Wall clock time and date at job start Fri Apr 10 2020 17:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48501 * 109.47316 * 269.99681 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00181 * 3 2 1 6 6 H 1.48506 * 109.47088 * 149.99776 * 3 2 1 7 7 C 1.38811 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00425 * 197.35893 * 7 2 1 9 9 N 1.36942 * 119.99824 * 17.36918 * 7 2 1 10 10 C 1.46928 * 120.62684 * 207.66333 * 9 7 2 11 11 C 1.53192 * 108.77076 * 233.62516 * 10 9 7 12 12 C 1.53034 * 109.31531 * 305.36516 * 11 10 9 13 13 H 1.09001 * 109.45206 * 301.34928 * 12 11 10 14 14 N 1.46504 * 109.46071 * 181.38718 * 12 11 10 15 15 C 1.34778 * 119.99906 * 84.65651 * 14 12 11 16 16 O 1.21282 * 120.00059 * 0.27677 * 15 14 12 17 17 C 1.50699 * 119.99924 * 180.27907 * 15 14 12 18 18 C 1.52996 * 109.47319 * 180.02562 * 17 15 14 19 19 O 1.42902 * 112.84896 * 55.32992 * 18 17 15 20 20 C 1.53781 * 113.61103 * 284.13476 * 18 17 15 21 21 C 1.53959 * 87.01755 * 220.04518 * 20 18 17 22 22 C 1.53775 * 113.61664 * 186.52586 * 18 17 15 23 23 C 1.53039 * 109.53691 * 61.36847 * 12 11 10 24 24 H 1.08995 * 109.50037 * 58.58467 * 23 12 11 25 25 O 1.42903 * 109.49650 * 178.67938 * 23 12 11 26 26 C 1.46927 * 120.63147 * 27.67967 * 9 7 2 27 27 H 0.97002 * 119.99647 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58571 * 353.41228 * 10 9 7 29 29 H 1.09006 * 109.58365 * 113.69875 * 10 9 7 30 30 H 1.09006 * 109.49191 * 185.41301 * 11 10 9 31 31 H 1.09001 * 109.49890 * 65.32013 * 11 10 9 32 32 H 0.97000 * 120.00085 * 264.93708 * 14 12 11 33 33 H 1.09006 * 109.46953 * 299.99942 * 17 15 14 34 34 H 1.08996 * 109.47276 * 59.99351 * 17 15 14 35 35 H 0.96706 * 114.00141 * 309.66837 * 19 18 17 36 36 H 1.08989 * 113.61734 * 334.56374 * 20 18 17 37 37 H 1.09003 * 113.61014 * 105.47149 * 20 18 17 38 38 H 1.09000 * 113.53651 * 270.81033 * 21 20 18 39 39 H 1.09002 * 113.73906 * 139.94910 * 21 20 18 40 40 H 1.09000 * 113.61778 * 254.52711 * 22 18 17 41 41 H 1.09004 * 113.61438 * 25.34964 * 22 18 17 42 42 H 0.96701 * 113.99859 * 179.97438 * 25 23 12 43 43 H 1.08991 * 109.58622 * 6.58859 * 26 9 7 44 44 H 1.08997 * 109.58821 * 246.15903 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3724 -2.3612 -0.3530 10 6 1.8196 -3.6547 0.1814 11 6 2.0752 -4.6097 -0.9888 12 6 0.8198 -4.6899 -1.8602 13 1 -0.0193 -5.0367 -1.2571 14 7 1.0495 -5.6279 -2.9619 15 6 0.8548 -6.9483 -2.7744 16 8 0.4847 -7.3594 -1.6950 17 6 1.0971 -7.9138 -3.9058 18 6 0.8040 -9.3387 -3.4319 19 8 -0.5119 -9.4851 -2.8944 20 6 1.9051 -9.9281 -2.5345 21 6 1.6919 -11.2566 -3.2827 22 6 1.1720 -10.4188 -4.4628 23 6 0.5016 -3.3048 -2.4280 24 1 1.3502 -2.9467 -3.0108 25 8 -0.6528 -3.3866 -3.2662 26 6 0.2280 -2.3349 -1.2741 27 1 -0.4850 0.8401 0.0004 28 1 2.7402 -3.5171 0.7486 29 1 1.0482 -4.0679 0.8313 30 1 2.3147 -5.6010 -0.6036 31 1 2.9091 -4.2394 -1.5851 32 1 1.3455 -5.2991 -3.8251 33 1 0.4414 -7.6670 -4.7408 34 1 2.1363 -7.8438 -4.2270 35 1 -0.7407 -8.8225 -2.2282 36 1 2.8873 -9.4860 -2.7010 37 1 1.6324 -9.9712 -1.4800 38 1 0.9314 -11.8935 -2.8309 39 1 2.6167 -11.7910 -3.5004 40 1 0.3085 -10.8574 -4.9628 41 1 1.9526 -10.1105 -5.1584 42 1 -0.9130 -2.5429 -3.6608 43 1 0.0985 -1.3266 -1.6673 44 1 -0.6741 -2.6417 -0.7450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099824030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:10 Heat of formation + Delta-G solvation = -98.262543 kcal Electronic energy + Delta-G solvation = -25314.038236 eV Core-core repulsion = 21653.427851 eV Total energy + Delta-G solvation = -3660.610385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49759 -39.06238 -37.71331 -35.31690 -34.65556 -34.22063 -32.32752 -30.70335 -29.20844 -28.77369 -25.87692 -25.25861 -23.57928 -22.44157 -21.75432 -20.30807 -19.72412 -19.47164 -17.33977 -16.81024 -16.68555 -16.48665 -15.92028 -15.50983 -15.14063 -14.90613 -14.75709 -14.06583 -13.83605 -13.65941 -13.42394 -13.10105 -12.91807 -12.60083 -12.42726 -12.24510 -11.99410 -11.72748 -11.64107 -11.33290 -11.25760 -10.99178 -10.87687 -10.83330 -10.54735 -10.45614 -10.23624 -10.06249 -9.86334 -9.72547 -9.54955 -9.36255 -8.82625 -8.57752 -6.82976 -5.90984 -3.34756 2.69007 3.26654 3.30948 3.37738 3.39074 4.01065 4.36850 4.41166 4.46862 4.55984 4.57076 4.70349 5.07185 5.14522 5.25834 5.30615 5.35701 5.41887 5.47429 5.51973 5.54799 5.59384 5.75028 5.85762 5.94735 5.98178 6.04154 6.11091 6.16175 6.22893 6.38168 6.41519 6.65440 6.76670 6.85875 7.07297 7.40760 7.62980 7.68910 7.76059 8.04465 8.31490 8.34665 9.07122 9.69848 10.25818 11.17409 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.003183 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.329955 B = 8795.377568 C = 9082.038083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.161 3.839 13 H 0.088 0.912 14 N -0.712 5.712 15 C 0.515 3.485 16 O -0.548 6.548 17 C -0.165 4.165 18 C 0.130 3.870 19 O -0.550 6.550 20 C -0.160 4.160 21 C -0.135 4.135 22 C -0.129 4.129 23 C 0.072 3.928 24 H 0.051 0.949 25 O -0.573 6.573 26 C 0.148 3.852 27 H 0.256 0.744 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.398 0.602 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.391 0.609 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.376 0.624 43 H 0.094 0.906 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -14.995 -10.632 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.106 0.894 14 N -0.360 5.360 15 C 0.302 3.698 16 O -0.428 6.428 17 C -0.205 4.205 18 C 0.088 3.912 19 O -0.362 6.362 20 C -0.198 4.198 21 C -0.173 4.173 22 C -0.166 4.166 23 C 0.011 3.989 24 H 0.069 0.931 25 O -0.378 6.378 26 C 0.021 3.979 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.223 0.777 43 H 0.112 0.888 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.358 -16.234 -10.051 19.387 hybrid contribution 0.583 2.279 -0.235 2.364 sum 3.941 -13.955 -10.286 17.778 Atomic orbital electron populations 1.70033 1.05265 1.25738 1.53515 1.25086 0.95333 0.98580 1.00622 0.86254 0.79170 0.83428 0.77708 1.21403 1.21664 1.20328 1.19224 0.92885 0.84631 1.41889 0.91309 1.44018 1.35652 1.01801 1.49848 1.20938 0.98262 0.86329 0.92683 1.22406 0.96615 1.00221 0.98629 1.21015 0.98669 0.87135 0.87493 0.89371 1.46154 1.67985 1.06335 1.15570 1.20563 0.76892 0.83138 0.89239 1.90567 1.47437 1.77709 1.27086 1.22362 1.04463 0.95171 0.98516 1.21755 0.84163 0.90703 0.94560 1.86307 1.29662 1.59021 1.61191 1.23588 0.98960 0.96666 1.00608 1.22776 1.01054 0.96514 0.96934 1.23056 1.01114 0.96081 0.96356 1.22975 0.87056 0.95462 0.93410 0.93089 1.86410 1.48333 1.36653 1.66396 1.21419 0.89815 0.98262 0.88402 0.93446 0.92119 0.95813 0.91821 0.92077 0.76877 0.88226 0.88018 0.75403 0.89926 0.90474 0.89900 0.91521 0.90588 0.88998 0.77690 0.88789 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 11.19 55.49 0.62 -24.60 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.77 9.59 -15.06 -0.14 -6.91 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.17 2.99 -172.32 -0.52 -14.69 16 10 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 11 C -0.14 -2.41 5.65 -26.61 -0.15 -2.56 16 12 C 0.16 2.78 2.11 -67.89 -0.14 2.63 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 14 N -0.71 -9.88 4.92 -53.77 -0.26 -10.15 16 15 C 0.51 7.12 7.53 -10.99 -0.08 7.04 16 16 O -0.55 -9.26 13.29 -13.59 -0.18 -9.44 16 17 C -0.16 -1.68 5.33 -27.89 -0.15 -1.83 16 18 C 0.13 1.47 1.09 -89.81 -0.10 1.38 16 19 O -0.55 -7.73 13.40 -54.38 -0.73 -8.46 16 20 C -0.16 -1.74 7.07 -25.82 -0.18 -1.92 16 21 C -0.14 -1.26 8.02 -25.83 -0.21 -1.47 16 22 C -0.13 -1.16 7.47 -25.92 -0.19 -1.35 16 23 C 0.07 1.30 3.14 -26.61 -0.08 1.21 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 O -0.57 -9.47 13.16 -35.23 -0.46 -9.93 16 26 C 0.15 3.35 4.94 -3.71 -0.02 3.34 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.40 4.60 8.60 -40.82 -0.35 4.24 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.39 5.73 6.33 45.56 0.29 6.02 16 36 H 0.08 0.80 8.06 -51.94 -0.42 0.38 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.38 4.98 9.08 45.56 0.41 5.39 16 43 H 0.09 2.33 6.03 -51.93 -0.31 2.02 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -30.75 350.66 -8.64 -39.40 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.80 Total: 14.22 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.56 Total: 2.51 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.16 Total: -49.43 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.37 Total: -27.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.75 -8.64 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099824030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.867 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds