Wall clock time and date at job start Fri Apr 10 2020 17:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.52998 * 109.47023 * 119.99992 * 2 1 3 5 5 H 1.09000 * 109.47321 * 299.99781 * 4 2 1 6 6 C 1.53004 * 109.47023 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.47198 * 185.00121 * 6 4 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 4 9 9 O 1.21283 * 119.99990 * 359.71991 * 8 7 6 10 10 C 1.50698 * 119.99538 * 179.72653 * 8 7 6 11 11 H 1.08999 * 110.49516 * 40.69725 * 10 8 7 12 12 C 1.54110 * 110.54706 * 277.99158 * 10 8 7 13 13 N 1.47049 * 103.86521 * 241.40631 * 12 10 8 14 14 C 1.46496 * 125.40990 * 179.97438 * 13 12 10 15 15 C 1.33950 * 109.18031 * 0.02562 * 13 12 10 16 16 O 1.21584 * 123.04168 * 179.97438 * 15 13 12 17 17 N 1.34256 * 113.96169 * 359.91928 * 15 13 12 18 18 N 1.46494 * 109.47389 * 60.00215 * 4 2 1 19 19 C 1.36939 * 119.99807 * 275.00196 * 18 4 2 20 20 H 1.07997 * 120.00301 * 359.97438 * 19 18 4 21 21 C 1.38816 * 119.99803 * 180.02562 * 19 18 4 22 22 N 1.31619 * 120.00011 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99981 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47495 * 89.99434 * 23 21 19 25 25 H 1.48499 * 109.47207 * 209.99869 * 23 21 19 26 26 H 1.48507 * 109.47103 * 329.99434 * 23 21 19 27 27 H 1.09005 * 109.47154 * 299.99575 * 1 2 3 28 28 H 1.09000 * 109.47275 * 59.99802 * 1 2 3 29 29 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47047 * 240.00271 * 2 1 3 31 31 H 1.08990 * 109.47331 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47263 * 300.00206 * 3 2 1 33 33 H 1.09005 * 109.46862 * 59.99662 * 3 2 1 34 34 H 1.09009 * 109.46730 * 64.99908 * 6 4 2 35 35 H 1.08998 * 109.46846 * 305.00453 * 6 4 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 7 6 4 37 37 H 1.09002 * 110.54942 * 0.02562 * 12 10 8 38 38 H 1.09004 * 110.54189 * 122.66735 * 12 10 8 39 39 H 1.08999 * 109.47206 * 90.00354 * 14 13 12 40 40 H 1.08999 * 109.47226 * 210.00368 * 14 13 12 41 41 H 1.09002 * 109.47650 * 330.00319 * 14 13 12 42 42 H 0.97003 * 125.59048 * 180.08201 * 17 15 13 43 43 H 0.97000 * 120.00254 * 94.99110 * 18 4 2 44 44 H 0.97001 * 120.00421 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2496 7 7 4.0584 -1.5129 2.3809 8 6 5.3835 -1.6490 2.5861 9 8 6.1716 -1.1199 1.8312 10 6 5.8859 -2.4589 3.7535 11 1 5.2860 -3.3603 3.8789 12 6 5.8711 -1.6154 5.0432 13 7 7.2831 -1.5715 5.4517 14 6 7.8034 -0.8814 6.6345 15 6 8.0180 -2.2617 4.5698 16 8 9.2234 -2.3880 4.6663 17 7 7.3039 -2.8029 3.5700 18 7 1.5518 -2.1024 1.2493 19 6 0.3102 -2.3897 1.7504 20 1 -0.3089 -1.5981 2.1460 21 6 -0.1523 -3.6985 1.7509 22 7 0.6024 -4.6633 1.2693 23 14 -1.8456 -4.0906 2.4352 24 1 -2.8527 -3.9976 1.3478 25 1 -1.8471 -5.4660 2.9950 26 1 -2.1834 -3.1196 3.5070 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9329 0.3033 1.3393 35 1 3.9337 -1.1546 0.3182 36 1 3.4281 -1.9358 2.9849 37 1 5.5000 -0.6110 4.8393 38 1 5.2638 -2.0981 5.8090 39 1 7.7979 -1.5633 7.4848 40 1 8.8235 -0.5490 6.4419 41 1 7.1760 -0.0182 6.8571 42 1 7.6635 -3.3349 2.8430 43 1 2.1078 -2.8135 0.8942 44 1 0.2792 -5.5779 1.2693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753834865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:52 Heat of formation + Delta-G solvation = -67.385851 kcal Electronic energy + Delta-G solvation = -24952.489060 eV Core-core repulsion = 21325.510339 eV Total energy + Delta-G solvation = -3626.978720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.37613 -40.43564 -38.73751 -37.36955 -35.33201 -35.06393 -34.87388 -32.19499 -30.87067 -29.29654 -28.06196 -27.40064 -25.72995 -24.68357 -23.17981 -21.62335 -21.57986 -20.71154 -19.29114 -18.79022 -18.48116 -17.50429 -17.05176 -16.84045 -16.45010 -16.15210 -15.62145 -15.38567 -15.21820 -15.09332 -14.95855 -14.78503 -14.45529 -14.19109 -13.89661 -13.47324 -13.36353 -13.25677 -12.94095 -12.86168 -12.80477 -12.67528 -12.42644 -12.22948 -11.94627 -11.74149 -11.54624 -11.42626 -11.28896 -11.24534 -10.79320 -10.40117 -10.01499 -9.58881 -8.90811 -7.83046 -5.09417 1.35012 1.53625 1.56909 1.62300 1.65543 1.86259 2.22558 2.64139 2.90947 3.29260 3.50181 3.62209 3.90500 3.91773 3.98233 4.13146 4.33406 4.35671 4.48456 4.50509 4.55475 4.67672 4.73003 4.81662 4.86778 4.94654 4.95789 5.01805 5.11309 5.18898 5.29989 5.35477 5.53589 5.61621 5.66084 5.69729 5.80047 6.00058 6.32400 6.37216 6.58115 7.19043 7.42488 7.46154 8.17358 8.42154 9.39581 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003924 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.493716 B = 7133.681576 C = 8240.357300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.063 0.937 6 C 0.122 3.878 7 N -0.698 5.698 8 C 0.502 3.498 9 O -0.577 6.577 10 C 0.106 3.894 11 H 0.145 0.855 12 C 0.109 3.891 13 N -0.635 5.635 14 C 0.116 3.884 15 C 0.692 3.308 16 O -0.634 6.634 17 N -0.716 5.716 18 N -0.726 5.726 19 C -0.211 4.211 20 H 0.081 0.919 21 C -0.068 4.068 22 N -0.966 5.966 23 Si 0.953 3.047 24 H -0.300 1.300 25 H -0.304 1.304 26 H -0.267 1.267 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.416 0.584 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.433 0.567 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 9.892 8.693 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.003 4.003 7 N -0.350 5.350 8 C 0.286 3.714 9 O -0.457 6.457 10 C -0.004 4.004 11 H 0.162 0.838 12 C -0.014 4.014 13 N -0.374 5.374 14 C -0.025 4.025 15 C 0.393 3.607 16 O -0.516 6.516 17 N -0.376 5.376 18 N -0.366 5.366 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.260 4.260 22 N -0.618 5.618 23 Si 0.785 3.215 24 H -0.228 1.228 25 H -0.232 1.232 26 H -0.192 1.192 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.254 0.746 37 H 0.114 0.886 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.275 0.725 43 H 0.205 0.795 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.257 10.341 8.488 14.770 hybrid contribution -0.972 -1.386 -0.540 1.777 sum 5.285 8.956 7.948 13.088 Atomic orbital electron populations 1.21740 0.95499 1.01745 1.00282 1.21645 0.96332 0.96273 0.98709 1.21851 1.00836 0.95039 1.02146 1.20675 0.90025 0.86056 0.96763 0.91856 1.21627 0.94525 0.95607 0.88513 1.45905 1.06379 1.52256 1.30415 1.21093 0.82543 0.81095 0.86633 1.90710 1.56427 1.49756 1.48789 1.22047 0.84696 1.00252 0.93434 0.83788 1.22544 0.83272 1.01646 0.93950 1.47201 1.08009 1.54925 1.27229 1.21625 0.99987 0.97097 0.83794 1.16204 0.84648 0.78963 0.80917 1.90895 1.13553 1.67983 1.79148 1.44950 1.07165 1.56758 1.28736 1.42577 1.17225 1.03346 1.73447 1.19458 0.93280 0.91955 1.29618 0.90165 1.25272 1.00819 0.96299 1.03620 1.69785 1.38209 0.99697 1.54073 0.85436 0.81407 0.76700 0.77980 1.22804 1.23174 1.19183 0.93195 0.93407 0.93195 0.93454 0.92409 0.92464 0.91966 0.90031 0.93548 0.74620 0.88620 0.84857 0.91070 0.92101 0.87802 0.72513 0.79521 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.26 71.98 0.59 -3.70 16 2 C -0.11 -3.20 2.69 -10.79 -0.03 -3.23 16 3 C -0.14 -3.22 8.84 71.98 0.64 -2.59 16 4 C 0.17 5.41 2.18 44.99 0.10 5.51 16 5 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 6 C 0.12 3.48 4.73 86.38 0.41 3.89 16 7 N -0.70 -18.13 5.39 -463.05 -2.49 -20.63 16 8 C 0.50 13.51 6.94 87.66 0.61 14.12 16 9 O -0.58 -20.46 16.58 -3.04 -0.05 -20.51 16 10 C 0.11 2.16 4.16 44.51 0.19 2.35 16 11 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 12 C 0.11 1.68 7.32 86.65 0.63 2.32 16 13 N -0.63 -13.45 3.36 -863.14 -2.90 -16.35 16 14 C 0.12 1.73 11.03 127.77 1.41 3.14 16 15 C 0.69 20.44 8.61 179.48 1.54 21.99 16 16 O -0.63 -24.04 17.53 -3.98 -0.07 -24.11 16 17 N -0.72 -18.47 5.64 -459.89 -2.59 -21.06 16 18 N -0.73 -29.46 4.44 -322.95 -1.43 -30.90 16 19 C -0.21 -9.68 7.57 84.03 0.64 -9.05 16 20 H 0.08 3.54 7.40 -2.91 -0.02 3.52 16 21 C -0.07 -3.41 5.50 84.86 0.47 -2.95 16 22 N -0.97 -53.22 13.06 21.65 0.28 -52.93 16 23 Si 0.95 41.79 29.55 68.60 2.03 43.82 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.96 6.01 -2.38 -0.01 1.94 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.26 6.54 -2.39 -0.02 1.24 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 2.13 6.71 -2.38 -0.02 2.12 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.42 10.32 8.14 -92.71 -0.75 9.57 16 37 H 0.10 1.35 7.72 -2.39 -0.02 1.33 16 38 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.12 7.91 -2.39 -0.02 1.10 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.43 10.97 8.96 -92.71 -0.83 10.14 16 43 H 0.37 17.10 7.80 -92.71 -0.72 16.38 16 44 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -70.22 359.70 -1.31 -71.53 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -1.28 Total: 39.34 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 7.19 Total: 31.79 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -9.14 Total: -141.87 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.12 Total: -44.61 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -70.22 -1.31 -71.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753834865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.143 kcal (2) G-P(sol) polarization free energy of solvation -70.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds