Wall clock time and date at job start Fri Apr 10 2020 17:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99924 * 2 1 4 4 H 1.09006 * 109.47395 * 30.00034 * 3 2 1 5 5 C 1.50702 * 109.47511 * 270.00261 * 3 2 1 6 6 O 1.21282 * 119.99684 * 354.99798 * 5 3 2 7 7 N 1.34769 * 120.00461 * 174.99734 * 5 3 2 8 8 C 1.46500 * 120.00237 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 O 1.42903 * 110.63860 * 66.68903 * 9 8 7 11 11 C 1.55163 * 110.71776 * 190.02094 * 9 8 7 12 12 C 1.54907 * 101.57736 * 153.86275 * 11 9 8 13 13 N 1.47419 * 104.83507 * 322.99305 * 12 11 9 14 14 C 1.36940 * 125.64886 * 204.16172 * 13 12 11 15 15 H 1.07996 * 120.00387 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99833 * 359.96123 * 14 13 12 17 17 N 1.31620 * 120.00267 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47296 * 90.00126 * 18 16 14 20 20 H 1.48504 * 109.47057 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47207 * 329.99872 * 18 16 14 22 22 C 1.47017 * 108.70543 * 24.12815 * 13 12 11 23 23 C 1.52996 * 109.47420 * 150.00139 * 3 2 1 24 24 C 1.53009 * 117.49497 * 8.74949 * 23 3 2 25 25 C 1.53004 * 117.50035 * 300.09173 * 23 3 2 26 26 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 299.99484 * 1 2 3 28 28 H 1.08993 * 109.47070 * 59.99956 * 1 2 3 29 29 H 0.97010 * 119.99854 * 0.02562 * 7 5 3 30 30 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 31 31 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 32 32 H 0.96695 * 114.00286 * 300.69612 * 10 9 8 33 33 H 1.08999 * 111.00623 * 271.94003 * 11 9 8 34 34 H 1.09000 * 111.00045 * 35.79396 * 11 9 8 35 35 H 1.09001 * 110.36318 * 204.15216 * 12 11 9 36 36 H 1.09000 * 110.36707 * 81.83205 * 12 11 9 37 37 H 0.97001 * 120.00327 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.88349 * 239.52192 * 22 13 12 39 39 H 1.09008 * 109.88383 * 118.35396 * 22 13 12 40 40 H 1.09004 * 115.55449 * 154.41658 * 23 3 2 41 41 H 1.08999 * 117.49820 * 359.97438 * 24 23 3 42 42 H 1.09000 * 117.49907 * 145.02607 * 24 23 3 43 43 H 1.09000 * 117.49831 * 214.97641 * 25 23 3 44 44 H 1.09007 * 117.49534 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6588 3.0124 -1.6686 8 6 2.8568 3.4588 -3.0498 9 6 3.3628 4.9028 -3.0515 10 8 4.6740 4.9777 -2.4882 11 6 3.3439 5.4893 -4.4879 12 6 3.2040 7.0055 -4.2027 13 7 2.3088 7.0888 -3.0345 14 6 1.5320 8.1656 -2.6995 15 1 0.9069 8.1277 -1.8196 16 6 1.5482 9.3061 -3.4907 17 7 2.3106 9.3527 -4.5626 18 14 0.4891 10.7753 -3.0332 19 1 1.2584 11.6824 -2.1442 20 1 0.0968 11.5054 -4.2654 21 1 -0.7297 10.3061 -2.3266 22 6 2.3874 5.8241 -2.2891 23 6 3.3589 1.2633 0.7212 24 6 3.9153 -0.1111 1.0990 25 6 3.3639 0.8167 2.1846 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.8474 3.6152 -0.9322 30 1 1.9108 3.4044 -3.5884 31 1 3.5901 2.8166 -3.5376 32 1 4.7293 4.6592 -1.5769 33 1 4.2763 5.2743 -5.0100 34 1 2.4879 5.1170 -5.0506 35 1 2.7590 7.5129 -5.0587 36 1 4.1762 7.4385 -3.9673 37 1 2.3222 10.1498 -5.1152 38 1 1.4019 5.3609 -2.2398 39 1 2.7629 6.0096 -1.2827 40 1 4.0735 2.0321 0.4272 41 1 3.3203 -0.9851 0.8341 42 1 4.9960 -0.2462 1.0540 43 1 4.0820 1.2914 2.8532 44 1 2.4062 0.5532 2.6336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754748325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:35 Heat of formation + Delta-G solvation = -71.916113 kcal Electronic energy + Delta-G solvation = -25097.331780 eV Core-core repulsion = 21437.863862 eV Total energy + Delta-G solvation = -3659.467918 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.40280 -38.91675 -37.76641 -36.37222 -35.14331 -34.18413 -32.13358 -30.08002 -29.21501 -27.84872 -26.43995 -25.50582 -23.52930 -22.60354 -21.72213 -20.66155 -19.95740 -19.93218 -18.15831 -17.07267 -16.87676 -16.53387 -16.15264 -15.46792 -15.19525 -14.85811 -14.74679 -14.58790 -14.13569 -13.84623 -13.64207 -13.36850 -13.10700 -12.95905 -12.29641 -12.13288 -11.85249 -11.73388 -11.61896 -11.61006 -11.07260 -10.93447 -10.91041 -10.80436 -10.67009 -10.45272 -10.36645 -10.17946 -10.02702 -9.74580 -9.50532 -9.28091 -9.10756 -8.68723 -6.89874 -5.69846 -3.12519 2.48563 2.89596 3.36826 3.41403 3.43787 3.45986 3.60129 4.30897 4.41613 4.44692 4.52267 4.60589 4.78517 4.89958 4.92237 5.03826 5.14696 5.16819 5.24750 5.36074 5.42159 5.45657 5.47868 5.60553 5.61309 5.82225 5.85250 5.95973 6.01053 6.20013 6.30083 6.36191 6.46840 6.56008 6.59422 6.72169 7.38619 7.52528 7.57227 7.80660 7.90555 8.13719 8.30664 9.16385 9.76898 10.41127 11.33844 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020957 B = 0.003371 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.778522 B = 8303.377083 C = 8628.814104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.104 3.896 4 H 0.091 0.909 5 C 0.494 3.506 6 O -0.525 6.525 7 N -0.725 5.725 8 C 0.104 3.896 9 C 0.105 3.895 10 O -0.543 6.543 11 C -0.128 4.128 12 C 0.156 3.844 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.920 5.920 18 Si 0.916 3.084 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.117 3.883 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.168 4.168 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.399 0.601 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.364 0.636 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.030 0.970 39 H 0.023 0.977 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 -16.703 11.153 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.042 3.958 4 H 0.109 0.891 5 C 0.279 3.721 6 O -0.401 6.401 7 N -0.379 5.379 8 C -0.020 4.020 9 C 0.064 3.936 10 O -0.347 6.347 11 C -0.167 4.167 12 C 0.031 3.969 13 N -0.326 5.326 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.746 3.254 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C -0.010 4.010 23 C -0.181 4.181 24 C -0.195 4.195 25 C -0.205 4.205 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.210 0.790 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.939 -16.974 9.791 19.618 hybrid contribution -0.765 1.146 1.153 1.796 sum 0.174 -15.828 10.944 19.244 Atomic orbital electron populations 1.22881 0.80488 1.03243 1.00236 1.87961 1.20085 1.24806 1.94386 1.21429 0.95443 0.86866 0.92041 0.89147 1.21195 0.77229 0.81703 0.91933 1.90712 1.49685 1.53676 1.46007 1.46062 1.68078 1.14355 1.09423 1.22098 1.01996 0.95371 0.82498 1.22561 0.82824 0.91094 0.97133 1.86631 1.28943 1.87735 1.31394 1.23056 1.01369 1.00433 0.91848 1.21943 0.93395 0.88637 0.92882 1.44412 1.49830 1.11528 1.26813 1.19051 1.17458 0.91256 1.07760 0.90537 1.24799 0.99894 0.98214 0.97558 1.69791 1.42072 1.28209 1.16713 0.86061 0.79653 0.82454 0.77231 1.21574 1.21569 1.20701 1.21911 0.95933 0.88675 0.94511 1.22267 0.96503 1.01229 0.98120 1.22901 1.00769 0.93984 1.01854 1.22980 1.03267 1.03770 0.90507 0.89188 0.93875 0.93472 0.76664 0.90357 0.90683 0.78999 0.91036 0.90592 0.87422 0.96356 0.93605 0.95229 0.95961 0.86202 0.87407 0.88760 0.88382 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.36 -4.09 8.24 -55.09 -0.45 -4.55 16 3 C 0.10 1.08 2.87 -27.88 -0.08 1.00 16 4 H 0.09 0.77 7.79 -51.93 -0.40 0.37 16 5 C 0.49 6.64 7.12 -10.99 -0.08 6.56 16 6 O -0.53 -9.25 16.51 -14.30 -0.24 -9.48 16 7 N -0.72 -8.84 5.02 -60.29 -0.30 -9.14 16 8 C 0.10 1.52 4.80 -4.04 -0.02 1.50 16 9 C 0.11 1.77 0.93 -88.78 -0.08 1.69 16 10 O -0.54 -8.84 13.10 -35.23 -0.46 -9.30 16 11 C -0.13 -2.44 6.26 -24.58 -0.15 -2.60 16 12 C 0.16 3.81 5.88 -2.53 -0.01 3.79 16 13 N -0.60 -15.13 3.39 -170.08 -0.58 -15.71 16 14 C -0.23 -6.25 10.27 -15.06 -0.15 -6.40 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 18 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.12 2.29 5.76 -3.07 -0.02 2.27 16 23 C -0.16 -1.42 5.67 -90.62 -0.51 -1.93 16 24 C -0.16 -1.37 9.88 -26.69 -0.26 -1.64 16 25 C -0.17 -1.23 10.19 -26.69 -0.27 -1.50 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.40 3.96 7.47 -40.82 -0.31 3.66 16 30 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.36 4.32 8.44 45.56 0.38 4.70 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.38 7.96 -51.93 -0.41 0.96 16 35 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.03 0.58 7.82 -51.93 -0.41 0.17 16 39 H 0.02 0.42 8.07 -51.92 -0.42 0.01 16 40 H 0.12 0.93 8.03 -51.93 -0.42 0.51 16 41 H 0.11 1.07 7.06 -51.93 -0.37 0.70 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -33.81 359.08 -8.16 -41.97 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.42 Total: 6.35 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.65 Total: 3.76 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.32 Total: -50.91 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.15 Total: -23.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.81 -8.16 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754748325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.951 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds