Wall clock time and date at job start Fri Apr 10 2020 17:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99957 * 2 1 4 4 H 1.09001 * 109.47308 * 323.54385 * 3 2 1 5 5 C 1.50702 * 109.47193 * 83.54419 * 3 2 1 6 6 O 1.21282 * 119.99688 * 5.00339 * 5 3 2 7 7 N 1.34771 * 119.99770 * 184.99565 * 5 3 2 8 8 C 1.46504 * 119.99681 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47048 * 180.02562 * 8 7 5 10 10 O 1.42900 * 110.63959 * 66.68986 * 9 8 7 11 11 C 1.55161 * 110.71947 * 190.02562 * 9 8 7 12 12 C 1.54910 * 101.58092 * 153.86638 * 11 9 8 13 13 N 1.47422 * 104.83138 * 322.98892 * 12 11 9 14 14 C 1.36935 * 125.64718 * 204.16767 * 13 12 11 15 15 H 1.08001 * 120.00166 * 154.91981 * 14 13 12 16 16 C 1.38810 * 120.00216 * 334.91255 * 14 13 12 17 17 N 1.31621 * 120.00375 * 156.82435 * 16 14 13 18 18 Si 1.86797 * 119.99995 * 336.83336 * 16 14 13 19 19 H 1.48494 * 109.47404 * 87.99735 * 18 16 14 20 20 H 1.48497 * 109.47384 * 208.00189 * 18 16 14 21 21 H 1.48501 * 109.46953 * 327.99817 * 18 16 14 22 22 C 1.47024 * 108.70635 * 24.13163 * 13 12 11 23 23 C 1.53001 * 109.46992 * 203.54655 * 3 2 1 24 24 C 1.53004 * 117.49988 * 123.51552 * 23 3 2 25 25 C 1.53001 * 117.49980 * 54.85248 * 23 3 2 26 26 H 1.09007 * 109.46938 * 59.77143 * 1 2 3 27 27 H 1.08997 * 109.46938 * 299.77801 * 1 2 3 28 28 H 1.08995 * 109.47313 * 179.77154 * 1 2 3 29 29 H 0.96995 * 120.00812 * 0.02562 * 7 5 3 30 30 H 1.09003 * 109.47296 * 300.00494 * 8 7 5 31 31 H 1.09002 * 109.47215 * 60.00719 * 8 7 5 32 32 H 0.96699 * 113.99841 * 300.70049 * 10 9 8 33 33 H 1.08995 * 111.00253 * 271.94126 * 11 9 8 34 34 H 1.09003 * 111.00432 * 35.78894 * 11 9 8 35 35 H 1.08998 * 110.36280 * 204.15087 * 12 11 9 36 36 H 1.08992 * 110.36620 * 81.83119 * 12 11 9 37 37 H 0.96999 * 120.00334 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.87967 * 239.52680 * 22 13 12 39 39 H 1.08990 * 109.88488 * 118.35245 * 22 13 12 40 40 H 1.09002 * 115.55046 * 269.17857 * 23 3 2 41 41 H 1.08996 * 117.49842 * 359.97438 * 24 23 3 42 42 H 1.09000 * 117.49698 * 145.02227 * 24 23 3 43 43 H 1.09005 * 117.49537 * 214.97972 * 25 23 3 44 44 H 1.08992 * 117.49678 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.4029 1.9736 -0.6106 5 6 2.0686 1.8294 1.4118 6 8 1.7382 1.1179 2.3368 7 7 2.4881 3.0884 1.6465 8 6 2.5454 3.5975 3.0190 9 6 3.0507 5.0417 3.0067 10 8 2.1013 5.9021 2.3738 11 6 3.3621 5.5267 4.4472 12 6 4.4302 6.6174 4.1841 13 7 5.2370 6.0937 3.0669 14 6 6.5306 6.4428 2.7844 15 1 7.1674 5.7611 2.2401 16 6 7.0237 7.6728 3.1975 17 7 8.3196 7.8447 3.3505 18 14 5.8479 9.0842 3.5367 19 1 5.3951 9.0227 4.9495 20 1 6.5411 10.3750 3.2948 21 1 4.6728 8.9769 2.6351 22 6 4.4230 5.1341 2.3066 23 6 3.4257 1.2335 -0.5763 24 6 3.7446 2.1227 -1.7799 25 6 3.5928 0.6105 -1.9637 26 1 -0.3633 0.5174 -0.8880 27 1 -0.3633 0.5104 0.8920 28 1 -0.3634 -1.0276 -0.0041 29 1 2.7522 3.6576 0.9068 30 1 1.5493 3.5652 3.4605 31 1 3.2239 2.9800 3.6076 32 1 1.9034 5.6632 1.4579 33 1 2.4754 5.9532 4.9161 34 1 3.7709 4.7173 5.0522 35 1 5.0526 6.7596 5.0675 36 1 3.9528 7.5552 3.9004 37 1 8.6641 8.7042 3.6396 38 1 4.9056 4.1567 2.3067 39 1 4.2940 5.4862 1.2833 40 1 4.2210 1.0655 0.1500 41 1 2.9458 2.7586 -2.1614 42 1 4.7497 2.5392 -1.8457 43 1 4.4983 0.0330 -2.1503 44 1 2.6944 0.2516 -2.4657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754748328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:42 Heat of formation + Delta-G solvation = -99.641180 kcal Electronic energy + Delta-G solvation = -25293.235103 eV Core-core repulsion = 21632.564936 eV Total energy + Delta-G solvation = -3660.670167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46442 -40.33105 -38.72068 -37.34366 -36.88706 -35.34770 -34.26087 -31.89649 -30.61907 -29.42902 -27.77474 -26.79024 -24.91716 -23.18665 -22.94775 -22.37141 -21.39906 -21.35918 -19.24669 -18.91928 -18.05978 -17.57842 -17.14090 -16.91882 -16.69582 -16.19471 -15.96813 -15.74756 -15.66374 -15.36073 -15.09056 -14.60792 -14.48039 -14.12892 -13.93308 -13.84945 -13.47384 -13.27679 -12.91582 -12.70468 -12.61076 -12.39529 -12.25550 -12.18543 -12.10023 -11.96765 -11.76332 -11.52535 -11.37491 -11.14356 -11.04867 -10.78613 -10.33475 -10.22319 -9.01568 -8.22853 -5.52082 1.30390 1.38211 1.44700 1.49127 1.94091 2.39794 2.45534 2.95229 3.14201 3.17440 3.21597 3.48091 3.59834 3.72201 3.74078 3.79735 3.86920 4.05101 4.18654 4.34072 4.35530 4.38213 4.52633 4.57345 4.62425 4.72117 4.78001 4.82720 4.84809 4.84898 4.93312 5.03893 5.04939 5.15018 5.16989 5.27368 5.29807 5.69647 5.96807 6.08087 6.41630 6.72916 6.74755 7.10878 7.49963 8.09070 8.97032 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.003877 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.524189 B = 7219.886310 C = 7997.228412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.377 6.377 3 C 0.112 3.888 4 H 0.117 0.883 5 C 0.492 3.508 6 O -0.571 6.571 7 N -0.711 5.711 8 C 0.117 3.883 9 C 0.125 3.875 10 O -0.553 6.553 11 C -0.109 4.109 12 C 0.111 3.889 13 N -0.622 5.622 14 C -0.239 4.239 15 H 0.058 0.942 16 C -0.026 4.026 17 N -0.950 5.950 18 Si 0.941 3.059 19 H -0.275 1.275 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.109 3.891 23 C -0.176 4.176 24 C -0.155 4.155 25 C -0.154 4.154 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.413 0.587 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.388 0.612 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 -12.033 -10.443 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.051 3.949 4 H 0.135 0.865 5 C 0.279 3.721 6 O -0.450 6.450 7 N -0.366 5.366 8 C -0.008 4.008 9 C 0.083 3.917 10 O -0.360 6.360 11 C -0.147 4.147 12 C -0.014 4.014 13 N -0.349 5.349 14 C -0.367 4.367 15 H 0.076 0.924 16 C -0.221 4.221 17 N -0.596 5.596 18 Si 0.770 3.230 19 H -0.201 1.201 20 H -0.233 1.233 21 H -0.195 1.195 22 C -0.016 4.016 23 C -0.194 4.194 24 C -0.192 4.192 25 C -0.191 4.191 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.013 -12.320 -9.201 23.684 hybrid contribution 0.217 1.073 -0.328 1.143 sum -17.796 -11.247 -9.529 23.108 Atomic orbital electron populations 1.23016 0.79447 1.04219 1.00565 1.87994 1.21432 1.25756 1.94301 1.21610 0.95660 0.86676 0.90936 0.86527 1.21854 0.76132 0.81338 0.92822 1.90698 1.49571 1.57825 1.46914 1.45884 1.66953 1.14291 1.09441 1.21808 1.02345 0.92567 0.84084 1.22184 0.87095 0.88011 0.94434 1.86573 1.61995 1.55934 1.31512 1.22743 0.98885 0.98990 0.94101 1.21960 0.92664 0.96095 0.90690 1.44752 1.10656 1.50221 1.29298 1.18511 0.85332 0.98881 1.34023 0.92414 1.25723 0.96583 0.99601 1.00238 1.69967 1.13648 1.25123 1.50834 0.85928 0.79023 0.79389 0.78666 1.20077 1.23295 1.19514 1.22215 0.90805 0.93389 0.95159 1.22008 0.94289 1.10312 0.92839 1.23254 1.04450 0.93701 0.97756 1.22928 1.04078 0.96090 0.96026 0.91407 0.94941 0.88236 0.75029 0.89896 0.91163 0.76199 0.88044 0.88297 0.94082 0.96183 0.92706 0.94008 0.93716 0.88775 0.86213 0.87816 0.88260 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.70 113.37 1.21 1.58 16 2 O -0.38 -8.19 9.76 -129.99 -1.27 -9.46 16 3 C 0.11 2.03 2.74 29.85 0.08 2.12 16 4 H 0.12 1.33 7.60 -2.39 -0.02 1.31 16 5 C 0.49 11.78 6.89 87.66 0.60 12.39 16 6 O -0.57 -18.81 16.06 15.95 0.26 -18.55 16 7 N -0.71 -14.41 5.09 -463.05 -2.36 -16.77 16 8 C 0.12 2.79 4.80 86.38 0.41 3.20 16 9 C 0.12 3.45 0.93 -9.60 -0.01 3.44 16 10 O -0.55 -14.30 13.10 -148.98 -1.95 -16.25 16 11 C -0.11 -3.34 6.26 31.99 0.20 -3.14 16 12 C 0.11 4.64 4.80 86.86 0.42 5.05 16 13 N -0.62 -29.07 3.10 -692.01 -2.15 -31.22 16 14 C -0.24 -13.56 10.52 84.03 0.88 -12.68 16 15 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 16 C -0.03 -1.51 5.42 84.86 0.46 -1.05 16 17 N -0.95 -59.51 13.97 21.65 0.30 -59.21 16 18 Si 0.94 47.08 24.46 68.60 1.68 48.76 16 19 H -0.27 -13.11 6.94 99.48 0.69 -12.42 16 20 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 21 H -0.27 -13.22 6.82 99.48 0.68 -12.54 16 22 C 0.11 3.83 5.76 86.73 0.50 4.33 16 23 C -0.18 -3.02 5.41 -10.79 -0.06 -3.08 16 24 C -0.15 -1.89 10.18 30.62 0.31 -1.58 16 25 C -0.15 -2.13 10.07 30.62 0.31 -1.82 16 26 H 0.07 0.68 8.08 -2.38 -0.02 0.66 16 27 H 0.03 0.60 7.65 -2.39 -0.02 0.58 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.41 6.37 7.47 -92.71 -0.69 5.68 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 32 H 0.39 6.61 8.44 -74.06 -0.62 5.98 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.10 2.79 7.96 -2.39 -0.02 2.77 16 35 H 0.04 1.84 7.54 -2.39 -0.02 1.83 16 36 H 0.02 0.90 5.51 -2.39 -0.01 0.89 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.04 1.47 7.82 -2.39 -0.02 1.45 16 39 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 40 H 0.09 2.02 8.07 -2.39 -0.02 2.00 16 41 H 0.12 0.95 8.03 -2.39 -0.02 0.93 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.29 356.40 -0.52 -77.81 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.35 Total: 16.13 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.33 Total: 8.76 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.20 Total: -107.19 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -2.97 Total: -44.26 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.68 Total: 48.76 kcal Total: -77.29 -0.52 -77.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754748328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.833 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds