Wall clock time and date at job start Fri Apr 10 2020 17:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47211 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47067 * 299.99444 * 3 2 1 6 6 H 1.48494 * 109.47235 * 59.99964 * 3 2 1 7 7 C 1.38811 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00213 * 179.97438 * 9 7 2 11 11 C 1.53778 * 113.61715 * 204.99702 * 10 9 7 12 12 C 1.53778 * 87.08424 * 220.01692 * 11 10 9 13 13 C 1.52999 * 113.61308 * 139.97986 * 12 11 10 14 14 N 1.46499 * 109.47143 * 176.53033 * 13 12 11 15 15 C 1.34777 * 119.99913 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99833 * 180.02562 * 15 14 13 18 18 O 1.42901 * 109.47255 * 179.97438 * 17 15 14 19 19 C 1.42904 * 114.00207 * 180.02562 * 18 17 15 20 20 H 1.08995 * 111.01752 * 25.77524 * 19 18 17 21 21 C 1.55305 * 111.12473 * 150.00103 * 19 18 17 22 22 C 1.54382 * 102.43395 * 152.15146 * 21 19 18 23 23 O 1.43232 * 107.59109 * 338.54226 * 22 21 19 24 24 C 1.43649 * 109.97368 * 358.28680 * 23 22 21 25 25 C 1.53786 * 87.17223 * 25.39334 * 12 11 10 26 26 H 0.97001 * 120.00045 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99673 * 359.97438 * 9 7 2 28 28 H 1.09004 * 112.91061 * 336.25280 * 10 9 7 29 29 H 1.08999 * 113.61320 * 105.47046 * 11 10 9 30 30 H 1.09005 * 113.68861 * 334.58394 * 11 10 9 31 31 H 1.08997 * 113.61910 * 270.80172 * 12 11 10 32 32 H 1.08999 * 109.46974 * 56.53349 * 13 12 11 33 33 H 1.09000 * 109.47351 * 296.53291 * 13 12 11 34 34 H 0.96996 * 120.00118 * 0.02562 * 14 13 12 35 35 H 1.09006 * 109.47374 * 59.99790 * 17 15 14 36 36 H 1.08999 * 109.47509 * 299.99793 * 17 15 14 37 37 H 1.09002 * 110.85041 * 33.85992 * 21 19 18 38 38 H 1.09001 * 110.84389 * 270.44128 * 21 19 18 39 39 H 1.09009 * 109.82643 * 98.05629 * 22 21 19 40 40 H 1.08995 * 109.83122 * 219.02553 * 22 21 19 41 41 H 1.08999 * 110.31137 * 143.34271 * 24 23 22 42 42 H 1.09000 * 110.31061 * 265.41699 * 24 23 22 43 43 H 1.08995 * 113.61983 * 89.15577 * 25 12 11 44 44 H 1.08996 * 113.60866 * 220.06073 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2602 -4.8288 -0.5949 12 6 1.8481 -5.6976 0.5296 13 6 0.8451 -6.6852 1.1291 14 7 1.5181 -7.5188 2.1282 15 6 0.8266 -8.4669 2.7910 16 8 -0.3529 -8.6297 2.5608 17 6 1.5189 -9.3241 3.8192 18 8 0.5821 -10.2466 4.3791 19 6 1.1395 -11.1111 5.3711 20 1 2.0064 -10.6525 5.8467 21 6 0.0722 -11.5163 6.4240 22 6 0.5823 -12.8930 6.9015 23 8 1.4442 -13.4126 5.8823 24 6 1.4975 -12.5012 4.7732 25 6 2.0012 -4.4033 1.3459 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 0.0005 28 1 3.0662 -3.5647 -0.4038 29 1 1.5918 -5.1212 -1.5912 30 1 0.1797 -4.7014 -0.5288 31 1 2.7980 -6.1646 0.2694 32 1 0.4425 -7.3188 0.3388 33 1 0.0323 -6.1349 1.6030 34 1 2.4614 -7.3885 2.3126 35 1 1.9208 -8.6902 4.6097 36 1 2.3322 -9.8741 3.3458 37 1 -0.9121 -11.6054 5.9643 38 1 0.0504 -10.8034 7.2483 39 1 1.1375 -12.7789 7.8326 40 1 -0.2604 -13.5675 7.0524 41 1 2.5006 -12.4823 4.3470 42 1 0.7697 -12.7866 4.0137 43 1 1.1238 -4.1581 1.9444 44 1 2.9300 -4.3527 1.9140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100326335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:17 Heat of formation + Delta-G solvation = -95.398916 kcal Electronic energy + Delta-G solvation = -23249.000437 eV Core-core repulsion = 19588.514228 eV Total energy + Delta-G solvation = -3660.486209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27882 -39.68387 -38.53245 -37.31572 -34.73162 -33.33030 -31.98557 -30.45390 -29.57422 -28.62624 -26.42916 -25.12696 -23.83553 -22.94160 -22.03473 -21.12003 -20.82954 -19.11594 -17.89059 -17.63376 -17.06555 -16.73676 -16.31913 -16.16115 -15.43447 -15.31309 -14.97537 -14.78318 -14.38306 -14.06198 -13.90338 -13.59025 -13.25785 -12.99107 -12.85073 -12.71820 -12.10351 -12.02020 -11.91687 -11.83924 -11.43472 -11.27237 -11.24486 -10.87818 -10.55258 -10.28953 -10.20543 -10.13766 -9.93825 -9.87381 -9.86336 -9.52020 -9.10871 -8.89994 -6.99021 -5.80899 -3.09925 2.44516 2.46844 3.31370 3.40443 3.45879 3.48383 3.67907 3.91908 4.31747 4.36943 4.49760 4.55833 4.63872 4.68581 4.77119 4.79683 4.93572 4.96791 5.14708 5.18838 5.23115 5.30533 5.40686 5.43780 5.46326 5.50748 5.77929 5.80572 5.89276 6.05970 6.19809 6.27247 6.31816 6.37163 6.41180 6.54930 6.60840 6.78831 7.07722 7.35620 7.66869 8.08109 8.37579 9.48696 10.06962 10.40961 11.41472 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.037381 B = 0.001942 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.864685 B =14415.968065 C =14623.918952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.723 5.723 15 C 0.510 3.490 16 O -0.521 6.521 17 C 0.041 3.959 18 O -0.343 6.343 19 C 0.052 3.948 20 H 0.085 0.915 21 C -0.156 4.156 22 C 0.052 3.948 23 O -0.380 6.380 24 C 0.031 3.969 25 C -0.162 4.162 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -24.559 10.938 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.011 3.989 14 N -0.376 5.376 15 C 0.294 3.706 16 O -0.396 6.396 17 C -0.039 4.039 18 O -0.261 6.261 19 C -0.007 4.007 20 H 0.103 0.897 21 C -0.193 4.193 22 C -0.024 4.024 23 O -0.299 6.299 24 C -0.046 4.046 25 C -0.203 4.203 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.971 -24.688 10.705 27.365 hybrid contribution 0.757 1.232 0.229 1.464 sum 5.728 -23.456 10.934 26.506 Atomic orbital electron populations 1.69671 1.05143 1.25665 1.57457 1.24782 0.95536 0.97831 1.02831 0.86114 0.78762 0.84074 0.77204 1.20539 1.21827 1.21862 1.19349 0.91097 0.84236 1.42885 0.91031 1.42421 1.05787 0.99894 1.86948 1.21547 0.95311 0.85050 0.92722 1.23446 1.01087 0.96973 0.96693 1.22643 0.98360 0.94373 0.99262 1.21464 0.95470 0.91916 0.90093 1.45925 1.13854 1.36237 1.41610 1.20142 0.87517 0.80862 0.82055 1.90751 1.15483 1.68397 1.64947 1.22350 0.92378 0.92555 0.96591 1.88066 1.34226 1.48443 1.55317 1.23972 0.96744 0.90757 0.89198 0.89702 1.23184 1.00376 0.97123 0.98656 1.23101 0.94028 0.93736 0.91567 1.88436 1.67902 1.44960 1.28644 1.23933 1.02504 0.88191 0.90017 1.23985 1.01333 0.94967 0.99995 0.93473 0.78049 0.90666 0.91954 0.90069 0.89341 0.91632 0.91085 0.76549 0.89880 0.90075 0.89010 0.89194 0.90838 0.90816 0.89379 0.90809 0.90342 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -17.54 5.40 -52.55 -0.28 -17.82 16 10 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 11 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 12 C -0.13 -1.60 3.75 -89.81 -0.34 -1.93 16 13 C 0.13 1.67 5.50 -4.04 -0.02 1.65 16 14 N -0.72 -7.43 5.56 -60.30 -0.33 -7.76 16 15 C 0.51 6.14 7.91 -10.98 -0.09 6.05 16 16 O -0.52 -8.91 16.50 -14.35 -0.24 -9.14 16 17 C 0.04 0.33 6.25 36.01 0.23 0.56 16 18 O -0.34 -3.56 9.71 -55.14 -0.54 -4.10 16 19 C 0.05 0.38 3.63 -24.18 -0.09 0.30 16 20 H 0.09 0.46 7.83 -51.93 -0.41 0.05 16 21 C -0.16 -1.04 6.74 -24.78 -0.17 -1.21 16 22 C 0.05 0.33 7.80 37.88 0.30 0.63 16 23 O -0.38 -3.40 11.36 -35.23 -0.40 -3.80 16 24 C 0.03 0.23 7.55 38.49 0.29 0.52 16 25 C -0.16 -2.55 7.45 -25.82 -0.19 -2.74 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 10.14 7.93 -40.82 -0.32 9.82 16 28 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 34 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 35 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.39 7.92 -51.93 -0.41 0.97 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -34.42 366.39 -8.74 -43.16 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.35 Total: 7.18 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.82 Total: -3.07 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.11 Total: -52.86 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.17 Total: -17.04 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.42 -8.74 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100326335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.240 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds