.0675 0.8231 44 1 2.7313 -3.5200 0.7547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099824028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:04 Heat of formation + Delta-G solvation = -121.943228 kcal Electronic energy + Delta-G solvation = -25308.480751 eV Core-core repulsion = 21646.843495 eV Total energy + Delta-G solvation = -3661.637257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54851 -40.25932 -39.04011 -36.98470 -35.85814 -35.32330 -33.84720 -32.21256 -30.95976 -29.97050 -27.02931 -26.61854 -24.70159 -23.93298 -23.35548 -21.54947 -21.04945 -20.53683 -18.97381 -18.04713 -18.02643 -17.71531 -17.08101 -16.73370 -16.49751 -16.01755 -15.86361 -15.68813 -15.45250 -15.01323 -14.87475 -14.47060 -13.99942 -13.95636 -13.77393 -13.44661 -13.28688 -13.17960 -12.97887 -12.74678 -12.49293 -12.38997 -12.15417 -12.09542 -12.04780 -11.90206 -11.75501 -11.44476 -11.34976 -11.08807 -10.66702 -10.59284 -10.57128 -10.03660 -8.78418 -7.91948 -5.39664 1.47729 1.49165 1.58398 1.61338 2.15186 2.48053 3.11335 3.17207 3.25225 3.56181 3.61928 3.66602 3.75078 3.86531 3.94256 4.05282 4.20985 4.22077 4.38002 4.42900 4.51987 4.55789 4.69763 4.74056 4.81332 4.83344 4.86544 4.94504 5.01365 5.06450 5.10750 5.15594 5.33537 5.35940 5.43874 5.50632 5.58708 5.64249 6.32225 6.56168 6.72788 6.87402 7.08056 7.29700 7.76406 8.28975 9.15327 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.003341 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.511329 B = 8379.652570 C = 8920.655348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.266 4.266 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.128 4.128 12 C 0.170 3.830 13 H 0.054 0.946 14 N -0.701 5.701 15 C 0.509 3.491 16 O -0.585 6.585 17 C -0.152 4.152 18 C 0.110 3.890 19 O -0.570 6.570 20 C -0.167 4.167 21 C -0.133 4.133 22 C -0.115 4.115 23 C 0.103 3.897 24 H 0.074 0.926 25 O -0.570 6.570 26 C 0.117 3.883 27 H 0.251 0.749 28 H -0.010 1.010 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.415 0.585 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.384 0.616 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.396 0.604 43 H 0.010 0.990 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -18.407 -10.828 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.396 4.396 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.169 4.169 12 C 0.064 3.936 13 H 0.072 0.928 14 N -0.351 5.351 15 C 0.298 3.702 16 O -0.467 6.467 17 C -0.191 4.191 18 C 0.068 3.932 19 O -0.382 6.382 20 C -0.205 4.205 21 C -0.171 4.171 22 C -0.153 4.153 23 C 0.042 3.958 24 H 0.092 0.908 25 O -0.377 6.377 26 C -0.010 4.010 27 H 0.060 0.940 28 H 0.008 0.992 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.252 0.748 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.239 0.761 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.143 0.857 42 H 0.246 0.754 43 H 0.028 0.972 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.923 -18.635 -11.398 22.392 hybrid contribution 0.523 1.847 1.263 2.297 sum 5.445 -16.788 -10.136 20.353 Atomic orbital electron populations 1.70215 1.06962 1.26056 1.54957 1.25898 0.95982 1.01883 1.00878 0.85197 0.78277 0.79210 0.77414 1.21190 1.22557 1.18723 1.19581 0.93282 0.85566 1.41155 0.90511 1.44257 1.36185 1.02150 1.50243 1.20538 0.87841 0.97693 0.88580 1.22309 1.01233 0.94525 0.98795 1.20603 0.97093 0.88681 0.87199 0.92751 1.45897 1.10370 1.43723 1.35145 1.21343 0.84446 0.80855 0.83562 1.90555 1.24145 1.66066 1.65933 1.22380 1.00343 0.99827 0.96590 1.22166 0.86895 0.87128 0.97000 1.86288 1.63606 1.39789 1.48482 1.23624 1.01326 0.98174 0.97354 1.22727 0.98532 1.00145 0.95667 1.23110 1.00690 0.94014 0.97442 1.22289 0.95875 0.83159 0.94509 0.90805 1.86443 1.52642 1.28352 1.70297 1.21699 0.98601 0.86314 0.94399 0.94037 0.99204 0.92085 0.91230 0.92327 0.74850 0.86091 0.84636 0.76145 0.88285 0.93559 0.91432 0.89324 0.90893 0.85720 0.75384 0.97243 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.44 11.22 21.65 0.24 -55.19 16 2 C -0.05 -2.78 4.90 84.86 0.42 -2.36 16 3 Si 0.97 43.70 29.59 68.60 2.03 45.73 16 4 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.27 -14.04 9.58 84.04 0.81 -13.24 16 8 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16 9 N -0.60 -29.43 2.99 -699.09 -2.09 -31.53 16 10 C 0.18 8.84 5.31 86.36 0.46 9.29 16 11 C -0.13 -4.94 5.65 30.67 0.17 -4.77 16 12 C 0.17 5.75 2.12 45.02 0.10 5.84 16 13 H 0.05 2.24 7.58 -2.38 -0.02 2.22 16 14 N -0.70 -17.89 4.92 -442.40 -2.18 -20.07 16 15 C 0.51 13.60 7.55 87.66 0.66 14.26 16 16 O -0.59 -20.73 13.25 15.92 0.21 -20.52 16 17 C -0.15 -2.64 5.34 29.85 0.16 -2.48 16 18 C 0.11 2.35 1.10 -10.27 -0.01 2.33 16 19 O -0.57 -16.49 13.39 -130.03 -1.74 -18.23 16 20 C -0.17 -3.54 7.17 31.12 0.22 -3.32 16 21 C -0.13 -2.30 8.02 31.12 0.25 -2.05 16 22 C -0.12 -1.76 7.47 31.12 0.23 -1.53 16 23 C 0.10 3.15 3.14 30.67 0.10 3.25 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 O -0.57 -14.47 13.16 -148.98 -1.96 -16.43 16 26 C 0.12 4.56 6.14 86.36 0.53 5.09 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H -0.01 -0.56 8.14 -2.38 -0.02 -0.57 16 29 H 0.06 3.37 6.06 -2.39 -0.01 3.35 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.41 7.74 8.60 -92.70 -0.80 6.94 16 33 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.14 1.50 8.05 -2.39 -0.02 1.48 16 35 H 0.38 12.15 6.19 -74.06 -0.46 11.69 16 36 H 0.10 1.73 8.03 -2.39 -0.02 1.71 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.40 6.47 9.09 -74.06 -0.67 5.79 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 Total: -1.00 -71.44 350.60 -2.30 -73.74 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.91 Total: 32.17 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 4.09 Total: 10.33 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.02 Total: -106.79 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -3.49 Total: -55.18 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.44 -2.30 -73.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099824028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.206 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds