Wall clock time and date at job start Fri Apr 10 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48501 * 109.47316 * 269.99681 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00181 * 3 2 1 6 6 H 1.48506 * 109.47088 * 149.99776 * 3 2 1 7 7 C 1.38811 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00425 * 197.35893 * 7 2 1 9 9 N 1.36942 * 119.99824 * 17.36918 * 7 2 1 10 10 C 1.46928 * 120.62684 * 207.66333 * 9 7 2 11 11 C 1.53192 * 108.77076 * 233.62516 * 10 9 7 12 12 C 1.53034 * 109.31531 * 305.36516 * 11 10 9 13 13 H 1.09001 * 109.45206 * 301.34928 * 12 11 10 14 14 N 1.46504 * 109.46071 * 181.38718 * 12 11 10 15 15 C 1.34778 * 119.99906 * 84.65651 * 14 12 11 16 16 O 1.21282 * 120.00059 * 0.27677 * 15 14 12 17 17 C 1.50699 * 119.99924 * 180.27907 * 15 14 12 18 18 C 1.52996 * 109.47319 * 180.02562 * 17 15 14 19 19 O 1.42902 * 112.84896 * 55.32992 * 18 17 15 20 20 C 1.53781 * 113.61103 * 284.13476 * 18 17 15 21 21 C 1.53959 * 87.01755 * 220.04518 * 20 18 17 22 22 C 1.53775 * 113.61664 * 186.52586 * 18 17 15 23 23 C 1.53039 * 109.53691 * 61.36847 * 12 11 10 24 24 H 1.08995 * 109.50037 * 58.58467 * 23 12 11 25 25 O 1.42903 * 109.49650 * 178.67938 * 23 12 11 26 26 C 1.46927 * 120.63147 * 27.67967 * 9 7 2 27 27 H 0.97002 * 119.99647 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58571 * 353.41228 * 10 9 7 29 29 H 1.09006 * 109.58365 * 113.69875 * 10 9 7 30 30 H 1.09006 * 109.49191 * 185.41301 * 11 10 9 31 31 H 1.09001 * 109.49890 * 65.32013 * 11 10 9 32 32 H 0.97000 * 120.00085 * 264.93708 * 14 12 11 33 33 H 1.09006 * 109.46953 * 299.99942 * 17 15 14 34 34 H 1.08996 * 109.47276 * 59.99351 * 17 15 14 35 35 H 0.96706 * 114.00141 * 309.66837 * 19 18 17 36 36 H 1.08989 * 113.61734 * 334.56374 * 20 18 17 37 37 H 1.09003 * 113.61014 * 105.47149 * 20 18 17 38 38 H 1.09000 * 113.53651 * 270.81033 * 21 20 18 39 39 H 1.09002 * 113.73906 * 139.94910 * 21 20 18 40 40 H 1.09000 * 113.61778 * 254.52711 * 22 18 17 41 41 H 1.09004 * 113.61438 * 25.34964 * 22 18 17 42 42 H 0.96701 * 113.99859 * 179.97438 * 25 23 12 43 43 H 1.08991 * 109.58622 * 6.58859 * 26 9 7 44 44 H 1.08997 * 109.58821 * 246.15903 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3724 -2.3612 -0.3530 10 6 1.8196 -3.6547 0.1814 11 6 2.0752 -4.6097 -0.9888 12 6 0.8198 -4.6899 -1.8602 13 1 -0.0193 -5.0367 -1.2571 14 7 1.0495 -5.6279 -2.9619 15 6 0.8548 -6.9483 -2.7744 16 8 0.4847 -7.3594 -1.6950 17 6 1.0971 -7.9138 -3.9058 18 6 0.8040 -9.3387 -3.4319 19 8 -0.5119 -9.4851 -2.8944 20 6 1.9051 -9.9281 -2.5345 21 6 1.6919 -11.2566 -3.2827 22 6 1.1720 -10.4188 -4.4628 23 6 0.5016 -3.3048 -2.4280 24 1 1.3502 -2.9467 -3.0108 25 8 -0.6528 -3.3866 -3.2662 26 6 0.2280 -2.3349 -1.2741 27 1 -0.4850 0.8401 0.0004 28 1 2.7402 -3.5171 0.7486 29 1 1.0482 -4.0679 0.8313 30 1 2.3147 -5.6010 -0.6036 31 1 2.9091 -4.2394 -1.5851 32 1 1.3455 -5.2991 -3.8251 33 1 0.4414 -7.6670 -4.7408 34 1 2.1363 -7.8438 -4.2270 35 1 -0.7407 -8.8225 -2.2282 36 1 2.8873 -9.4860 -2.7010 37 1 1.6324 -9.9712 -1.4800 38 1 0.9314 -11.8935 -2.8309 39 1 2.6167 -11.7910 -3.5004 40 1 0.3085 -10.8574 -4.9628 41 1 1.9526 -10.1105 -5.1584 42 1 -0.9130 -2.5429 -3.6608 43 1 0.0985 -1.3266 -1.6673 44 1 -0.6741 -2.6417 -0.7450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099824030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:09 Heat of formation + Delta-G solvation = -122.204302 kcal Electronic energy + Delta-G solvation = -25315.076428 eV Core-core repulsion = 21653.427851 eV Total energy + Delta-G solvation = -3661.648578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53361 -40.24739 -39.02477 -36.90226 -35.88877 -35.34830 -34.00983 -31.97775 -30.74583 -30.25206 -27.02846 -26.61239 -24.71907 -23.93833 -23.29332 -21.49885 -21.04500 -20.53486 -18.98300 -18.13469 -17.96740 -17.72637 -17.10934 -16.66663 -16.53125 -15.99811 -15.82629 -15.61683 -15.42406 -15.05421 -14.84312 -14.48895 -13.99917 -13.87967 -13.76820 -13.39538 -13.35815 -13.17797 -13.06164 -12.67507 -12.54824 -12.49164 -12.14578 -12.06821 -12.01544 -11.89216 -11.74528 -11.44850 -11.34691 -10.99695 -10.65325 -10.61647 -10.58853 -10.04232 -8.78476 -7.92249 -5.39661 1.48100 1.49356 1.58541 1.62215 2.15774 2.48517 3.10084 3.16773 3.25286 3.56614 3.62120 3.67855 3.75991 3.89377 3.95346 4.05331 4.22856 4.29817 4.40649 4.43378 4.44275 4.55860 4.70762 4.74947 4.82252 4.87011 4.88996 4.93565 5.03076 5.07511 5.14364 5.16678 5.31270 5.34815 5.44323 5.50428 5.54969 5.62420 6.31594 6.56716 6.72072 6.80673 7.08442 7.28612 7.75962 8.28674 9.14329 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.003183 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.329955 B = 8795.377568 C = 9082.038083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.169 3.831 13 H 0.054 0.946 14 N -0.703 5.703 15 C 0.511 3.489 16 O -0.583 6.583 17 C -0.153 4.153 18 C 0.110 3.890 19 O -0.569 6.569 20 C -0.164 4.164 21 C -0.134 4.134 22 C -0.117 4.117 23 C 0.092 3.908 24 H 0.067 0.933 25 O -0.574 6.574 26 C 0.156 3.844 27 H 0.252 0.748 28 H 0.066 0.934 29 H 0.007 0.993 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.384 0.616 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.392 0.608 43 H 0.070 0.930 44 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -15.693 -13.101 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.161 4.161 12 C 0.064 3.936 13 H 0.073 0.927 14 N -0.353 5.353 15 C 0.299 3.701 16 O -0.465 6.465 17 C -0.193 4.193 18 C 0.069 3.931 19 O -0.380 6.380 20 C -0.202 4.202 21 C -0.171 4.171 22 C -0.154 4.154 23 C 0.031 3.969 24 H 0.084 0.916 25 O -0.380 6.380 26 C 0.029 3.971 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.238 0.762 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.241 0.759 43 H 0.089 0.911 44 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 5.548 -16.957 -12.567 21.823 hybrid contribution -0.143 2.443 0.600 2.519 sum 5.406 -14.514 -11.966 19.572 Atomic orbital electron populations 1.70195 1.06739 1.26098 1.55031 1.25847 0.96032 1.01658 1.00861 0.85220 0.77998 0.79163 0.77765 1.20680 1.22499 1.19341 1.19568 0.93232 0.85596 1.41231 0.90916 1.44267 1.35679 1.02404 1.50599 1.21046 0.97762 0.85725 0.94006 1.22179 0.97003 0.99532 0.97367 1.20623 0.97419 0.87351 0.88213 0.92729 1.45928 1.68081 1.05976 1.15265 1.21292 0.75756 0.83240 0.89785 1.90570 1.48741 1.78206 1.28961 1.22384 1.06976 0.92883 0.97010 1.22160 0.83042 0.92267 0.95633 1.86294 1.31601 1.59030 1.61110 1.23634 0.99597 0.97980 0.99011 1.22761 1.01653 0.95927 0.96767 1.23113 1.01731 0.94522 0.96039 1.22546 0.87921 0.94633 0.91768 0.91560 1.86391 1.47848 1.37952 1.65838 1.21227 0.88272 0.98172 0.89415 0.93921 0.91587 0.97501 0.91002 0.90647 0.75014 0.86530 0.84473 0.76250 0.88225 0.93295 0.91427 0.89370 0.90986 0.85797 0.75887 0.91148 0.98894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.66 11.19 21.65 0.24 -53.42 16 2 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 3 Si 0.97 42.98 29.59 68.60 2.03 45.01 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.27 -14.08 9.59 84.03 0.81 -13.27 16 8 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 9 N -0.60 -29.48 2.99 -699.09 -2.09 -31.58 16 10 C 0.14 5.85 6.52 86.36 0.56 6.42 16 11 C -0.12 -4.06 5.65 30.67 0.17 -3.89 16 12 C 0.17 5.72 2.11 45.02 0.10 5.82 16 13 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 14 N -0.70 -17.91 4.92 -442.41 -2.18 -20.08 16 15 C 0.51 13.18 7.53 87.66 0.66 13.84 16 16 O -0.58 -19.64 13.29 15.27 0.20 -19.43 16 17 C -0.15 -2.59 5.33 29.85 0.16 -2.43 16 18 C 0.11 2.27 1.09 -10.27 -0.01 2.26 16 19 O -0.57 -15.92 13.40 -130.67 -1.75 -17.67 16 20 C -0.16 -3.29 7.07 31.18 0.22 -3.07 16 21 C -0.13 -2.20 8.02 31.18 0.25 -1.95 16 22 C -0.12 -1.73 7.47 31.12 0.23 -1.50 16 23 C 0.09 3.26 3.14 30.67 0.10 3.35 16 24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 25 O -0.57 -18.28 13.16 -148.98 -1.96 -20.24 16 26 C 0.16 7.25 4.94 86.36 0.43 7.68 16 27 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 29 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.41 8.06 8.60 -92.71 -0.80 7.27 16 33 H 0.12 1.65 8.14 -2.38 -0.02 1.64 16 34 H 0.14 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.38 11.62 6.33 -74.05 -0.47 11.15 16 36 H 0.10 1.62 8.06 -2.39 -0.02 1.60 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 1.06 8.10 -2.39 -0.02 1.04 16 42 H 0.39 9.87 9.08 -74.06 -0.67 9.20 16 43 H 0.07 3.59 6.03 -2.39 -0.01 3.58 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -68.78 350.66 -2.33 -71.12 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.92 Total: 35.23 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 4.09 Total: 11.07 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -4.03 Total: -105.08 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -3.51 Total: -57.35 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -68.78 -2.33 -71.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099824030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.086 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds