Wall clock time and date at job start Fri Apr 10 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99798 * 2 1 4 4 H 1.48502 * 109.47083 * 269.99815 * 3 2 1 5 5 H 1.48492 * 109.47369 * 30.00168 * 3 2 1 6 6 H 1.48503 * 109.46571 * 150.00431 * 3 2 1 7 7 C 1.38806 * 119.99443 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00657 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99741 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00255 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46875 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43547 * 52.46189 * 11 10 9 13 13 C 1.54880 * 110.59867 * 289.84099 * 11 10 9 14 14 C 1.54889 * 102.74685 * 203.32720 * 13 11 10 15 15 C 1.54265 * 104.19543 * 37.94483 * 14 13 11 16 16 C 1.53875 * 106.59815 * 336.38771 * 15 14 13 17 17 H 1.08994 * 110.07372 * 240.69471 * 16 15 14 18 18 N 1.46505 * 110.02653 * 119.28602 * 16 15 14 19 19 C 1.34777 * 119.99722 * 87.83823 * 18 16 15 20 20 O 1.21283 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99537 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.47004 * 179.97438 * 21 19 18 23 23 N 1.46500 * 109.47528 * 180.02562 * 22 21 19 24 24 C 1.34773 * 120.00431 * 180.02562 * 23 22 21 25 25 N 1.34777 * 120.00097 * 179.72742 * 24 23 22 26 26 O 1.21593 * 119.99894 * 359.97438 * 24 23 22 27 27 H 0.97001 * 120.00069 * 359.97438 * 1 2 3 28 28 H 0.97007 * 119.99894 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.46743 * 60.00540 * 10 9 7 30 30 H 1.08996 * 109.47180 * 300.00539 * 10 9 7 31 31 H 1.09000 * 110.76163 * 321.63780 * 13 11 10 32 32 H 1.09004 * 110.75785 * 85.01499 * 13 11 10 33 33 H 1.09004 * 110.48645 * 156.62422 * 14 13 11 34 34 H 1.08999 * 110.48912 * 279.13066 * 14 13 11 35 35 H 1.09007 * 110.02809 * 217.10562 * 15 14 13 36 36 H 1.08998 * 110.03560 * 95.67841 * 15 14 13 37 37 H 0.97000 * 119.99795 * 267.82939 * 18 16 15 38 38 H 1.09003 * 109.47112 * 60.00444 * 21 19 18 39 39 H 1.08993 * 109.47444 * 300.00068 * 21 19 18 40 40 H 1.09009 * 109.47054 * 60.00482 * 22 21 19 41 41 H 1.08998 * 109.47782 * 300.00944 * 22 21 19 42 42 H 0.97000 * 119.99456 * 0.02562 * 23 22 21 43 43 H 0.96999 * 120.00043 * 180.27820 * 25 24 23 44 44 H 0.97000 * 119.99736 * 0.26819 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0011 12 1 5.8768 -1.5100 0.8088 13 6 6.0621 -1.6080 -1.3648 14 6 7.5703 -1.9580 -1.4097 15 6 7.6525 -3.3598 -0.7708 16 6 6.4101 -3.5081 0.1249 17 1 6.7120 -3.6645 1.1604 18 7 5.5920 -4.6333 -0.3344 19 6 5.8371 -5.8764 0.1250 20 8 6.7352 -6.0636 0.9183 21 6 4.9951 -7.0337 -0.3470 22 6 5.4787 -8.3222 0.3213 23 7 4.6606 -9.4474 -0.1379 24 6 4.9057 -10.6906 0.3213 25 7 4.1496 -11.7248 -0.0970 26 8 5.8062 -10.8783 1.1166 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8490 -3.0424 0.8891 31 1 5.5292 -2.0903 -2.1842 32 1 5.9153 -0.5282 -1.3896 33 1 7.9247 -1.9870 -2.4401 34 1 8.1466 -1.2376 -0.8292 35 1 8.5582 -3.4437 -0.1700 36 1 7.6467 -4.1249 -1.5471 37 1 4.8738 -4.4835 -0.9690 38 1 5.0844 -7.1305 -1.4291 39 1 3.9526 -6.8562 -0.0830 40 1 5.3897 -8.2258 1.4035 41 1 6.5212 -8.4996 0.0570 42 1 3.9426 -9.2977 -0.7726 43 1 4.3234 -12.6189 0.2366 44 1 3.4315 -11.5750 -0.7317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753900706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:09 Heat of formation + Delta-G solvation = -68.380161 kcal Electronic energy + Delta-G solvation = -24115.477643 eV Core-core repulsion = 20488.455806 eV Total energy + Delta-G solvation = -3627.021837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.35415 -39.87895 -38.18309 -35.32565 -34.62289 -33.91111 -33.56112 -31.62310 -30.83329 -29.09857 -27.69318 -24.81204 -24.05293 -22.07744 -21.42002 -20.74674 -20.44214 -19.44575 -18.61186 -17.69286 -17.58579 -17.09979 -16.22649 -15.86437 -15.26262 -15.18334 -14.82568 -14.63715 -14.36668 -14.31042 -14.00466 -13.59875 -13.43987 -13.23332 -12.70446 -12.48624 -12.13085 -11.88856 -11.72970 -11.51537 -11.04086 -10.99749 -10.95447 -10.59456 -10.56271 -10.51670 -10.44618 -10.12384 -9.99467 -9.88300 -9.65066 -9.28698 -9.01927 -8.95541 -7.29732 -5.82891 -3.18689 2.52008 2.59479 2.97784 3.26545 3.32944 3.35543 3.41393 4.19057 4.47769 4.50191 4.54033 4.66816 4.81281 4.83251 4.93344 5.20524 5.27060 5.41772 5.50919 5.56012 5.62794 5.66780 5.71104 5.75393 5.76480 5.81678 5.94315 5.98868 6.14648 6.16860 6.30484 6.34197 6.40634 6.54824 6.59031 6.61446 6.64821 7.49608 7.66447 7.92191 8.19766 8.36101 8.36417 9.14947 9.87467 10.07039 11.35441 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.003086 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.751235 B = 9070.988860 C =10536.334304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.112 4.112 12 H 0.087 0.913 13 C -0.116 4.116 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.149 3.851 17 H 0.090 0.910 18 N -0.717 5.717 19 C 0.518 3.482 20 O -0.541 6.541 21 C -0.156 4.156 22 C 0.153 3.847 23 N -0.746 5.746 24 C 0.704 3.296 25 N -0.869 5.869 26 O -0.592 6.592 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.405 0.595 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.397 0.603 43 H 0.414 0.586 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.069 -15.882 -6.106 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.041 3.959 11 C -0.132 4.132 12 H 0.105 0.895 13 C -0.153 4.153 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.044 3.956 17 H 0.108 0.892 18 N -0.371 5.371 19 C 0.304 3.696 20 O -0.418 6.418 21 C -0.197 4.197 22 C 0.029 3.971 23 N -0.403 5.403 24 C 0.402 3.598 25 N -0.437 5.437 26 O -0.469 6.469 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.242 0.758 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.230 0.770 43 H 0.246 0.754 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 12.296 -16.069 -4.841 20.805 hybrid contribution -0.601 1.148 -0.843 1.546 sum 11.695 -14.921 -5.685 19.792 Atomic orbital electron populations 1.69700 1.05125 1.25902 1.57415 1.24675 0.95235 0.97255 1.01924 0.86546 0.79251 0.84951 0.77776 1.21043 1.21712 1.20309 1.19031 0.80610 0.94687 1.43232 0.89288 1.42700 1.04007 1.02159 1.91049 1.20552 0.87730 0.89414 0.98164 1.22536 0.96467 0.95438 0.98719 0.89491 1.22544 0.94637 1.01219 0.96935 1.22383 0.97141 0.96360 1.00422 1.22567 0.97843 0.97502 0.99038 1.21587 0.90084 0.85005 0.98951 0.89151 1.46251 1.36694 1.06789 1.47324 1.20256 0.84290 0.83997 0.81083 1.90734 1.32277 1.84604 1.34216 1.21820 1.01644 0.93457 1.02746 1.20885 0.94700 0.81908 0.99638 1.45078 1.38631 1.06443 1.50151 1.15940 0.82101 0.80808 0.80922 1.42990 1.38468 1.10320 1.51962 1.91002 1.33923 1.84074 1.37949 0.93012 0.80590 0.95896 0.95395 0.91103 0.91299 0.91819 0.91665 0.91378 0.91452 0.75753 0.88210 0.87806 0.90490 0.90644 0.76973 0.75389 0.77584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.97 55.49 0.78 -27.95 16 2 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.25 -6.70 10.47 -15.06 -0.16 -6.86 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 9 N -0.75 -16.92 5.30 -59.91 -0.32 -17.24 16 10 C 0.17 2.94 4.74 -4.04 -0.02 2.92 16 11 C -0.11 -1.56 2.84 -88.96 -0.25 -1.82 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.12 -1.47 6.20 -24.74 -0.15 -1.62 16 14 C -0.13 -1.32 6.83 -25.07 -0.17 -1.49 16 15 C -0.13 -1.44 6.59 -25.61 -0.17 -1.61 16 16 C 0.15 1.85 3.12 -66.81 -0.21 1.65 16 17 H 0.09 1.26 7.56 -51.93 -0.39 0.86 16 18 N -0.72 -8.10 4.34 -52.72 -0.23 -8.33 16 19 C 0.52 6.15 7.83 -10.99 -0.09 6.06 16 20 O -0.54 -8.50 15.64 5.55 0.09 -8.42 16 21 C -0.16 -1.25 5.81 -27.88 -0.16 -1.42 16 22 C 0.15 1.56 4.96 -4.04 -0.02 1.54 16 23 N -0.75 -5.99 5.56 -65.22 -0.36 -6.35 16 24 C 0.70 7.34 8.84 -86.92 -0.77 6.58 16 25 N -0.87 -4.94 8.88 27.63 0.25 -4.69 16 26 O -0.59 -9.32 17.18 5.28 0.09 -9.23 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.36 7.98 5.50 -40.82 -0.22 7.76 16 29 H 0.02 0.38 6.42 -51.93 -0.33 0.05 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 37 H 0.41 4.10 6.57 -40.82 -0.27 3.83 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.97 8.10 -51.92 -0.42 0.55 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.40 1.79 8.49 -40.82 -0.35 1.45 16 43 H 0.41 2.03 8.93 -40.82 -0.36 1.67 16 44 H 0.40 0.95 8.84 -40.82 -0.36 0.59 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -36.92 358.96 -8.21 -45.13 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.93 Total: 10.84 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.26 Total: 3.97 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.11 Total: -64.56 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.18 Total: -17.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.92 -8.21 -45.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753900706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.252 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds