Wall clock time and date at job start Fri Apr 10 2020 17:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.53005 * 109.47115 * 119.99178 * 2 1 3 5 5 H 1.09000 * 109.46817 * 300.00828 * 4 2 1 6 6 C 1.52998 * 109.46765 * 60.00139 * 4 2 1 7 7 N 1.46505 * 109.46996 * 175.00147 * 6 4 2 8 8 C 1.34776 * 120.00046 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99806 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00002 * 179.97438 * 8 7 6 11 11 H 1.09001 * 110.48888 * 321.24947 * 10 8 7 12 12 C 1.54101 * 110.46101 * 84.15598 * 10 8 7 13 13 N 1.47058 * 103.85831 * 118.92570 * 12 10 8 14 14 C 1.46506 * 125.40668 * 179.87175 * 13 12 10 15 15 C 1.33950 * 109.18112 * 359.60603 * 13 12 10 16 16 O 1.21579 * 123.04070 * 180.23715 * 15 13 12 17 17 N 1.33947 * 113.91524 * 0.26300 * 15 13 12 18 18 N 1.46492 * 109.47108 * 180.02562 * 4 2 1 19 19 C 1.36937 * 119.99869 * 85.00479 * 18 4 2 20 20 H 1.08001 * 120.00384 * 359.97438 * 19 18 4 21 21 C 1.38812 * 120.00121 * 179.97438 * 19 18 4 22 22 N 1.31618 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00353 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46606 * 59.99506 * 23 21 19 25 25 H 1.48493 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46646 * 299.99990 * 23 21 19 27 27 H 1.09001 * 109.47474 * 300.00469 * 1 2 3 28 28 H 1.09004 * 109.47155 * 60.00762 * 1 2 3 29 29 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47297 * 239.99201 * 2 1 3 31 31 H 1.09003 * 109.46894 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46596 * 299.99581 * 3 2 1 33 33 H 1.08994 * 109.47800 * 59.99509 * 3 2 1 34 34 H 1.09000 * 109.47209 * 55.00333 * 6 4 2 35 35 H 1.09004 * 109.47686 * 294.99946 * 6 4 2 36 36 H 0.96999 * 119.99726 * 359.97438 * 7 6 4 37 37 H 1.09003 * 110.66161 * 0.28119 * 12 10 8 38 38 H 1.08993 * 110.44048 * 237.46387 * 12 10 8 39 39 H 1.09001 * 109.47060 * 179.72414 * 14 13 12 40 40 H 1.09004 * 109.47073 * 299.71903 * 14 13 12 41 41 H 1.09000 * 109.47212 * 59.71985 * 14 13 12 42 42 H 0.96996 * 125.41041 * 179.97438 * 17 15 13 43 43 H 0.96998 * 120.00191 * 265.00194 * 18 4 2 44 44 H 0.96998 * 119.99893 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6765 -0.2072 2.1393 6 6 1.5300 -2.1636 1.2495 7 7 2.1141 -2.8879 2.3811 8 6 1.8060 -4.1844 2.5826 9 8 1.0456 -4.7515 1.8270 10 6 2.4073 -4.9297 3.7463 11 1 3.4468 -4.6356 3.8917 12 6 1.5857 -4.6831 5.0265 13 7 1.1166 -6.0237 5.4077 14 6 0.2862 -6.3324 6.5745 15 6 1.5642 -6.9168 4.5154 16 8 1.3195 -8.1056 4.5874 17 7 2.3062 -6.3818 3.5369 18 7 3.5049 -0.7206 1.2497 19 6 4.1891 0.3545 1.7511 20 1 3.6487 1.2021 2.1460 21 6 5.5772 0.3548 1.7519 22 7 6.2358 -0.6784 1.2712 23 14 6.5106 1.8216 2.4353 24 1 6.1508 2.0156 3.8630 25 1 7.9706 1.5756 2.3221 26 1 6.1520 3.0392 1.6645 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8898 34 1 1.8184 -2.6510 0.3182 35 1 0.4436 -2.1650 1.3390 36 1 2.7232 -2.4346 2.9847 37 1 0.7405 -4.0262 4.8205 38 1 2.2171 -4.2620 5.8088 39 1 0.0880 -7.4038 6.6062 40 1 0.8097 -6.0328 7.4825 41 1 -0.6568 -5.7904 6.5031 42 1 2.7126 -6.8740 2.8066 43 1 3.9903 -1.4817 0.8948 44 1 7.2058 -0.6783 1.2721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753834864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:49 Heat of formation + Delta-G solvation = -42.344910 kcal Electronic energy + Delta-G solvation = -24946.464753 eV Core-core repulsion = 21320.571890 eV Total energy + Delta-G solvation = -3625.892864 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38311 -39.23570 -37.36142 -36.21624 -34.23316 -33.98537 -33.20251 -30.62785 -29.72094 -28.12631 -27.13019 -26.14752 -24.33993 -23.39686 -21.85588 -20.64357 -20.41329 -19.39832 -17.93588 -17.65390 -17.12888 -16.46442 -15.86507 -15.47180 -15.27980 -14.84375 -14.38387 -14.17140 -14.03556 -13.87153 -13.62288 -13.54672 -13.38670 -12.89653 -12.74173 -12.48012 -12.33425 -12.10178 -12.02191 -11.69198 -11.13664 -11.02454 -10.89142 -10.72825 -10.37782 -10.35715 -10.20003 -10.12330 -10.02167 -9.62322 -9.28968 -9.00679 -8.78903 -8.72106 -7.12426 -5.90458 -3.20148 2.33880 2.70263 2.94286 3.30624 3.33765 3.39584 3.40980 3.84165 4.16820 4.46137 4.62943 4.69347 4.94721 5.15170 5.22329 5.25187 5.29220 5.39707 5.44902 5.51385 5.56100 5.67147 5.73714 5.80834 5.91526 6.10332 6.16680 6.30376 6.36193 6.45412 6.49766 6.54953 6.57514 6.79100 6.99283 7.00247 7.22958 7.32847 7.58222 7.72117 8.26586 8.32722 8.50584 9.38955 9.92754 10.28666 11.31068 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.003915 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.196387 B = 7149.560595 C = 8264.452050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.113 3.887 7 N -0.704 5.704 8 C 0.499 3.501 9 O -0.536 6.536 10 C 0.103 3.897 11 H 0.120 0.880 12 C 0.108 3.892 13 N -0.638 5.638 14 C 0.120 3.880 15 C 0.706 3.294 16 O -0.588 6.588 17 N -0.713 5.713 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.434 0.566 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -3.404 7.234 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.357 5.357 8 C 0.282 3.718 9 O -0.413 6.413 10 C -0.008 4.008 11 H 0.138 0.862 12 C -0.016 4.016 13 N -0.377 5.377 14 C -0.022 4.022 15 C 0.406 3.594 16 O -0.466 6.466 17 N -0.374 5.374 18 N -0.363 5.363 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.276 0.724 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.340 -4.288 6.968 13.186 hybrid contribution 1.281 0.927 -0.020 1.582 sum -9.059 -3.361 6.948 11.901 Atomic orbital electron populations 1.21946 0.96856 1.00934 1.00983 1.21734 0.93533 0.97833 1.00044 1.21820 1.04214 0.94593 0.99036 1.20545 0.86425 0.90963 0.96091 0.92766 1.21788 0.97328 0.93302 0.88710 1.45984 1.48263 1.10509 1.30901 1.20610 0.82189 0.82637 0.86408 1.90722 1.35848 1.67792 1.46939 1.21882 1.02021 0.83047 0.93808 0.86217 1.22261 0.98621 0.86156 0.94582 1.46987 1.55541 1.07175 1.28036 1.21407 0.93095 1.02931 0.84802 1.15793 0.78574 0.84909 0.80110 1.90941 1.64246 1.13618 1.77833 1.44812 1.56317 1.06501 1.29767 1.42456 0.98686 1.21256 1.73879 1.19143 0.88754 0.96458 1.32702 0.90945 1.24720 0.96464 0.97656 1.01656 1.69641 1.07041 1.29831 1.51156 0.86351 0.79132 0.82392 0.78777 1.21277 1.21792 1.21254 0.93174 0.93538 0.93085 0.91897 0.89484 0.94986 0.94040 0.91760 0.91472 0.75129 0.89599 0.88622 0.89584 0.91988 0.92119 0.72377 0.78109 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.84 37.16 0.33 -1.62 16 2 C -0.11 -1.73 2.69 -90.62 -0.24 -1.98 16 3 C -0.14 -2.36 8.26 37.16 0.31 -2.05 16 4 C 0.17 2.82 2.18 -67.93 -0.15 2.67 16 5 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 6 C 0.11 1.71 4.73 -4.04 -0.02 1.69 16 7 N -0.70 -9.81 5.39 -60.29 -0.32 -10.14 16 8 C 0.50 7.09 6.93 -10.98 -0.08 7.02 16 9 O -0.54 -9.68 16.60 5.56 0.09 -9.59 16 10 C 0.10 1.16 4.18 -68.20 -0.28 0.88 16 11 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 12 C 0.11 1.02 7.31 -3.16 -0.02 1.00 16 13 N -0.64 -7.42 3.36 -186.73 -0.63 -8.04 16 14 C 0.12 1.03 11.21 59.85 0.67 1.70 16 15 C 0.71 10.57 8.60 -88.40 -0.76 9.80 16 16 O -0.59 -10.89 17.29 5.30 0.09 -10.79 16 17 N -0.71 -9.40 5.63 -59.33 -0.33 -9.73 16 18 N -0.72 -14.98 4.44 -53.43 -0.24 -15.21 16 19 C -0.24 -5.64 7.57 -15.06 -0.11 -5.75 16 20 H 0.07 1.67 7.39 -52.49 -0.39 1.28 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -25.27 13.06 55.49 0.72 -24.55 16 23 Si 0.90 20.40 29.55 -169.99 -5.02 15.38 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.76 6.01 -51.93 -0.31 1.45 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 36 H 0.41 5.60 8.14 -40.82 -0.33 5.27 16 37 H 0.09 0.78 7.73 -51.93 -0.40 0.38 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.83 7.52 -51.93 -0.39 0.44 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.43 5.43 8.96 -40.82 -0.37 5.07 16 43 H 0.38 8.85 7.80 -40.82 -0.32 8.53 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -31.74 359.26 -7.66 -39.40 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -6.98 Total: 14.82 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -0.46 Total: 13.05 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -0.80 Total: -67.68 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.18 Total: -20.38 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -7.66 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753834864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.948 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds