Wall clock time and date at job start Fri Apr 10 2020 17:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99957 * 2 1 4 4 H 1.09001 * 109.47308 * 323.54385 * 3 2 1 5 5 C 1.50702 * 109.47193 * 83.54419 * 3 2 1 6 6 O 1.21282 * 119.99688 * 5.00339 * 5 3 2 7 7 N 1.34771 * 119.99770 * 184.99565 * 5 3 2 8 8 C 1.46504 * 119.99681 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47048 * 180.02562 * 8 7 5 10 10 O 1.42900 * 110.63959 * 66.68986 * 9 8 7 11 11 C 1.55161 * 110.71947 * 190.02562 * 9 8 7 12 12 C 1.54910 * 101.58092 * 153.86638 * 11 9 8 13 13 N 1.47422 * 104.83138 * 322.98892 * 12 11 9 14 14 C 1.36935 * 125.64718 * 204.16767 * 13 12 11 15 15 H 1.08001 * 120.00166 * 154.91981 * 14 13 12 16 16 C 1.38810 * 120.00216 * 334.91255 * 14 13 12 17 17 N 1.31621 * 120.00375 * 156.82435 * 16 14 13 18 18 Si 1.86797 * 119.99995 * 336.83336 * 16 14 13 19 19 H 1.48494 * 109.47404 * 87.99735 * 18 16 14 20 20 H 1.48497 * 109.47384 * 208.00189 * 18 16 14 21 21 H 1.48501 * 109.46953 * 327.99817 * 18 16 14 22 22 C 1.47024 * 108.70635 * 24.13163 * 13 12 11 23 23 C 1.53001 * 109.46992 * 203.54655 * 3 2 1 24 24 C 1.53004 * 117.49988 * 123.51552 * 23 3 2 25 25 C 1.53001 * 117.49980 * 54.85248 * 23 3 2 26 26 H 1.09007 * 109.46938 * 59.77143 * 1 2 3 27 27 H 1.08997 * 109.46938 * 299.77801 * 1 2 3 28 28 H 1.08995 * 109.47313 * 179.77154 * 1 2 3 29 29 H 0.96995 * 120.00812 * 0.02562 * 7 5 3 30 30 H 1.09003 * 109.47296 * 300.00494 * 8 7 5 31 31 H 1.09002 * 109.47215 * 60.00719 * 8 7 5 32 32 H 0.96699 * 113.99841 * 300.70049 * 10 9 8 33 33 H 1.08995 * 111.00253 * 271.94126 * 11 9 8 34 34 H 1.09003 * 111.00432 * 35.78894 * 11 9 8 35 35 H 1.08998 * 110.36280 * 204.15087 * 12 11 9 36 36 H 1.08992 * 110.36620 * 81.83119 * 12 11 9 37 37 H 0.96999 * 120.00334 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.87967 * 239.52680 * 22 13 12 39 39 H 1.08990 * 109.88488 * 118.35245 * 22 13 12 40 40 H 1.09002 * 115.55046 * 269.17857 * 23 3 2 41 41 H 1.08996 * 117.49842 * 359.97438 * 24 23 3 42 42 H 1.09000 * 117.49698 * 145.02227 * 24 23 3 43 43 H 1.09005 * 117.49537 * 214.97972 * 25 23 3 44 44 H 1.08992 * 117.49678 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.4029 1.9736 -0.6106 5 6 2.0686 1.8294 1.4118 6 8 1.7382 1.1179 2.3368 7 7 2.4881 3.0884 1.6465 8 6 2.5454 3.5975 3.0190 9 6 3.0507 5.0417 3.0067 10 8 2.1013 5.9021 2.3738 11 6 3.3621 5.5267 4.4472 12 6 4.4302 6.6174 4.1841 13 7 5.2370 6.0937 3.0669 14 6 6.5306 6.4428 2.7844 15 1 7.1674 5.7611 2.2401 16 6 7.0237 7.6728 3.1975 17 7 8.3196 7.8447 3.3505 18 14 5.8479 9.0842 3.5367 19 1 5.3951 9.0227 4.9495 20 1 6.5411 10.3750 3.2948 21 1 4.6728 8.9769 2.6351 22 6 4.4230 5.1341 2.3066 23 6 3.4257 1.2335 -0.5763 24 6 3.7446 2.1227 -1.7799 25 6 3.5928 0.6105 -1.9637 26 1 -0.3633 0.5174 -0.8880 27 1 -0.3633 0.5104 0.8920 28 1 -0.3634 -1.0276 -0.0041 29 1 2.7522 3.6576 0.9068 30 1 1.5493 3.5652 3.4605 31 1 3.2239 2.9800 3.6076 32 1 1.9034 5.6632 1.4579 33 1 2.4754 5.9532 4.9161 34 1 3.7709 4.7173 5.0522 35 1 5.0526 6.7596 5.0675 36 1 3.9528 7.5552 3.9004 37 1 8.6641 8.7042 3.6396 38 1 4.9056 4.1567 2.3067 39 1 4.2940 5.4862 1.2833 40 1 4.2210 1.0655 0.1500 41 1 2.9458 2.7586 -2.1614 42 1 4.7497 2.5392 -1.8457 43 1 4.4983 0.0330 -2.1503 44 1 2.6944 0.2516 -2.4657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754748328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:42 Heat of formation + Delta-G solvation = -71.890737 kcal Electronic energy + Delta-G solvation = -25292.031754 eV Core-core repulsion = 21632.564936 eV Total energy + Delta-G solvation = -3659.466818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46835 -39.09151 -37.78770 -36.61517 -35.37869 -34.27258 -32.28692 -30.39123 -29.40638 -28.24027 -26.60745 -25.60622 -23.38727 -22.60490 -21.71622 -21.11167 -20.36761 -20.06588 -18.23481 -17.23000 -16.97492 -16.38386 -16.07222 -15.77588 -15.37637 -15.08954 -14.84749 -14.67086 -14.28862 -14.00898 -13.80750 -13.49822 -13.26451 -13.00415 -12.61928 -12.12789 -11.94744 -11.92024 -11.82581 -11.70321 -11.47606 -11.20950 -11.02962 -10.91039 -10.78997 -10.72346 -10.47574 -10.27853 -10.13504 -9.76346 -9.55303 -9.39738 -9.19330 -8.65504 -7.03562 -6.01196 -3.34856 2.41516 2.84750 3.16786 3.34996 3.47436 3.54284 3.87422 4.23483 4.27460 4.46826 4.52450 4.54167 4.60008 4.75287 4.82804 4.95106 4.98658 5.05525 5.11144 5.16450 5.24859 5.38237 5.39918 5.45487 5.61327 5.63985 5.75533 5.82802 5.83978 5.87785 6.04232 6.14557 6.23728 6.35283 6.38135 6.62146 6.69973 6.72730 7.31475 7.70377 7.73132 8.05947 8.26555 8.78366 9.63514 10.14151 11.14572 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.003877 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.524189 B = 7219.886310 C = 7997.228412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.107 3.893 4 H 0.085 0.915 5 C 0.493 3.507 6 O -0.526 6.526 7 N -0.723 5.723 8 C 0.104 3.896 9 C 0.104 3.896 10 O -0.545 6.545 11 C -0.115 4.115 12 C 0.119 3.881 13 N -0.603 5.603 14 C -0.248 4.248 15 H 0.088 0.912 16 C 0.030 3.970 17 N -0.903 5.903 18 Si 0.879 3.121 19 H -0.285 1.285 20 H -0.301 1.301 21 H -0.273 1.273 22 C 0.113 3.887 23 C -0.158 4.158 24 C -0.170 4.170 25 C -0.157 4.157 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.401 0.599 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.368 0.632 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 -12.017 -9.256 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.045 3.955 4 H 0.102 0.898 5 C 0.278 3.722 6 O -0.402 6.402 7 N -0.377 5.377 8 C -0.020 4.020 9 C 0.062 3.938 10 O -0.349 6.349 11 C -0.153 4.153 12 C -0.006 4.006 13 N -0.330 5.330 14 C -0.375 4.375 15 H 0.106 0.894 16 C -0.170 4.170 17 N -0.546 5.546 18 Si 0.709 3.291 19 H -0.212 1.212 20 H -0.229 1.229 21 H -0.198 1.198 22 C -0.013 4.013 23 C -0.176 4.176 24 C -0.207 4.207 25 C -0.194 4.194 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.235 0.765 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.215 0.785 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.295 -12.301 -7.976 21.186 hybrid contribution -0.624 1.174 -0.649 1.480 sum -15.919 -11.126 -8.625 21.251 Atomic orbital electron populations 1.22867 0.80690 1.03260 1.00052 1.88021 1.19919 1.24735 1.94354 1.21527 0.94841 0.86618 0.92488 0.89771 1.21284 0.77293 0.81625 0.92020 1.90718 1.47455 1.56685 1.45333 1.46011 1.67592 1.14381 1.09724 1.22054 1.02425 0.94341 0.83152 1.22529 0.88630 0.86877 0.95747 1.86603 1.62714 1.55833 1.29792 1.22752 0.99665 1.00175 0.92745 1.21899 0.91925 0.94686 0.92110 1.44648 1.11220 1.49642 1.27470 1.18559 0.83511 0.99635 1.35813 0.89429 1.25151 0.95397 0.97315 0.99155 1.69854 1.11846 1.24638 1.48255 0.86928 0.81183 0.82668 0.78343 1.21180 1.22870 1.19798 1.22023 0.89608 0.94893 0.94744 1.22091 0.95179 1.07869 0.92476 1.23161 1.03848 0.93778 0.99896 1.22851 1.03648 0.95455 0.97433 0.94102 0.93457 0.89182 0.76475 0.90632 0.90082 0.78511 0.90378 0.89549 0.92259 0.95267 0.92597 0.94081 0.94873 0.86584 0.88390 0.87551 0.88274 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 101.05 1.08 1.33 16 2 O -0.35 -4.12 9.76 -55.09 -0.54 -4.66 16 3 C 0.11 1.08 2.74 -27.88 -0.08 1.01 16 4 H 0.08 0.64 7.60 -51.93 -0.39 0.25 16 5 C 0.49 6.30 6.89 -10.99 -0.08 6.22 16 6 O -0.53 -8.84 16.06 -14.31 -0.23 -9.07 16 7 N -0.72 -8.19 5.09 -60.29 -0.31 -8.49 16 8 C 0.10 1.38 4.80 -4.04 -0.02 1.36 16 9 C 0.10 1.58 0.93 -88.78 -0.08 1.50 16 10 O -0.54 -8.08 13.10 -35.23 -0.46 -8.54 16 11 C -0.11 -1.91 6.26 -24.58 -0.15 -2.06 16 12 C 0.12 2.58 4.80 -2.53 -0.01 2.56 16 13 N -0.60 -14.29 3.10 -170.08 -0.53 -14.82 16 14 C -0.25 -6.94 10.52 -15.06 -0.16 -7.10 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.03 0.86 5.42 -17.43 -0.09 0.76 16 17 N -0.90 -27.59 13.97 55.49 0.78 -26.81 16 18 Si 0.88 22.58 24.46 -169.99 -4.16 18.42 16 19 H -0.28 -7.09 6.94 56.52 0.39 -6.70 16 20 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 21 H -0.27 -7.01 6.82 56.52 0.39 -6.62 16 22 C 0.11 2.08 5.76 -3.06 -0.02 2.07 16 23 C -0.16 -1.48 5.41 -90.62 -0.49 -1.97 16 24 C -0.17 -1.26 10.18 -26.69 -0.27 -1.53 16 25 C -0.16 -1.24 10.07 -26.69 -0.27 -1.51 16 26 H 0.04 0.27 8.08 -51.92 -0.42 -0.15 16 27 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.40 3.71 7.47 -40.82 -0.30 3.41 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 32 H 0.37 3.92 8.44 45.56 0.38 4.30 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 35 H 0.06 1.35 7.54 -51.93 -0.39 0.96 16 36 H 0.03 0.68 5.51 -51.93 -0.29 0.40 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 39 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.12 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 42 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -35.08 356.40 -7.14 -42.22 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.42 Total: 3.76 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.64 Total: 2.62 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.06 Total: -50.12 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.23 Total: -22.27 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.16 Total: 18.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.08 -7.14 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754748328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.670 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds