Wall clock time and date at job start Fri Apr 10 2020 17:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47030 * 239.99557 * 3 2 1 5 5 H 1.48504 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47208 * 119.99771 * 3 2 1 7 7 C 1.38807 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 197.35598 * 7 2 1 9 9 N 1.36942 * 120.00168 * 17.36349 * 7 2 1 10 10 C 1.46924 * 120.62727 * 207.69005 * 9 7 2 11 11 C 1.53190 * 108.77568 * 233.58288 * 10 9 7 12 12 C 1.53043 * 109.31617 * 305.37134 * 11 10 9 13 13 H 1.08998 * 109.44783 * 181.37670 * 12 11 10 14 14 N 1.46499 * 109.45787 * 301.34474 * 12 11 10 15 15 C 1.34779 * 119.99928 * 275.06340 * 14 12 11 16 16 O 1.21284 * 120.00081 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99981 * 179.97438 * 15 14 12 18 18 C 1.53007 * 109.47311 * 180.02562 * 17 15 14 19 19 O 1.42898 * 112.84696 * 55.33244 * 18 17 15 20 20 C 1.53779 * 113.61322 * 284.14248 * 18 17 15 21 21 C 1.53961 * 87.01909 * 220.04655 * 20 18 17 22 22 C 1.53780 * 113.61606 * 186.53136 * 18 17 15 23 23 C 1.53044 * 109.53547 * 61.36245 * 12 11 10 24 24 H 1.08994 * 109.49433 * 58.58947 * 23 12 11 25 25 O 1.42903 * 109.49508 * 178.68710 * 23 12 11 26 26 C 1.46922 * 120.62766 * 27.66996 * 9 7 2 27 27 H 0.96998 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.59020 * 353.37795 * 10 9 7 29 29 H 1.09004 * 109.58086 * 113.66013 * 10 9 7 30 30 H 1.09004 * 109.50093 * 185.42055 * 11 10 9 31 31 H 1.09005 * 109.49862 * 65.32163 * 11 10 9 32 32 H 0.96999 * 120.00292 * 95.06747 * 14 12 11 33 33 H 1.08996 * 109.47410 * 300.00284 * 17 15 14 34 34 H 1.09004 * 109.47117 * 60.00260 * 17 15 14 35 35 H 0.96703 * 114.00484 * 309.67537 * 19 18 17 36 36 H 1.09007 * 113.61515 * 334.56100 * 20 18 17 37 37 H 1.08994 * 113.61727 * 105.46520 * 20 18 17 38 38 H 1.09000 * 113.53044 * 270.81389 * 21 20 18 39 39 H 1.08991 * 113.66749 * 139.93372 * 21 20 18 40 40 H 1.08995 * 113.61342 * 254.52926 * 22 18 17 41 41 H 1.08995 * 113.61270 * 25.35024 * 22 18 17 42 42 H 0.96691 * 114.00204 * 180.02562 * 25 23 12 43 43 H 1.09000 * 109.59248 * 6.63144 * 26 9 7 44 44 H 1.08995 * 109.58790 * 246.19691 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2796 9 7 1.3723 -2.3612 -0.3529 10 6 1.8192 -3.6546 0.1820 11 6 2.0741 -4.6104 -0.9877 12 6 0.8184 -4.6905 -1.8589 13 1 0.9890 -5.3888 -2.6782 14 7 -0.3094 -5.1557 -1.0478 15 6 -0.5079 -6.4761 -0.8640 16 8 0.2474 -7.2791 -1.3697 17 6 -1.6677 -6.9547 -0.0293 18 6 -1.6642 -8.4840 0.0196 19 8 -0.4265 -9.0212 0.4902 20 6 -2.1692 -9.1428 -1.2749 21 6 -2.8942 -10.1627 -0.3780 22 6 -2.8990 -9.0809 0.7151 23 6 0.5006 -3.3055 -2.4272 24 1 1.3492 -2.9481 -3.0104 25 8 -0.6542 -3.3872 -3.2650 26 6 0.2278 -2.3349 -1.2737 27 1 -0.4850 0.8400 -0.0004 28 1 2.7398 -3.5171 0.7490 29 1 1.0477 -4.0672 0.8323 30 1 2.3132 -5.6016 -0.6022 31 1 2.9079 -4.2407 -1.5845 32 1 -0.9134 -4.5136 -0.6431 33 1 -1.5751 -6.5590 0.9821 34 1 -2.6014 -6.6071 -0.4714 35 1 0.3526 -8.6667 0.0403 36 1 -2.8446 -8.5109 -1.8518 37 1 -1.3755 -9.5795 -1.8810 38 1 -2.2863 -11.0325 -0.1287 39 1 -3.8895 -10.4285 -0.7337 40 1 -2.6936 -9.4678 1.7131 41 1 -3.7739 -8.4315 0.6846 42 1 -0.9137 -2.5439 -3.6605 43 1 0.0985 -1.3267 -1.6675 44 1 -0.6744 -2.6411 -0.7443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099824029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:08 Heat of formation + Delta-G solvation = -96.212279 kcal Electronic energy + Delta-G solvation = -25722.101194 eV Core-core repulsion = 22061.579715 eV Total energy + Delta-G solvation = -3660.521479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44585 -39.13698 -37.63356 -35.34861 -34.49997 -34.03619 -32.16721 -30.60928 -29.31726 -28.75228 -25.79177 -25.40495 -23.61188 -22.37709 -21.83911 -20.63486 -19.64772 -18.78084 -17.25579 -16.93409 -16.61136 -16.41331 -15.67673 -15.30860 -15.08625 -14.83132 -14.77478 -14.09592 -13.90582 -13.79833 -13.53171 -12.95991 -12.89754 -12.59204 -12.37806 -12.21674 -11.89036 -11.74611 -11.53964 -11.24067 -11.14052 -11.07098 -10.91729 -10.85924 -10.50582 -10.45596 -10.27995 -10.05282 -9.73948 -9.63882 -9.49828 -9.37603 -8.74852 -8.59087 -6.84501 -5.94572 -3.37811 2.80684 3.29473 3.35759 3.37004 3.42266 4.10131 4.35357 4.49702 4.53642 4.61778 4.67904 4.78689 5.17180 5.20910 5.28574 5.34944 5.39750 5.45909 5.58105 5.64641 5.64998 5.67022 5.77173 5.83136 5.87446 5.97728 6.04641 6.17832 6.20976 6.29589 6.37796 6.38799 6.65788 6.74138 6.87907 6.99350 7.34182 7.65516 7.77901 7.84501 8.03160 8.28718 8.45739 9.03976 9.66777 10.22158 11.13600 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.003582 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.339212 B = 7814.699721 C = 7904.802819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.144 4.144 12 C 0.164 3.836 13 H 0.079 0.921 14 N -0.701 5.701 15 C 0.517 3.483 16 O -0.558 6.558 17 C -0.166 4.166 18 C 0.132 3.868 19 O -0.550 6.550 20 C -0.160 4.160 21 C -0.135 4.135 22 C -0.129 4.129 23 C 0.066 3.934 24 H 0.061 0.939 25 O -0.573 6.573 26 C 0.146 3.854 27 H 0.256 0.744 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.390 0.610 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.376 0.624 43 H 0.093 0.907 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -12.369 -2.333 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.184 4.184 12 C 0.059 3.941 13 H 0.097 0.903 14 N -0.351 5.351 15 C 0.304 3.696 16 O -0.439 6.439 17 C -0.206 4.206 18 C 0.090 3.910 19 O -0.362 6.362 20 C -0.198 4.198 21 C -0.173 4.173 22 C -0.166 4.166 23 C 0.005 3.995 24 H 0.079 0.921 25 O -0.378 6.378 26 C 0.019 3.981 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.242 0.758 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.223 0.777 43 H 0.111 0.889 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.316 -13.704 -2.124 14.852 hybrid contribution 0.462 2.313 -0.338 2.383 sum -4.855 -11.391 -2.462 12.625 Atomic orbital electron populations 1.70000 1.05264 1.25860 1.53576 1.25046 0.95326 0.98532 1.00577 0.86340 0.78941 0.83069 0.78259 1.20962 1.21573 1.20762 1.19174 0.92895 0.84678 1.41898 0.91421 1.43958 1.35673 1.01753 1.49793 1.20919 0.97939 0.86389 0.92858 1.22397 0.96495 1.00283 0.99236 1.20828 0.85953 0.94512 0.92779 0.90327 1.46041 1.30498 1.06753 1.51791 1.20527 0.85936 0.82633 0.80488 1.90524 1.48326 1.53991 1.51029 1.22351 0.98675 0.97757 1.01798 1.21746 0.85833 0.88691 0.94764 1.86302 1.15690 1.69134 1.65029 1.23584 1.00480 0.98613 0.97092 1.22777 1.00406 0.97254 0.96845 1.23057 0.96001 0.98199 0.99359 1.22944 0.87733 0.95840 0.92947 0.92059 1.86403 1.48234 1.36743 1.66425 1.21394 0.89456 0.98640 0.88570 0.93440 0.92467 0.96227 0.91691 0.91142 0.75835 0.88108 0.87919 0.75545 0.89909 0.90633 0.89968 0.91564 0.90586 0.88925 0.77706 0.88920 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 11.19 55.49 0.62 -23.81 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.64 9.59 -15.06 -0.14 -6.78 16 8 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -13.55 2.99 -172.33 -0.52 -14.06 16 10 C 0.15 2.88 6.25 -3.71 -0.02 2.85 16 11 C -0.14 -2.48 5.77 -26.61 -0.15 -2.64 16 12 C 0.16 2.81 2.47 -67.89 -0.17 2.64 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 14 N -0.70 -11.03 4.16 -53.76 -0.22 -11.26 16 15 C 0.52 7.76 7.53 -10.99 -0.08 7.68 16 16 O -0.56 -9.51 13.29 -13.60 -0.18 -9.69 16 17 C -0.17 -1.98 5.33 -27.88 -0.15 -2.12 16 18 C 0.13 1.62 1.09 -89.81 -0.10 1.52 16 19 O -0.55 -8.01 13.40 -54.39 -0.73 -8.74 16 20 C -0.16 -1.86 7.07 -25.82 -0.18 -2.05 16 21 C -0.14 -1.36 8.02 -25.82 -0.21 -1.57 16 22 C -0.13 -1.30 7.48 -25.92 -0.19 -1.50 16 23 C 0.07 1.18 3.36 -26.61 -0.09 1.09 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 O -0.57 -9.40 13.21 -35.23 -0.47 -9.86 16 26 C 0.15 3.11 4.64 -3.71 -0.02 3.09 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 29 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.41 6.40 6.87 -40.82 -0.28 6.12 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.39 5.79 6.33 45.56 0.29 6.08 16 36 H 0.08 0.89 8.06 -51.92 -0.42 0.47 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.38 4.92 9.08 45.56 0.41 5.33 16 43 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 44 H 0.02 0.53 6.64 -51.93 -0.34 0.18 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -29.25 346.44 -8.53 -37.78 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -5.63 Total: 16.57 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.59 Total: 2.25 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.12 Total: -49.13 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.37 Total: -28.29 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.25 -8.53 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099824029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.428 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds