Wall clock time and date at job start Fri Apr 10 2020 17:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47049 * 239.99827 * 3 2 1 5 5 H 1.48494 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47248 * 120.00295 * 3 2 1 7 7 C 1.38955 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99529 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99704 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99859 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47078 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00090 * 170.00292 * 13 12 10 15 15 C 1.53243 * 109.34007 * 187.25369 * 14 13 12 16 16 N 1.47081 * 108.51985 * 306.16684 * 15 14 13 17 17 C 1.34778 * 120.88046 * 231.18764 * 16 15 14 18 18 O 1.21278 * 119.99828 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99741 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.46617 * 179.97438 * 19 17 16 21 21 N 1.34784 * 119.99774 * 180.02562 * 20 19 17 22 22 O 1.21283 * 120.00521 * 359.73030 * 20 19 17 23 23 C 1.47081 * 118.23570 * 51.45978 * 16 15 14 24 24 C 1.46900 * 110.99810 * 294.30062 * 13 12 10 25 25 H 0.97003 * 120.00037 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99774 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47164 * 60.00328 * 12 10 9 28 28 H 1.08999 * 109.47229 * 299.99821 * 12 10 9 29 29 H 1.09001 * 109.49450 * 67.29129 * 14 13 12 30 30 H 1.09004 * 109.49064 * 307.21121 * 14 13 12 31 31 H 1.08999 * 109.62443 * 186.46025 * 15 14 13 32 32 H 1.08994 * 109.62716 * 65.87575 * 15 14 13 33 33 H 1.09001 * 109.46798 * 60.00692 * 19 17 16 34 34 H 1.08993 * 109.47546 * 300.00244 * 19 17 16 35 35 H 0.96999 * 120.00044 * 179.72920 * 21 20 19 36 36 H 0.97005 * 119.99846 * 359.72750 * 21 20 19 37 37 H 1.08995 * 109.62834 * 68.25379 * 23 16 15 38 38 H 1.08997 * 109.62659 * 188.83364 * 23 16 15 39 39 H 1.08997 * 109.49311 * 292.70629 * 24 13 12 40 40 H 1.09002 * 109.49367 * 52.78994 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9796 0.0016 14 6 1.5137 -7.2573 0.2403 15 6 2.5563 -8.3669 0.4136 16 7 3.4541 -8.3505 -0.7513 17 6 3.7044 -9.4769 -1.4477 18 8 3.1862 -10.5222 -1.1166 19 6 4.6272 -9.4372 -2.6385 20 6 4.7376 -10.8168 -3.2346 21 7 5.5152 -11.0235 -4.3159 22 8 4.1310 -11.7423 -2.7381 23 6 4.0763 -7.0734 -1.1323 24 6 2.9692 -6.0135 -1.2483 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6166 -4.9209 -0.8886 28 1 0.6173 -4.9205 0.8914 29 1 0.8721 -7.4905 -0.6095 30 1 0.9085 -7.1825 1.1438 31 1 2.0557 -9.3331 0.4764 32 1 3.1319 -8.1898 1.3220 33 1 5.6138 -9.0984 -2.3224 34 1 4.2286 -8.7496 -3.3843 35 1 5.5894 -11.9123 -4.6972 36 1 6.0007 -10.2834 -4.7127 37 1 4.7953 -6.7744 -0.3696 38 1 4.5811 -7.1840 -2.0920 39 1 2.3074 -6.2640 -2.0773 40 1 3.4197 -5.0367 -1.4244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112734752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:23 Heat of formation + Delta-G solvation = -88.432992 kcal Electronic energy + Delta-G solvation = -24131.204558 eV Core-core repulsion = 20367.480070 eV Total energy + Delta-G solvation = -3763.724487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58129 -39.30918 -38.39458 -37.10969 -34.54429 -33.92011 -33.74428 -31.64914 -31.30061 -30.20689 -28.60239 -25.70540 -23.93523 -23.73347 -21.97998 -20.69342 -19.31590 -18.93794 -17.95248 -17.67694 -17.50543 -16.18497 -16.13922 -16.05256 -15.59957 -15.09017 -14.81216 -14.79221 -14.51528 -14.01672 -13.81357 -13.71998 -13.63987 -13.36370 -13.00628 -12.48238 -12.19007 -11.95532 -11.63398 -11.55832 -11.29811 -11.17987 -11.14376 -10.84136 -10.47768 -10.26388 -10.25233 -9.92344 -9.55395 -9.49946 -8.84230 -8.39141 -8.02802 -7.92454 -6.45858 -3.86986 2.39261 2.63159 2.70060 3.16412 3.22999 3.26636 3.38159 3.84179 3.91469 4.18607 4.22583 4.60895 4.80601 4.87683 4.93258 4.99743 5.09359 5.20012 5.21551 5.32763 5.41297 5.50082 5.73764 5.78192 5.84465 5.88758 6.10863 6.15398 6.21634 6.47713 6.50481 7.00945 7.11826 7.27982 7.38388 7.50771 8.01314 8.01422 8.19977 8.56677 9.13297 9.49662 10.00732 10.71684 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.032472 B = 0.002731 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.075079 B =10248.983413 C =10793.693613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.040 3.960 15 C 0.121 3.879 16 N -0.615 5.615 17 C 0.514 3.486 18 O -0.504 6.504 19 C -0.168 4.168 20 C 0.516 3.484 21 N -0.861 5.861 22 O -0.498 6.498 23 C 0.114 3.886 24 C 0.038 3.962 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.402 0.598 36 H 0.400 0.600 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.027 0.973 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -14.795 -7.137 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.229 3.771 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.002 4.002 16 N -0.351 5.351 17 C 0.300 3.700 18 O -0.378 6.378 19 C -0.210 4.210 20 C 0.298 3.702 21 N -0.427 5.427 22 O -0.370 6.370 23 C -0.009 4.009 24 C -0.091 4.091 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.233 0.767 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.247 -15.624 -6.089 18.267 hybrid contribution -0.505 1.059 -1.091 1.602 sum 6.742 -14.565 -7.180 17.583 Atomic orbital electron populations 1.69604 1.05961 1.28334 1.50334 1.25272 0.95628 0.99761 0.97249 0.85916 0.78767 0.80459 0.79068 1.19920 1.20990 1.19860 1.19641 0.93320 0.82182 1.47830 0.87918 1.41873 1.09235 1.04614 1.64169 1.19705 0.88388 0.84495 0.84549 1.90468 1.13644 1.86880 1.55417 1.21856 0.93897 0.91073 1.01677 1.61500 1.25361 1.01515 1.35548 1.22519 0.95462 0.89497 1.01366 1.21668 0.91503 0.99130 0.87867 1.48257 1.47582 1.08569 1.30709 1.19900 0.82566 0.83622 0.83940 1.90835 1.49979 1.29234 1.67722 1.21635 1.03033 0.97472 0.98906 1.20040 0.79222 0.90482 0.80454 1.43870 1.51270 1.14734 1.32830 1.90909 1.43090 1.43701 1.59283 1.22011 0.95894 0.82015 1.01011 1.22734 0.95331 1.01457 0.89532 0.91771 0.77468 0.93452 0.89171 0.94712 0.89491 0.88839 0.90601 0.85927 0.86004 0.76721 0.77229 0.89873 0.89913 0.95475 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 8 H 0.10 2.87 7.16 -52.49 -0.38 2.50 16 9 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.44 9.84 7.44 -10.99 -0.08 9.76 16 11 O -0.58 -14.48 13.91 5.54 0.08 -14.40 16 12 C 0.05 0.78 5.45 -4.97 -0.03 0.75 16 13 N -0.51 -7.96 4.37 -235.45 -1.03 -8.99 16 14 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 15 C 0.12 1.52 6.60 -3.60 -0.02 1.49 16 16 N -0.62 -7.55 3.00 -172.18 -0.52 -8.07 16 17 C 0.51 6.72 7.70 -10.99 -0.08 6.64 16 18 O -0.50 -8.91 13.63 -18.96 -0.26 -9.16 16 19 C -0.17 -1.39 4.55 -29.04 -0.13 -1.52 16 20 C 0.52 5.36 8.09 -10.98 -0.09 5.28 16 21 N -0.86 -4.78 8.87 31.22 0.28 -4.51 16 22 O -0.50 -8.12 15.02 -18.96 -0.28 -8.40 16 23 C 0.11 1.27 6.53 -3.36 -0.02 1.25 16 24 C 0.04 0.54 5.27 -3.46 -0.02 0.52 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 27 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 28 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.99 7.99 -51.93 -0.41 0.58 16 31 H 0.09 1.21 7.06 -51.93 -0.37 0.84 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.12 0.65 7.99 -51.93 -0.41 0.24 16 34 H 0.12 0.69 7.67 -51.93 -0.40 0.29 16 35 H 0.40 1.99 8.93 -40.82 -0.36 1.63 16 36 H 0.40 0.84 8.83 -40.82 -0.36 0.48 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.64 6.02 -51.93 -0.31 0.32 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.12 1.98 5.76 -51.93 -0.30 1.68 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -36.54 332.73 -7.11 -43.64 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.29 Total: 9.46 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: -0.74 Total: 16.95 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.60 Total: -58.53 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.47 Total: -31.97 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.54 -7.11 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112734752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.789 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds