Wall clock time and date at job start Fri Apr 10 2020 17:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00026 * 2 1 4 4 H 1.48495 * 109.46940 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46845 * 299.99794 * 3 2 1 6 6 H 1.48499 * 109.47122 * 59.99979 * 3 2 1 7 7 C 1.38811 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99391 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99515 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47114 * 174.97119 * 10 9 7 12 12 N 1.46498 * 110.43240 * 307.72769 * 11 10 9 13 13 C 1.34778 * 120.00084 * 302.03790 * 12 11 10 14 14 O 1.21279 * 120.00318 * 354.81277 * 13 12 11 15 15 C 1.50704 * 120.00137 * 174.81516 * 13 12 11 16 16 C 1.52999 * 109.47181 * 179.97438 * 15 13 12 17 17 N 1.46502 * 109.47187 * 179.97438 * 16 15 13 18 18 C 1.34769 * 120.00408 * 179.97438 * 17 16 15 19 19 N 1.34775 * 120.00441 * 180.02562 * 18 17 16 20 20 O 1.21594 * 119.99463 * 0.02562 * 18 17 16 21 21 C 1.54889 * 110.60225 * 70.34586 * 11 10 9 22 22 C 1.54886 * 102.75052 * 156.67731 * 21 11 10 23 23 C 1.54262 * 104.19540 * 322.06202 * 22 21 11 24 24 C 1.53872 * 106.60113 * 23.60785 * 23 22 21 25 25 H 0.97009 * 119.99722 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00086 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47788 * 54.96752 * 10 9 7 28 28 H 1.09001 * 109.47397 * 294.96685 * 10 9 7 29 29 H 0.97001 * 120.00184 * 122.03177 * 12 11 10 30 30 H 1.08993 * 109.47480 * 59.99415 * 15 13 12 31 31 H 1.08998 * 109.46937 * 299.99633 * 15 13 12 32 32 H 1.08998 * 109.46964 * 299.99713 * 16 15 13 33 33 H 1.09003 * 109.47088 * 59.99957 * 16 15 13 34 34 H 0.97002 * 119.99799 * 0.02562 * 17 16 15 35 35 H 0.96998 * 119.99563 * 0.02562 * 19 18 17 36 36 H 0.97003 * 120.00052 * 180.02562 * 19 18 17 37 37 H 1.08998 * 110.75515 * 274.99457 * 21 11 10 38 38 H 1.08998 * 110.75331 * 38.35858 * 21 11 10 39 39 H 1.08998 * 110.48804 * 203.37649 * 22 21 11 40 40 H 1.09006 * 110.48544 * 80.73466 * 22 21 11 41 41 H 1.09000 * 110.02926 * 264.32244 * 23 22 21 42 42 H 1.09000 * 110.03505 * 142.89750 * 23 22 21 43 43 H 1.09010 * 110.03033 * 240.71847 * 24 23 22 44 44 H 1.08997 * 110.03010 * 119.28870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0686 -4.8169 0.1270 12 7 0.1827 -4.6107 1.2754 13 6 0.7029 -4.4648 2.5102 14 8 1.8956 -4.5978 2.6853 15 6 -0.1975 -4.1366 3.6732 16 6 0.6382 -4.0273 4.9502 17 7 -0.2369 -3.7076 6.0807 18 6 0.2831 -3.5627 7.3156 19 7 -0.5221 -3.2691 8.3557 20 8 1.4787 -3.6968 7.4912 21 6 0.2424 -4.9728 -1.1738 22 6 -0.2080 -6.4537 -1.1173 23 6 1.0099 -7.1974 -0.5314 24 6 1.8216 -6.1567 0.2598 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.7506 -3.6765 0.8420 28 1 2.6154 -3.7545 -0.9311 29 1 -0.7783 -4.5790 1.1472 30 1 -0.9401 -4.9255 3.7919 31 1 -0.7015 -3.1884 3.4862 32 1 1.1419 -4.9757 5.1370 33 1 1.3811 -3.2384 4.8318 34 1 -1.1908 -3.6010 5.9406 35 1 -1.4760 -3.1625 8.2156 36 1 -0.1477 -3.1644 9.2444 37 1 -0.6200 -4.3062 -1.1659 38 1 0.8642 -4.7913 -2.0504 39 1 -0.4348 -6.8219 -2.1178 40 1 -1.0733 -6.5646 -0.4638 41 1 1.6173 -7.6113 -1.3363 42 1 0.6765 -7.9945 0.1330 43 1 2.8229 -6.0655 -0.1612 44 1 1.8820 -6.4488 1.3081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753510363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:45 Heat of formation + Delta-G solvation = -69.921147 kcal Electronic energy + Delta-G solvation = -25071.932323 eV Core-core repulsion = 21444.843664 eV Total energy + Delta-G solvation = -3627.088659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14689 -39.68121 -37.63075 -35.01256 -34.29686 -33.69690 -33.02438 -31.19677 -30.24010 -28.59513 -28.00260 -24.56651 -23.92190 -22.17031 -21.18526 -20.61816 -20.22019 -18.94083 -18.34920 -17.32963 -17.05674 -16.65741 -15.86827 -15.83857 -15.06535 -14.70669 -14.61036 -14.56696 -14.15962 -14.03102 -13.41113 -13.24246 -13.09573 -12.82347 -12.58446 -12.05840 -11.78392 -11.54546 -11.28120 -11.21258 -11.04891 -10.89337 -10.81229 -10.67993 -10.38745 -10.33555 -10.29420 -9.97045 -9.79603 -9.66892 -9.30646 -9.01333 -8.77378 -8.49687 -6.82851 -5.72875 -2.98358 2.77797 3.09622 3.20573 3.46492 3.53109 3.55293 3.64183 4.41955 4.61604 4.74248 4.83321 4.85240 5.00505 5.17116 5.19519 5.53632 5.55474 5.63543 5.65055 5.71310 5.78109 5.94220 5.98632 6.02086 6.03658 6.11580 6.21670 6.33834 6.38396 6.43035 6.45003 6.59155 6.63124 6.64421 6.81013 6.96109 7.16893 7.77615 7.88351 7.95815 8.47264 8.58359 8.69691 9.59142 10.17043 10.53316 11.50489 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.008630 B = 0.005459 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.902807 B = 5127.714824 C = 7675.710424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.145 3.855 11 C 0.170 3.830 12 N -0.707 5.707 13 C 0.529 3.471 14 O -0.531 6.531 15 C -0.154 4.154 16 C 0.154 3.846 17 N -0.744 5.744 18 C 0.704 3.296 19 N -0.871 5.871 20 O -0.591 6.591 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.252 0.748 26 H 0.381 0.619 27 H 0.045 0.955 28 H 0.020 0.980 29 H 0.395 0.605 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.395 0.605 35 H 0.395 0.605 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -13.628 6.929 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.358 4.358 8 H 0.087 0.913 9 N -0.368 5.368 10 C 0.016 3.984 11 C 0.084 3.916 12 N -0.358 5.358 13 C 0.315 3.685 14 O -0.407 6.407 15 C -0.194 4.194 16 C 0.030 3.970 17 N -0.401 5.401 18 C 0.402 3.598 19 N -0.439 5.439 20 O -0.469 6.469 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.163 4.163 25 H 0.061 0.939 26 H 0.215 0.785 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.229 0.771 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.223 0.777 36 H 0.245 0.755 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.367 -13.752 7.003 16.694 hybrid contribution -1.250 1.296 0.132 1.805 sum -7.616 -12.456 7.135 16.250 Atomic orbital electron populations 1.69656 1.04996 1.25208 1.58911 1.24650 0.95504 0.97429 1.03551 0.86150 0.78963 0.84330 0.77042 1.20598 1.22026 1.22022 1.19301 0.91091 0.84211 1.41215 0.91325 1.42194 1.05592 0.99724 1.89334 1.21065 0.93526 0.85050 0.98718 1.21349 0.90607 0.94933 0.84679 1.45761 1.09728 1.73940 1.06412 1.19956 0.88697 0.76238 0.83649 1.90696 1.15778 1.49670 1.84573 1.21787 0.99347 1.04505 0.93777 1.20895 0.91663 1.02691 0.81785 1.45090 1.11248 1.76815 1.06926 1.15948 0.85257 0.77834 0.80804 1.42984 1.10963 1.79390 1.10549 1.90999 1.13603 1.58144 1.84150 1.22728 1.00230 0.95709 0.97034 1.22396 0.97703 0.95692 1.00435 1.22136 0.96794 0.97937 0.99148 1.22449 0.98947 0.93700 1.01228 0.93852 0.78512 0.93705 0.96242 0.77131 0.89025 0.87823 0.90846 0.90260 0.77175 0.77721 0.75522 0.90648 0.89863 0.91855 0.91991 0.92111 0.92430 0.91100 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.90 22.95 29.55 -169.99 -5.02 17.92 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.23 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -18.11 5.31 -59.91 -0.32 -18.43 16 10 C 0.14 3.05 4.74 -4.04 -0.02 3.03 16 11 C 0.17 2.72 0.40 -130.16 -0.05 2.67 16 12 N -0.71 -10.43 4.54 -46.07 -0.21 -10.64 16 13 C 0.53 8.57 7.07 -10.98 -0.08 8.49 16 14 O -0.53 -10.64 12.93 5.56 0.07 -10.57 16 15 C -0.15 -1.87 5.82 -27.88 -0.16 -2.03 16 16 C 0.15 2.18 4.96 -4.04 -0.02 2.16 16 17 N -0.74 -8.38 5.56 -65.23 -0.36 -8.74 16 18 C 0.70 9.34 8.84 -86.93 -0.77 8.57 16 19 N -0.87 -6.98 8.88 27.63 0.25 -6.74 16 20 O -0.59 -11.04 17.18 5.28 0.09 -10.95 16 21 C -0.12 -1.66 5.66 -24.74 -0.14 -1.80 16 22 C -0.12 -1.37 6.79 -25.08 -0.17 -1.54 16 23 C -0.12 -1.40 6.80 -25.62 -0.17 -1.57 16 24 C -0.12 -1.79 5.67 -25.62 -0.15 -1.94 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 26 H 0.38 9.68 7.27 -40.82 -0.30 9.38 16 27 H 0.05 1.07 6.54 -51.93 -0.34 0.73 16 28 H 0.02 0.42 8.02 -51.93 -0.42 0.00 16 29 H 0.40 4.81 8.49 -40.82 -0.35 4.47 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.39 2.97 8.49 -40.82 -0.35 2.62 16 35 H 0.40 1.80 8.84 -40.82 -0.36 1.44 16 36 H 0.41 2.92 8.93 -40.82 -0.36 2.55 16 37 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 38 H 0.08 1.22 7.97 -51.93 -0.41 0.80 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.04 7.84 -51.92 -0.41 0.64 16 44 H 0.07 1.17 6.55 -51.93 -0.34 0.83 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -37.08 358.80 -8.33 -45.41 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -6.98 Total: 15.59 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -1.98 Total: 8.87 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: 0.08 Total: -71.68 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.16 Total: -21.52 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.08 -8.33 -45.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753510363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.513 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds