Wall clock time and date at job start Fri Apr 10 2020 17:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.53005 * 109.47115 * 119.99178 * 2 1 3 5 5 H 1.09000 * 109.46817 * 300.00828 * 4 2 1 6 6 C 1.52998 * 109.46765 * 60.00139 * 4 2 1 7 7 N 1.46505 * 109.46996 * 175.00147 * 6 4 2 8 8 C 1.34776 * 120.00046 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99806 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00002 * 179.97438 * 8 7 6 11 11 H 1.09001 * 110.48888 * 321.24947 * 10 8 7 12 12 C 1.54101 * 110.46101 * 84.15598 * 10 8 7 13 13 N 1.47058 * 103.85831 * 118.92570 * 12 10 8 14 14 C 1.46506 * 125.40668 * 179.87175 * 13 12 10 15 15 C 1.33950 * 109.18112 * 359.60603 * 13 12 10 16 16 O 1.21579 * 123.04070 * 180.23715 * 15 13 12 17 17 N 1.33947 * 113.91524 * 0.26300 * 15 13 12 18 18 N 1.46492 * 109.47108 * 180.02562 * 4 2 1 19 19 C 1.36937 * 119.99869 * 85.00479 * 18 4 2 20 20 H 1.08001 * 120.00384 * 359.97438 * 19 18 4 21 21 C 1.38812 * 120.00121 * 179.97438 * 19 18 4 22 22 N 1.31618 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00353 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46606 * 59.99506 * 23 21 19 25 25 H 1.48493 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46646 * 299.99990 * 23 21 19 27 27 H 1.09001 * 109.47474 * 300.00469 * 1 2 3 28 28 H 1.09004 * 109.47155 * 60.00762 * 1 2 3 29 29 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47297 * 239.99201 * 2 1 3 31 31 H 1.09003 * 109.46894 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46596 * 299.99581 * 3 2 1 33 33 H 1.08994 * 109.47800 * 59.99509 * 3 2 1 34 34 H 1.09000 * 109.47209 * 55.00333 * 6 4 2 35 35 H 1.09004 * 109.47686 * 294.99946 * 6 4 2 36 36 H 0.96999 * 119.99726 * 359.97438 * 7 6 4 37 37 H 1.09003 * 110.66161 * 0.28119 * 12 10 8 38 38 H 1.08993 * 110.44048 * 237.46387 * 12 10 8 39 39 H 1.09001 * 109.47060 * 179.72414 * 14 13 12 40 40 H 1.09004 * 109.47073 * 299.71903 * 14 13 12 41 41 H 1.09000 * 109.47212 * 59.71985 * 14 13 12 42 42 H 0.96996 * 125.41041 * 179.97438 * 17 15 13 43 43 H 0.96998 * 120.00191 * 265.00194 * 18 4 2 44 44 H 0.96998 * 119.99893 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6765 -0.2072 2.1393 6 6 1.5300 -2.1636 1.2495 7 7 2.1141 -2.8879 2.3811 8 6 1.8060 -4.1844 2.5826 9 8 1.0456 -4.7515 1.8270 10 6 2.4073 -4.9297 3.7463 11 1 3.4468 -4.6356 3.8917 12 6 1.5857 -4.6831 5.0265 13 7 1.1166 -6.0237 5.4077 14 6 0.2862 -6.3324 6.5745 15 6 1.5642 -6.9168 4.5154 16 8 1.3195 -8.1056 4.5874 17 7 2.3062 -6.3818 3.5369 18 7 3.5049 -0.7206 1.2497 19 6 4.1891 0.3545 1.7511 20 1 3.6487 1.2021 2.1460 21 6 5.5772 0.3548 1.7519 22 7 6.2358 -0.6784 1.2712 23 14 6.5106 1.8216 2.4353 24 1 6.1508 2.0156 3.8630 25 1 7.9706 1.5756 2.3221 26 1 6.1520 3.0392 1.6645 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8898 34 1 1.8184 -2.6510 0.3182 35 1 0.4436 -2.1650 1.3390 36 1 2.7232 -2.4346 2.9847 37 1 0.7405 -4.0262 4.8205 38 1 2.2171 -4.2620 5.8088 39 1 0.0880 -7.4038 6.6062 40 1 0.8097 -6.0328 7.4825 41 1 -0.6568 -5.7904 6.5031 42 1 2.7126 -6.8740 2.8066 43 1 3.9903 -1.4817 0.8948 44 1 7.2058 -0.6783 1.2721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753834864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:48 Heat of formation + Delta-G solvation = -67.049666 kcal Electronic energy + Delta-G solvation = -24947.536032 eV Core-core repulsion = 21320.571890 eV Total energy + Delta-G solvation = -3626.964142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.40010 -40.44339 -38.73925 -37.37011 -35.33079 -35.07658 -34.87343 -32.19523 -30.87821 -29.30562 -28.06195 -27.40100 -25.72940 -24.67974 -23.17931 -21.62429 -21.58468 -20.71364 -19.29383 -18.79486 -18.48820 -17.52133 -17.04330 -16.83898 -16.46089 -16.15461 -15.62653 -15.38227 -15.21236 -15.09637 -14.94923 -14.78738 -14.49485 -14.19407 -13.88799 -13.46515 -13.35347 -13.20534 -12.95662 -12.86419 -12.76631 -12.67487 -12.43058 -12.24072 -11.99654 -11.73620 -11.56336 -11.42798 -11.29522 -11.24458 -10.78101 -10.39826 -10.01788 -9.59284 -8.90734 -7.82820 -5.09266 1.33679 1.54857 1.57069 1.61319 1.66776 1.86574 2.22518 2.64337 2.90717 3.29167 3.50169 3.62340 3.90054 3.91607 3.98172 4.13836 4.33257 4.35577 4.48737 4.50512 4.56087 4.67755 4.73120 4.81596 4.87216 4.94052 4.95591 5.01695 5.11129 5.18795 5.29800 5.35292 5.53398 5.62054 5.65877 5.69522 5.79948 5.99120 6.32508 6.37247 6.57788 7.18705 7.42500 7.46242 8.17459 8.42332 9.39568 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.003915 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.196387 B = 7149.560595 C = 8264.452050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.174 3.826 5 H 0.063 0.937 6 C 0.122 3.878 7 N -0.698 5.698 8 C 0.502 3.498 9 O -0.577 6.577 10 C 0.106 3.894 11 H 0.145 0.855 12 C 0.110 3.890 13 N -0.636 5.636 14 C 0.113 3.887 15 C 0.693 3.307 16 O -0.634 6.634 17 N -0.715 5.715 18 N -0.726 5.726 19 C -0.213 4.213 20 H 0.080 0.920 21 C -0.067 4.067 22 N -0.966 5.966 23 Si 0.954 3.046 24 H -0.276 1.276 25 H -0.307 1.307 26 H -0.287 1.287 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.416 0.584 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.433 0.567 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.078 -1.843 8.720 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.003 4.003 7 N -0.349 5.349 8 C 0.286 3.714 9 O -0.457 6.457 10 C -0.004 4.004 11 H 0.162 0.838 12 C -0.013 4.013 13 N -0.374 5.374 14 C -0.028 4.028 15 C 0.393 3.607 16 O -0.517 6.517 17 N -0.375 5.375 18 N -0.366 5.366 19 C -0.345 4.345 20 H 0.098 0.902 21 C -0.260 4.260 22 N -0.617 5.617 23 Si 0.785 3.215 24 H -0.202 1.202 25 H -0.234 1.234 26 H -0.214 1.214 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.112 0.888 38 H 0.152 0.848 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.275 0.725 43 H 0.205 0.795 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.811 -2.653 8.490 14.786 hybrid contribution 1.611 0.493 -0.528 1.766 sum -10.200 -2.160 7.961 13.118 Atomic orbital electron populations 1.21853 0.94078 1.01797 1.02144 1.21646 0.95807 0.96782 0.98713 1.21736 1.01655 0.95586 1.00265 1.20674 0.83932 0.92157 0.96757 0.91872 1.21628 0.98054 0.92095 0.88494 1.45912 1.48034 1.10554 1.30441 1.21087 0.81325 0.82364 0.86594 1.90710 1.37795 1.68522 1.48645 1.22060 1.03495 0.81437 0.93381 0.83757 1.22516 0.99277 0.85126 0.94424 1.47205 1.55048 1.07369 1.27819 1.21647 0.93996 1.02305 0.84813 1.16122 0.78833 0.84816 0.80901 1.90894 1.65996 1.15726 1.79040 1.44883 1.55796 1.07399 1.29421 1.42564 1.00459 1.20113 1.73453 1.19418 0.88683 0.96603 1.29780 0.90218 1.25274 0.97571 0.99558 1.03565 1.69780 1.06323 1.31648 1.53987 0.85507 0.77207 0.80119 0.78661 1.20233 1.23430 1.21357 0.91968 0.92463 0.92398 0.93447 0.93218 0.93426 0.93210 0.93545 0.90013 0.74627 0.88756 0.84838 0.91301 0.89136 0.90329 0.72540 0.79526 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.84 71.98 0.64 -2.60 16 2 C -0.11 -3.21 2.69 -10.79 -0.03 -3.24 16 3 C -0.14 -4.31 8.26 71.98 0.59 -3.72 16 4 C 0.17 5.43 2.18 44.99 0.10 5.53 16 5 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 6 C 0.12 3.49 4.73 86.38 0.41 3.90 16 7 N -0.70 -18.21 5.39 -463.05 -2.50 -20.70 16 8 C 0.50 13.55 6.93 87.66 0.61 14.15 16 9 O -0.58 -20.49 16.60 -3.03 -0.05 -20.54 16 10 C 0.11 2.18 4.18 44.51 0.19 2.37 16 11 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 12 C 0.11 1.71 7.31 86.65 0.63 2.35 16 13 N -0.64 -13.52 3.36 -863.42 -2.90 -16.42 16 14 C 0.11 1.71 11.21 127.77 1.43 3.14 16 15 C 0.69 20.45 8.60 179.57 1.55 22.00 16 16 O -0.63 -23.98 17.29 -3.96 -0.07 -24.05 16 17 N -0.72 -18.46 5.63 -460.34 -2.59 -21.05 16 18 N -0.73 -29.54 4.44 -322.95 -1.43 -30.97 16 19 C -0.21 -9.79 7.57 84.03 0.64 -9.15 16 20 H 0.08 3.52 7.39 -2.91 -0.02 3.50 16 21 C -0.07 -3.39 5.50 84.86 0.47 -2.93 16 22 N -0.97 -53.23 13.06 21.65 0.28 -52.95 16 23 Si 0.95 41.80 29.55 68.60 2.03 43.82 16 24 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.31 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.26 6.54 -2.38 -0.02 1.25 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.96 6.01 -2.39 -0.01 1.95 16 32 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.14 6.71 -2.38 -0.02 2.13 16 36 H 0.42 10.39 8.14 -92.71 -0.75 9.63 16 37 H 0.09 1.37 7.73 -2.39 -0.02 1.35 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.29 7.52 -2.39 -0.02 1.28 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.43 10.97 8.96 -92.71 -0.83 10.14 16 43 H 0.37 17.13 7.80 -92.71 -0.72 16.41 16 44 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -69.94 359.26 -1.29 -71.22 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -1.28 Total: 39.85 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: 7.22 Total: 31.79 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -9.14 Total: -142.10 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -0.12 Total: -44.59 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -69.94 -1.29 -71.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753834864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.173 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds