Wall clock time and date at job start Fri Apr 10 2020 17:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53002 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47088 * 65.00309 * 4 3 2 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 3 7 7 C 1.50699 * 109.47106 * 270.00004 * 6 5 4 8 8 H 1.07999 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99839 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00004 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47213 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47238 * 119.99905 * 11 9 7 14 14 H 1.48504 * 109.47206 * 239.99759 * 11 9 7 15 15 C 1.34777 * 120.00199 * 89.99979 * 5 4 3 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 5 4 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 C 1.33888 * 122.76328 * 269.70747 * 18 17 15 20 20 O 1.21224 * 125.39088 * 359.97438 * 19 18 17 21 21 C 1.51313 * 109.20702 * 179.84364 * 19 18 17 22 22 C 1.54234 * 103.55748 * 0.38581 * 21 19 18 23 23 C 1.33875 * 122.76687 * 89.99726 * 18 17 15 24 24 O 1.21231 * 125.39728 * 359.97438 * 23 18 17 25 25 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 26 26 H 1.08997 * 109.47178 * 59.99650 * 1 2 3 27 27 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46877 * 60.00239 * 3 2 1 29 29 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 30 30 H 1.09001 * 109.46980 * 304.99872 * 4 3 2 31 31 H 1.09005 * 109.46685 * 184.99965 * 4 3 2 32 32 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 33 33 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 34 34 H 0.96999 * 119.99754 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 37 37 H 1.08996 * 110.79584 * 241.77478 * 21 19 18 38 38 H 1.09001 * 110.54482 * 118.87686 * 21 19 18 39 39 H 1.08998 * 110.60543 * 241.26221 * 22 21 19 40 40 H 1.08996 * 110.60379 * 118.29283 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2196 -0.5460 -0.6538 9 6 5.8606 -2.6289 -0.9527 10 7 4.9854 -3.5444 -1.3067 11 14 7.5905 -3.1318 -0.4590 12 1 8.3760 -1.9220 -0.1060 13 1 7.5261 -4.0404 0.7139 14 1 8.2448 -3.8329 -1.5928 15 6 4.2615 1.3338 -2.3218 16 8 4.1539 2.5395 -2.2474 17 6 4.7084 0.6953 -3.6117 18 7 4.9486 1.7362 -4.6141 19 6 3.9965 2.1723 -5.4483 20 8 2.8524 1.7729 -5.4781 21 6 4.5741 3.2450 -6.3457 22 6 6.0432 3.3474 -5.8874 23 6 6.1397 2.3257 -4.7754 24 8 7.1376 2.0802 -4.1321 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9786 2.1765 0.0889 32 1 3.3853 -1.3629 -0.6734 33 1 3.9120 -1.2114 -2.3668 34 1 5.2383 -4.4809 -1.3118 35 1 5.6283 0.1362 -3.4408 36 1 3.9329 0.0182 -3.9696 37 1 4.0586 4.1937 -6.1961 38 1 4.5186 2.9403 -7.3908 39 1 6.2585 4.3469 -5.5097 40 1 6.7184 3.0909 -6.7037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123615273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:38 Heat of formation + Delta-G solvation = -163.911547 kcal Electronic energy + Delta-G solvation = -25289.665425 eV Core-core repulsion = 21490.375190 eV Total energy + Delta-G solvation = -3799.290234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.94335 -40.76119 -39.63895 -38.77111 -36.95897 -36.72197 -34.69045 -34.37170 -31.69127 -29.28676 -28.59086 -27.09822 -27.06217 -24.93199 -24.05917 -23.29307 -21.15738 -19.99151 -18.82383 -18.63391 -18.26603 -17.67404 -17.51495 -17.28931 -17.02643 -16.61804 -16.19191 -16.13177 -15.67484 -15.42964 -15.27359 -14.93725 -14.78901 -14.39615 -14.24191 -13.69106 -13.61026 -13.49950 -13.34738 -13.03508 -12.84928 -12.78712 -12.65849 -12.21319 -12.07481 -12.00609 -11.73811 -11.71152 -11.54704 -11.09990 -10.74645 -10.67789 -10.47379 -9.59197 -8.23466 -6.38740 0.51550 1.33146 1.37576 1.39979 1.47849 1.53404 1.73811 2.25910 2.41310 2.87531 3.06459 3.23229 3.27071 3.53567 3.67415 3.95104 4.07804 4.12026 4.19548 4.23973 4.30320 4.31732 4.47939 4.50988 4.54718 4.75705 4.80501 4.81225 4.90460 4.93082 4.93165 5.23291 5.57472 5.74976 5.82465 6.00876 6.21624 6.34371 6.43395 6.69320 6.74867 7.08090 7.33452 8.82700 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.006506 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.823092 B = 4302.708494 C = 6129.397361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.058 3.942 4 C 0.116 3.884 5 N -0.585 5.585 6 C 0.257 3.743 7 C -0.551 4.551 8 H 0.050 0.950 9 C 0.024 3.976 10 N -0.916 5.916 11 Si 0.957 3.043 12 H -0.274 1.274 13 H -0.274 1.274 14 H -0.276 1.276 15 C 0.503 3.497 16 O -0.586 6.586 17 C 0.087 3.913 18 N -0.567 5.567 19 C 0.517 3.483 20 O -0.528 6.528 21 C -0.133 4.133 22 C -0.133 4.133 23 C 0.514 3.486 24 O -0.527 6.527 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.020 0.980 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 12.931 -8.228 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.020 4.020 4 C -0.007 4.007 5 N -0.315 5.315 6 C 0.137 3.863 7 C -0.590 4.590 8 H 0.068 0.932 9 C -0.177 4.177 10 N -0.555 5.555 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.199 1.199 14 H -0.201 1.201 15 C 0.290 3.710 16 O -0.469 6.469 17 C -0.038 4.038 18 N -0.309 5.309 19 C 0.310 3.690 20 O -0.403 6.403 21 C -0.172 4.172 22 C -0.172 4.172 23 C 0.306 3.694 24 O -0.402 6.402 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.164 0.836 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.215 12.804 -7.851 15.359 hybrid contribution 0.454 -0.892 0.815 1.291 sum -2.761 11.911 -7.036 14.107 Atomic orbital electron populations 1.22882 0.79871 1.03465 1.00611 1.88000 1.21293 1.28145 1.95480 1.22900 0.93351 0.84860 1.00859 1.21555 0.93084 0.99471 0.86612 1.48116 1.63123 1.09151 1.11082 1.19115 0.96177 0.73852 0.97197 1.21696 0.97778 0.92643 1.46862 0.93160 1.25643 1.01102 0.96244 0.94713 1.70033 1.35995 1.01590 1.47892 0.85530 0.79831 0.78177 0.78293 1.19875 1.19903 1.20109 1.20773 0.77026 0.86866 0.86305 1.90546 1.56561 1.14847 1.84936 1.21380 1.05070 0.90434 0.86933 1.46764 1.14725 1.36806 1.32610 1.22013 0.83854 0.82869 0.80300 1.90733 1.18518 1.60853 1.70148 1.22601 0.94631 0.98454 1.01472 1.22608 0.98571 0.99493 0.96499 1.22076 0.80528 0.81830 0.84943 1.90767 1.33618 1.65040 1.50740 0.92120 0.94239 0.89109 0.89551 0.94585 0.89621 0.88869 0.94723 0.96158 0.92194 0.86697 0.86755 0.83639 0.82420 0.83757 0.82503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.20 9.53 -148.98 -1.42 -16.62 16 3 C 0.06 1.95 6.28 71.98 0.45 2.41 16 4 C 0.12 4.51 5.81 86.38 0.50 5.01 16 5 N -0.59 -26.68 2.42 -826.14 -2.00 -28.68 16 6 C 0.26 13.18 4.79 85.63 0.41 13.59 16 7 C -0.55 -30.26 9.30 25.60 0.24 -30.02 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.02 1.30 5.46 84.66 0.46 1.76 16 10 N -0.92 -52.21 13.29 21.45 0.28 -51.93 16 11 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.50 22.76 7.74 87.66 0.68 23.44 16 16 O -0.59 -27.28 16.01 -3.04 -0.05 -27.32 16 17 C 0.09 3.61 4.59 85.64 0.39 4.00 16 18 N -0.57 -19.12 2.04 -760.73 -1.55 -20.67 16 19 C 0.52 14.89 8.08 87.99 0.71 15.60 16 20 O -0.53 -19.30 17.47 -2.86 -0.05 -19.35 16 21 C -0.13 -1.72 7.03 30.46 0.21 -1.51 16 22 C -0.13 -1.80 7.03 30.46 0.21 -1.59 16 23 C 0.51 15.46 8.07 87.99 0.71 16.17 16 24 O -0.53 -20.73 17.48 -2.88 -0.05 -20.78 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 3.37 8.07 -2.39 -0.02 3.35 16 31 H 0.09 3.47 7.42 -2.38 -0.02 3.45 16 32 H 0.03 1.91 7.11 -2.39 -0.02 1.89 16 33 H 0.02 1.09 6.43 -2.39 -0.02 1.07 16 34 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.12 5.14 7.71 -2.38 -0.02 5.12 16 36 H 0.11 4.73 7.08 -2.39 -0.02 4.71 16 37 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.16 1.04 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -79.29 347.52 4.47 -74.82 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.05 Total: 13.97 kcal Atomic # 6 Polarization: 44.63 SS G_CDS: 6.23 Total: 50.87 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.27 Total: -101.28 kcal Atomic # 8 Polarization: -82.50 SS G_CDS: -1.57 Total: -84.07 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -79.29 4.47 -74.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123615273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.096 kcal (2) G-P(sol) polarization free energy of solvation -79.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds