Wall clock time and date at job start Fri Apr 10 2020 17:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46962 * 2 1 4 4 C 1.53003 * 109.47243 * 240.00561 * 2 1 3 5 5 N 1.46496 * 109.47068 * 185.00213 * 4 2 1 6 6 C 1.36937 * 119.99759 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00254 * 0.02562 * 6 5 4 8 8 C 1.38821 * 119.99875 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99575 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47415 * 90.00002 * 10 8 6 12 12 H 1.48499 * 109.46882 * 210.00057 * 10 8 6 13 13 H 1.48503 * 109.47014 * 329.99855 * 10 8 6 14 14 N 1.46500 * 109.47272 * 119.99966 * 2 1 3 15 15 C 1.34774 * 120.00209 * 275.00449 * 14 2 1 16 16 O 1.21289 * 119.99735 * 359.97438 * 15 14 2 17 17 C 1.50693 * 119.99942 * 180.02562 * 15 14 2 18 18 N 1.46509 * 109.47014 * 179.97438 * 17 15 14 19 19 C 1.34779 * 119.99795 * 180.02562 * 18 17 15 20 20 O 1.21578 * 120.00186 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99572 * 179.97438 * 19 18 17 22 22 C 1.47024 * 125.64847 * 359.68614 * 21 19 18 23 23 C 1.54327 * 107.26851 * 181.32598 * 22 21 19 24 24 C 1.55154 * 102.94372 * 22.19158 * 23 22 21 25 25 C 1.47426 * 125.64645 * 179.97438 * 21 19 18 26 26 H 1.09005 * 109.47221 * 59.99686 * 1 2 3 27 27 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47182 * 300.00163 * 1 2 3 29 29 H 1.09000 * 109.46518 * 304.99830 * 4 2 1 30 30 H 1.08998 * 109.47381 * 64.99303 * 4 2 1 31 31 H 0.97000 * 120.00407 * 359.97438 * 5 4 2 32 32 H 0.97009 * 119.99621 * 179.97438 * 9 8 6 33 33 H 0.97003 * 119.99641 * 94.99859 * 14 2 1 34 34 H 1.08999 * 109.47855 * 59.99748 * 17 15 14 35 35 H 1.08995 * 109.46982 * 299.99024 * 17 15 14 36 36 H 0.97004 * 119.99661 * 359.97438 * 18 17 15 37 37 H 1.08997 * 109.88062 * 300.74548 * 22 21 19 38 38 H 1.09000 * 109.88248 * 61.90735 * 22 21 19 39 39 H 1.09005 * 110.71834 * 263.82776 * 23 22 21 40 40 H 1.08999 * 110.71553 * 140.55738 * 23 22 21 41 41 H 1.09000 * 111.00849 * 206.42090 * 24 23 22 42 42 H 1.09001 * 111.00585 * 82.56882 * 24 23 22 43 43 H 1.09004 * 110.36499 * 274.44757 * 25 21 19 44 44 H 1.08998 * 110.36482 * 36.65820 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2068 7 1 3.6468 -1.8437 -3.0517 8 6 5.5673 -1.5379 -2.1514 9 7 6.2218 -1.0428 -1.1225 10 14 6.5001 -2.3726 -3.5380 11 1 6.8618 -1.3656 -4.5678 12 1 7.7358 -2.9951 -2.9988 13 1 5.6441 -3.4207 -4.1497 14 7 2.0184 -0.6906 1.1962 15 6 2.1470 -0.0183 2.3571 16 8 1.8589 1.1586 2.4115 17 6 2.6499 -0.7286 3.5874 18 7 2.6996 0.2129 4.7088 19 6 3.1221 -0.2027 5.9193 20 8 3.4616 -1.3589 6.0808 21 7 3.1683 0.6636 6.9508 22 6 2.7950 2.0845 6.8938 23 6 3.0412 2.6794 8.2964 24 6 4.0726 1.6985 8.9138 25 6 3.6072 0.3447 8.3216 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7197 -1.2952 30 1 1.7516 -0.1582 -2.1370 31 1 3.9825 -0.4622 -0.4319 32 1 7.1886 -1.1125 -1.0836 33 1 2.2490 -1.6318 1.1525 34 1 3.6493 -1.1204 3.3979 35 1 1.9777 -1.5508 3.8324 36 1 2.4291 1.1355 4.5798 37 1 3.4122 2.6007 6.1586 38 1 1.7418 2.1808 6.6299 39 1 2.1199 2.6875 8.8790 40 1 3.4601 3.6829 8.2214 41 1 4.0041 1.6932 10.0017 42 1 5.0846 1.9401 8.5889 43 1 2.7768 -0.0581 8.9017 44 1 4.4335 -0.3658 8.2997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754225068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:17 Heat of formation + Delta-G solvation = -79.590234 kcal Electronic energy + Delta-G solvation = -24144.262635 eV Core-core repulsion = 20516.754693 eV Total energy + Delta-G solvation = -3627.507942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55978 -40.72876 -38.55396 -37.77090 -35.66093 -35.39518 -33.22945 -32.59651 -31.61790 -29.99728 -28.41143 -27.40363 -24.67766 -24.35344 -22.49543 -22.00954 -21.50018 -21.10900 -19.64852 -19.15383 -17.80853 -17.70119 -17.45044 -16.87140 -16.68780 -16.55207 -15.78339 -15.57584 -15.35970 -15.22757 -14.55586 -14.43835 -14.25777 -14.04927 -13.94922 -13.75687 -13.63266 -13.42216 -13.20222 -13.06869 -12.79726 -12.62713 -12.21476 -12.15934 -12.14701 -11.89966 -11.70180 -11.59540 -11.48930 -11.10899 -10.93823 -10.42955 -10.10235 -9.58591 -9.01419 -7.94937 -5.24232 1.35821 1.48336 1.48558 1.49460 1.57935 1.99624 2.20262 2.56060 2.95287 3.39683 3.56909 3.67499 3.72150 3.85614 4.04996 4.06892 4.26707 4.29979 4.31782 4.34862 4.48244 4.52500 4.62778 4.80769 4.85500 4.87375 4.92269 4.95149 4.98733 5.10382 5.11784 5.21524 5.24355 5.32208 5.36151 5.50386 5.53331 5.93951 6.25881 6.45725 6.81934 7.09748 7.33462 7.39558 8.07461 8.30277 9.27980 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.002986 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.992982 B = 9373.973760 C =10410.362086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.141 3.859 3 H 0.064 0.936 4 C 0.144 3.856 5 N -0.745 5.745 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.290 1.290 12 H -0.299 1.299 13 H -0.267 1.267 14 N -0.701 5.701 15 C 0.516 3.484 16 O -0.572 6.572 17 C 0.124 3.876 18 N -0.726 5.726 19 C 0.717 3.283 20 O -0.632 6.632 21 N -0.639 5.639 22 C 0.087 3.913 23 C -0.120 4.120 24 C -0.125 4.125 25 C 0.114 3.886 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.374 0.626 32 H 0.249 0.751 33 H 0.412 0.588 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.701 6.453 18.514 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.037 3.963 3 H 0.082 0.918 4 C 0.017 3.983 5 N -0.388 5.388 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.268 4.268 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.217 1.217 12 H -0.225 1.225 13 H -0.191 1.191 14 N -0.351 5.351 15 C 0.302 3.698 16 O -0.453 6.453 17 C -0.004 4.004 18 N -0.384 5.384 19 C 0.418 3.582 20 O -0.513 6.513 21 N -0.377 5.377 22 C -0.035 4.035 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.008 4.008 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.058 0.942 33 H 0.248 0.752 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.689 6.305 18.391 22.685 hybrid contribution 1.112 -0.375 -0.829 1.437 sum -10.577 5.929 17.562 21.341 Atomic orbital electron populations 1.22005 0.92413 1.03224 1.02817 1.21149 0.95470 0.96231 0.83493 0.91803 1.21163 0.83924 0.98166 0.95043 1.42545 1.01931 1.69968 1.24331 1.19637 0.89823 1.28328 0.99686 0.90207 1.25561 0.97614 1.03099 1.00476 1.69825 1.06973 1.52786 1.32307 0.85152 0.77930 0.78146 0.78580 1.21718 1.22547 1.19137 1.45860 1.65670 1.14826 1.08773 1.20537 0.77051 0.86949 0.85224 1.90636 1.52400 1.16812 1.85431 1.20860 1.03702 0.92281 0.83587 1.44665 1.71171 1.14963 1.07638 1.15506 0.78542 0.83901 0.80219 1.90895 1.57827 1.18567 1.84059 1.47685 1.69473 1.10813 1.09726 1.22295 1.00725 0.79809 1.00657 1.22628 1.00523 0.99678 0.92934 1.22807 0.99307 0.92176 1.01993 1.22309 0.99416 0.99051 0.80034 0.90095 0.90878 0.92654 0.94053 0.94242 0.79400 0.94183 0.75162 0.88985 0.86927 0.75120 0.91676 0.90801 0.88951 0.88150 0.87118 0.90825 0.90821 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.48 71.98 0.68 -2.79 16 2 C 0.14 4.41 2.73 44.99 0.12 4.53 16 3 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 4 C 0.14 5.23 5.82 86.38 0.50 5.73 16 5 N -0.74 -36.11 5.43 -343.45 -1.87 -37.97 16 6 C -0.24 -13.12 9.99 84.04 0.84 -12.28 16 7 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 8 C -0.08 -4.26 5.50 84.87 0.47 -3.79 16 9 N -0.97 -59.05 13.06 21.65 0.28 -58.76 16 10 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 N -0.70 -21.05 4.52 -442.53 -2.00 -23.05 16 15 C 0.52 15.95 7.86 87.66 0.69 16.64 16 16 O -0.57 -20.24 15.33 -3.06 -0.05 -20.29 16 17 C 0.12 3.49 6.15 85.63 0.53 4.02 16 18 N -0.73 -20.40 5.49 -482.30 -2.65 -23.04 16 19 C 0.72 21.80 8.49 179.05 1.52 23.32 16 20 O -0.63 -23.96 16.59 -3.96 -0.07 -24.02 16 21 N -0.64 -14.63 3.33 -829.71 -2.76 -17.39 16 22 C 0.09 1.37 6.15 86.73 0.53 1.90 16 23 C -0.12 -1.09 6.95 31.78 0.22 -0.86 16 24 C -0.12 -1.31 7.09 31.99 0.23 -1.08 16 25 C 0.11 2.07 6.91 86.86 0.60 2.67 16 26 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.37 19.74 7.33 -92.71 -0.68 19.06 16 32 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 33 H 0.41 11.72 8.60 -92.71 -0.80 10.92 16 34 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.41 10.87 6.42 -92.71 -0.60 10.27 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.06 1.31 8.03 -2.39 -0.02 1.29 16 Total: -1.00 -74.12 365.84 -1.20 -75.32 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -1.05 Total: 43.45 kcal Atomic # 6 Polarization: 31.08 SS G_CDS: 6.93 Total: 38.01 kcal Atomic # 7 Polarization: -151.23 SS G_CDS: -8.99 Total: -160.22 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.11 Total: -44.31 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.12 -1.20 -75.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754225068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.275 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds