Wall clock time and date at job start Fri Apr 10 2020 17:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47151 * 2 1 4 4 C 1.53001 * 109.47355 * 119.99882 * 2 1 3 5 5 N 1.46898 * 109.46949 * 64.99729 * 4 2 1 6 6 C 1.48562 * 111.00077 * 170.00065 * 5 4 2 7 7 C 1.54379 * 104.69842 * 201.02102 * 6 5 4 8 8 H 1.08994 * 117.60333 * 244.65433 * 7 6 5 9 9 C 1.54260 * 105.06282 * 23.79326 * 7 6 5 10 10 H 1.08992 * 121.78939 * 223.00695 * 9 7 6 11 11 C 1.48676 * 111.10990 * 54.58350 * 5 4 2 12 12 C 1.52997 * 118.12765 * 87.17276 * 7 6 5 13 13 H 1.08998 * 117.44609 * 15.97465 * 12 7 6 14 14 N 1.46502 * 117.44553 * 160.68543 * 12 7 6 15 15 C 1.34781 * 120.00093 * 205.00126 * 14 12 7 16 16 O 1.21278 * 119.99677 * 359.97438 * 15 14 12 17 17 C 1.50696 * 119.99884 * 179.97438 * 15 14 12 18 18 S 1.80997 * 109.47079 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00079 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00014 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00204 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99633 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00234 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47242 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47386 * 119.99842 * 23 21 19 26 26 H 1.48506 * 109.47358 * 239.99306 * 23 21 19 27 27 H 1.08998 * 109.46978 * 59.99819 * 1 2 3 28 28 H 1.08997 * 109.46984 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46968 * 300.00108 * 1 2 3 30 30 H 1.08998 * 109.46856 * 239.99698 * 2 1 3 31 31 H 1.09001 * 109.46851 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46898 * 300.00158 * 3 2 1 33 33 H 1.08996 * 109.47192 * 59.99647 * 3 2 1 34 34 H 1.09005 * 109.46894 * 305.00405 * 4 2 1 35 35 H 1.08994 * 109.47161 * 185.00021 * 4 2 1 36 36 H 1.09002 * 110.41176 * 82.18197 * 6 5 4 37 37 H 1.09002 * 110.41204 * 319.86103 * 6 5 4 38 38 H 1.09005 * 110.30200 * 40.13251 * 11 5 4 39 39 H 1.08998 * 110.44307 * 277.74157 * 11 5 4 40 40 H 0.97002 * 119.99725 * 24.99658 * 14 12 7 41 41 H 1.09005 * 109.47288 * 299.99774 * 17 15 14 42 42 H 1.09000 * 109.47104 * 60.00083 * 17 15 14 43 43 H 0.97003 * 119.99906 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6514 -2.1366 1.1904 6 6 2.3270 -2.9190 2.2574 7 6 2.2759 -4.3807 1.7633 8 1 1.6914 -5.0912 2.3477 9 6 2.1372 -4.2810 0.2302 10 1 1.4495 -4.9173 -0.3267 11 6 2.1162 -2.7675 -0.0731 12 6 3.4025 -4.8743 0.8533 13 1 4.3121 -4.2754 0.8099 14 7 3.5949 -6.3223 0.7416 15 6 4.8021 -6.8177 0.4041 16 8 5.7289 -6.0646 0.1923 17 6 5.0002 -8.3072 0.2898 18 16 6.7146 -8.6539 -0.1754 19 6 6.6651 -10.4141 -0.2367 20 1 5.7458 -10.9364 -0.0167 21 6 7.8078 -11.1295 -0.5667 22 7 8.9284 -10.4929 -0.8343 23 14 7.7554 -12.9956 -0.6309 24 1 6.3880 -13.4645 -0.2908 25 1 8.1106 -13.4541 -1.9980 26 1 8.7262 -13.5521 0.3455 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 1.7905 -2.8177 3.2008 37 1 3.3606 -2.5923 2.3719 38 1 3.1168 -2.4164 -0.3254 39 1 1.4209 -2.5520 -0.8844 40 1 2.8535 -6.9245 0.9107 41 1 4.7813 -8.7775 1.2485 42 1 4.3298 -8.7055 -0.4718 43 1 9.7270 -10.9928 -1.0653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113898741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:25 Heat of formation + Delta-G solvation = -33.260294 kcal Electronic energy + Delta-G solvation = -21173.087021 eV Core-core repulsion = 17958.048216 eV Total energy + Delta-G solvation = -3215.038805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46265 -40.18838 -37.61492 -35.29413 -34.59053 -33.18644 -30.62421 -29.49713 -27.92316 -27.72606 -27.23144 -23.70499 -22.13099 -21.92791 -21.48591 -20.22807 -19.83030 -18.08145 -17.87787 -16.89431 -16.88492 -16.44517 -16.33682 -15.88528 -15.37620 -15.11723 -14.76290 -14.56540 -14.40288 -14.02973 -13.85272 -13.77102 -13.34271 -13.17612 -13.16899 -12.92105 -12.83315 -12.62296 -12.57323 -12.49004 -11.97768 -11.84915 -11.73196 -11.59709 -11.41913 -11.16469 -11.10259 -10.97932 -10.28807 -9.83800 -9.46700 -8.68034 -8.35595 -6.13825 1.23511 1.41355 1.44865 1.47199 1.56889 2.06753 2.26385 2.64152 2.95715 2.98792 3.28760 3.57611 3.64178 3.77310 3.86836 3.89339 4.02937 4.15570 4.24041 4.27965 4.28721 4.45647 4.48644 4.51408 4.67072 4.71416 4.77907 4.78876 4.85613 4.87997 5.03701 5.07348 5.11918 5.14629 5.27153 5.41825 5.42422 5.45432 5.50388 5.75965 6.01843 6.19551 6.42048 7.05916 7.16676 8.73882 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.002234 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.246514 B =12531.916844 C =12771.870300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.145 4.145 4 C 0.048 3.952 5 N -0.506 5.506 6 C 0.060 3.940 7 C -0.152 4.152 8 H 0.139 0.861 9 C -0.166 4.166 10 H 0.132 0.868 11 C 0.064 3.936 12 C 0.097 3.903 13 H 0.105 0.895 14 N -0.682 5.682 15 C 0.539 3.461 16 O -0.564 6.564 17 C -0.128 4.128 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.029 0.971 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.097 0.903 40 H 0.420 0.580 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.991 18.033 4.995 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.080 4.080 5 N -0.230 5.230 6 C -0.068 4.068 7 C -0.172 4.172 8 H 0.157 0.843 9 C -0.187 4.187 10 H 0.150 0.850 11 C -0.064 4.064 12 C -0.011 4.011 13 H 0.123 0.877 14 N -0.334 5.334 15 C 0.326 3.674 16 O -0.441 6.441 17 C -0.279 4.279 18 S 0.075 5.925 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.257 0.743 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.881 19.282 4.664 28.086 hybrid contribution 0.093 -2.015 0.057 2.018 sum -19.788 17.267 4.722 26.684 Atomic orbital electron populations 1.21689 0.94012 1.02015 1.01418 1.21190 0.97153 0.96235 0.97020 1.21805 1.00730 0.95293 1.02497 1.22421 0.97765 0.88075 0.99702 1.65653 1.53260 1.02315 1.01786 1.22685 0.97529 0.90053 0.96485 1.23940 1.01290 0.98394 0.93547 0.84289 1.24014 1.00470 0.97207 0.96998 0.85005 1.22632 0.99014 0.90728 0.94047 1.21625 0.94050 0.81762 1.03619 0.87731 1.45004 1.11738 1.06431 1.70233 1.20110 0.82427 0.89771 0.75104 1.90690 1.42498 1.60781 1.50150 1.23354 1.03020 0.94785 1.06734 1.85611 1.08090 1.08185 1.90594 1.23237 1.00213 0.91209 1.54583 0.89765 1.26153 0.93963 1.05379 0.93822 1.70195 1.01504 1.38282 1.44833 0.84884 0.79015 0.75807 0.78103 1.17942 1.19962 1.19975 0.92820 0.92481 0.92669 0.91766 0.93105 0.91943 0.91984 0.89687 0.95235 0.87824 0.94145 0.94556 0.88460 0.74268 0.86876 0.86903 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.08 71.98 0.65 -0.98 16 2 C -0.10 -1.27 2.66 -10.79 -0.03 -1.30 16 3 C -0.15 -1.63 9.19 71.98 0.66 -0.97 16 4 C 0.05 0.70 4.45 86.30 0.38 1.08 16 5 N -0.51 -8.15 4.94 -881.17 -4.36 -12.51 16 6 C 0.06 0.97 6.29 86.45 0.54 1.52 16 7 C -0.15 -2.57 7.05 -9.90 -0.07 -2.63 16 8 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 9 C -0.17 -3.03 7.05 -9.90 -0.07 -3.10 16 10 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 11 C 0.06 1.11 4.91 86.43 0.42 1.54 16 12 C 0.10 2.28 5.98 44.99 0.27 2.55 16 13 H 0.10 3.11 7.40 -2.39 -0.02 3.10 16 14 N -0.68 -17.29 5.56 -442.53 -2.46 -19.75 16 15 C 0.54 19.86 7.85 87.66 0.69 20.54 16 16 O -0.56 -26.30 15.43 -3.02 -0.05 -26.35 16 17 C -0.13 -4.98 6.16 71.23 0.44 -4.54 16 18 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 19 C -0.54 -30.94 9.50 67.95 0.65 -30.29 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.65 5.49 84.86 0.47 1.12 16 22 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 23 Si 1.00 43.46 29.55 68.60 2.03 45.48 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.81 7.75 -2.39 -0.02 0.79 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.94 6.57 -2.39 -0.02 0.92 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.03 0.48 7.88 -2.39 -0.02 0.46 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 0.73 7.82 -2.39 -0.02 0.72 16 38 H 0.04 0.73 7.99 -2.38 -0.02 0.71 16 39 H 0.10 1.53 7.57 -2.39 -0.02 1.51 16 40 H 0.42 7.50 8.83 -92.71 -0.82 6.68 16 41 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 42 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.63 363.75 -0.54 -74.16 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.17 Total: 19.72 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 5.01 Total: -15.47 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -6.53 Total: -87.97 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -73.63 -0.54 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113898741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.903 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds