Wall clock time and date at job start Fri Apr 10 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99924 * 2 1 4 4 H 1.09006 * 109.47395 * 30.00034 * 3 2 1 5 5 C 1.50702 * 109.47511 * 270.00261 * 3 2 1 6 6 O 1.21282 * 119.99684 * 354.99798 * 5 3 2 7 7 N 1.34769 * 120.00461 * 174.99734 * 5 3 2 8 8 C 1.46500 * 120.00237 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 O 1.42903 * 110.63860 * 66.68903 * 9 8 7 11 11 C 1.55163 * 110.71776 * 190.02094 * 9 8 7 12 12 C 1.54907 * 101.57736 * 153.86275 * 11 9 8 13 13 N 1.47419 * 104.83507 * 322.99305 * 12 11 9 14 14 C 1.36940 * 125.64886 * 204.16172 * 13 12 11 15 15 H 1.07996 * 120.00387 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99833 * 359.96123 * 14 13 12 17 17 N 1.31620 * 120.00267 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47296 * 90.00126 * 18 16 14 20 20 H 1.48504 * 109.47057 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47207 * 329.99872 * 18 16 14 22 22 C 1.47017 * 108.70543 * 24.12815 * 13 12 11 23 23 C 1.52996 * 109.47420 * 150.00139 * 3 2 1 24 24 C 1.53009 * 117.49497 * 8.74949 * 23 3 2 25 25 C 1.53004 * 117.50035 * 300.09173 * 23 3 2 26 26 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 299.99484 * 1 2 3 28 28 H 1.08993 * 109.47070 * 59.99956 * 1 2 3 29 29 H 0.97010 * 119.99854 * 0.02562 * 7 5 3 30 30 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 31 31 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 32 32 H 0.96695 * 114.00286 * 300.69612 * 10 9 8 33 33 H 1.08999 * 111.00623 * 271.94003 * 11 9 8 34 34 H 1.09000 * 111.00045 * 35.79396 * 11 9 8 35 35 H 1.09001 * 110.36318 * 204.15216 * 12 11 9 36 36 H 1.09000 * 110.36707 * 81.83205 * 12 11 9 37 37 H 0.97001 * 120.00327 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.88349 * 239.52192 * 22 13 12 39 39 H 1.09008 * 109.88383 * 118.35396 * 22 13 12 40 40 H 1.09004 * 115.55449 * 154.41658 * 23 3 2 41 41 H 1.08999 * 117.49820 * 359.97438 * 24 23 3 42 42 H 1.09000 * 117.49907 * 145.02607 * 24 23 3 43 43 H 1.09000 * 117.49831 * 214.97641 * 25 23 3 44 44 H 1.09007 * 117.49534 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6588 3.0124 -1.6686 8 6 2.8568 3.4588 -3.0498 9 6 3.3628 4.9028 -3.0515 10 8 4.6740 4.9777 -2.4882 11 6 3.3439 5.4893 -4.4879 12 6 3.2040 7.0055 -4.2027 13 7 2.3088 7.0888 -3.0345 14 6 1.5320 8.1656 -2.6995 15 1 0.9069 8.1277 -1.8196 16 6 1.5482 9.3061 -3.4907 17 7 2.3106 9.3527 -4.5626 18 14 0.4891 10.7753 -3.0332 19 1 1.2584 11.6824 -2.1442 20 1 0.0968 11.5054 -4.2654 21 1 -0.7297 10.3061 -2.3266 22 6 2.3874 5.8241 -2.2891 23 6 3.3589 1.2633 0.7212 24 6 3.9153 -0.1111 1.0990 25 6 3.3639 0.8167 2.1846 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.8474 3.6152 -0.9322 30 1 1.9108 3.4044 -3.5884 31 1 3.5901 2.8166 -3.5376 32 1 4.7293 4.6592 -1.5769 33 1 4.2763 5.2743 -5.0100 34 1 2.4879 5.1170 -5.0506 35 1 2.7590 7.5129 -5.0587 36 1 4.1762 7.4385 -3.9673 37 1 2.3222 10.1498 -5.1152 38 1 1.4019 5.3609 -2.2398 39 1 2.7629 6.0096 -1.2827 40 1 4.0735 2.0321 0.4272 41 1 3.3203 -0.9851 0.8341 42 1 4.9960 -0.2462 1.0540 43 1 4.0820 1.2914 2.8532 44 1 2.4062 0.5532 2.6336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754748325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:34 Heat of formation + Delta-G solvation = -96.983424 kcal Electronic energy + Delta-G solvation = -25098.418781 eV Core-core repulsion = 21437.863862 eV Total energy + Delta-G solvation = -3660.554919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43717 -40.22400 -38.78387 -37.09967 -36.76883 -35.35838 -33.99278 -31.56040 -30.58026 -29.12457 -27.59274 -26.91260 -25.10885 -23.20474 -22.73119 -22.09997 -21.35535 -21.14162 -19.22231 -18.86221 -17.90301 -17.60362 -17.18913 -16.75605 -16.45764 -16.22612 -15.91891 -15.58898 -15.51137 -15.32810 -14.79907 -14.60277 -14.39312 -14.04227 -13.87376 -13.62631 -13.30402 -12.93340 -12.77388 -12.55552 -12.43499 -12.36913 -12.23961 -12.10031 -12.01780 -11.91460 -11.72589 -11.55696 -11.34324 -11.09449 -10.94699 -10.74781 -10.27100 -10.22750 -8.91469 -7.78113 -5.23335 1.47258 1.47521 1.49136 1.57782 1.91601 2.48697 2.69294 2.95232 3.14933 3.31761 3.40946 3.55880 3.69688 3.79731 3.90157 3.92728 3.95529 4.16383 4.25748 4.39465 4.45818 4.49648 4.54011 4.58964 4.66081 4.78191 4.81131 4.88444 4.93661 4.97658 5.02588 5.07119 5.24459 5.27030 5.38232 5.45941 5.60007 5.78640 5.95239 6.28256 6.42599 6.79343 7.08559 7.12581 7.75907 8.39585 9.24023 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020957 B = 0.003371 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.778522 B = 8303.377083 C = 8628.814104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.373 6.373 3 C 0.107 3.893 4 H 0.114 0.886 5 C 0.494 3.506 6 O -0.572 6.572 7 N -0.712 5.712 8 C 0.119 3.881 9 C 0.127 3.873 10 O -0.554 6.554 11 C -0.122 4.122 12 C 0.160 3.840 13 N -0.623 5.623 14 C -0.241 4.241 15 H 0.085 0.915 16 C -0.067 4.067 17 N -0.949 5.949 18 Si 0.981 3.019 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.113 3.887 23 C -0.171 4.171 24 C -0.172 4.172 25 C -0.149 4.149 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.413 0.587 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.386 0.614 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.074 0.926 36 H -0.015 1.015 37 H 0.247 0.753 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -17.460 13.444 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.291 6.291 3 C 0.045 3.955 4 H 0.132 0.868 5 C 0.281 3.719 6 O -0.450 6.450 7 N -0.367 5.367 8 C -0.006 4.006 9 C 0.085 3.915 10 O -0.361 6.361 11 C -0.160 4.160 12 C 0.035 3.965 13 N -0.349 5.349 14 C -0.369 4.369 15 H 0.103 0.897 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.809 3.191 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.192 1.192 22 C -0.012 4.012 23 C -0.189 4.189 24 C -0.209 4.209 25 C -0.186 4.186 26 H 0.119 0.881 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.250 0.750 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.235 0.765 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.003 0.997 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.150 0.850 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.676 -17.750 12.150 21.521 hybrid contribution -0.662 1.340 0.478 1.569 sum 0.014 -16.410 12.628 20.706 Atomic orbital electron populations 1.23022 0.79542 1.04215 1.00484 1.87954 1.21269 1.25579 1.94263 1.21549 0.96912 0.86958 0.90063 0.86810 1.21839 0.75973 0.81228 0.92891 1.90694 1.51747 1.54935 1.47670 1.45904 1.67530 1.14418 1.08855 1.21767 1.01374 0.93600 0.83848 1.22180 0.82666 0.91598 0.95071 1.86599 1.28178 1.88057 1.33264 1.22911 1.02544 0.96694 0.93894 1.21643 0.91258 0.91830 0.91742 1.44700 1.49547 1.12829 1.27850 1.19474 1.17524 0.92153 1.07792 0.89749 1.25661 1.01487 1.01051 0.97770 1.70052 1.43650 1.28458 1.17743 0.85035 0.78423 0.78967 0.76629 1.21405 1.22123 1.19182 1.22121 0.97148 0.87017 0.94960 1.22346 0.95827 1.01516 0.99233 1.22913 1.01077 0.93586 1.03314 1.23050 1.03616 1.02129 0.89779 0.88065 0.91512 0.95188 0.75023 0.91322 0.90545 0.76495 0.89662 0.89672 0.90765 0.99700 0.94314 0.94480 0.94355 0.85023 0.89066 0.87987 0.86655 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.62 16 2 O -0.37 -8.06 8.24 -129.99 -1.07 -9.13 16 3 C 0.11 1.98 2.87 29.85 0.09 2.06 16 4 H 0.11 1.56 7.79 -2.38 -0.02 1.54 16 5 C 0.49 12.42 7.12 87.66 0.62 13.04 16 6 O -0.57 -19.77 16.51 15.95 0.26 -19.51 16 7 N -0.71 -15.63 5.02 -463.06 -2.32 -17.96 16 8 C 0.12 3.24 4.80 86.38 0.41 3.65 16 9 C 0.13 4.03 0.93 -9.60 -0.01 4.03 16 10 O -0.55 -16.71 13.10 -148.98 -1.95 -18.66 16 11 C -0.12 -4.57 6.26 31.99 0.20 -4.37 16 12 C 0.16 8.00 5.88 86.86 0.51 8.52 16 13 N -0.62 -31.42 3.39 -692.01 -2.35 -33.77 16 14 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 17 N -0.95 -56.57 10.09 21.65 0.22 -56.35 16 18 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C 0.11 4.25 5.76 86.73 0.50 4.75 16 23 C -0.17 -2.52 5.67 -10.79 -0.06 -2.58 16 24 C -0.17 -2.66 9.88 30.62 0.30 -2.36 16 25 C -0.15 -1.71 10.19 30.62 0.31 -1.40 16 26 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 0.78 8.08 -2.39 -0.02 0.77 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.41 6.82 7.47 -92.70 -0.69 6.13 16 30 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.39 7.85 8.44 -74.06 -0.62 7.23 16 33 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.08 3.04 7.96 -2.39 -0.02 3.02 16 35 H 0.07 4.21 5.87 -2.39 -0.01 4.19 16 36 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 39 H 0.04 1.34 8.07 -2.38 -0.02 1.32 16 40 H 0.13 1.60 8.03 -2.39 -0.02 1.58 16 41 H 0.09 1.73 7.06 -2.39 -0.02 1.71 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -74.68 359.08 -0.06 -74.74 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.31 Total: 22.31 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.43 Total: 11.30 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -4.46 Total: -108.08 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -2.76 Total: -47.29 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.68 -0.06 -74.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754748325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.240 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds