Wall clock time and date at job start Fri Apr 10 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.69781 * 2 1 4 4 C 1.53191 * 109.58946 * 239.64869 * 2 1 3 5 5 C 1.53039 * 109.31283 * 294.85007 * 4 2 1 6 6 H 1.08998 * 109.46000 * 58.63544 * 5 4 2 7 7 N 1.46494 * 109.46017 * 178.61440 * 5 4 2 8 8 C 1.34781 * 119.99806 * 205.02164 * 7 5 4 9 9 O 1.21282 * 120.00301 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99729 * 180.27610 * 8 7 5 11 11 C 1.53005 * 109.46748 * 179.72873 * 10 8 7 12 12 N 1.46503 * 109.47004 * 179.97438 * 11 10 8 13 13 C 1.34778 * 120.00143 * 179.97438 * 12 11 10 14 14 N 1.34773 * 119.99814 * 179.97438 * 13 12 11 15 15 O 1.21585 * 119.99573 * 0.02562 * 13 12 11 16 16 C 1.53046 * 109.52358 * 298.62658 * 5 4 2 17 17 C 1.53188 * 109.31358 * 61.38566 * 16 5 4 18 18 N 1.46921 * 109.58781 * 120.35422 * 2 1 3 19 19 C 1.36933 * 120.63428 * 246.16135 * 18 2 1 20 20 H 1.08003 * 119.99913 * 331.82258 * 19 18 2 21 21 C 1.38808 * 120.00203 * 151.83231 * 19 18 2 22 22 N 1.31624 * 119.99867 * 343.08604 * 21 19 18 23 23 Si 1.86803 * 120.00213 * 163.08543 * 21 19 18 24 24 H 1.48496 * 109.47091 * 90.00118 * 23 21 19 25 25 H 1.48505 * 109.46966 * 209.99903 * 23 21 19 26 26 H 1.48498 * 109.47157 * 329.99483 * 23 21 19 27 27 H 1.09004 * 109.47358 * 180.34974 * 1 2 3 28 28 H 1.08995 * 109.47560 * 300.35109 * 1 2 3 29 29 H 1.09003 * 109.47483 * 60.35082 * 1 2 3 30 30 H 1.08997 * 109.49876 * 174.89188 * 4 2 1 31 31 H 1.09009 * 109.49585 * 54.79556 * 4 2 1 32 32 H 0.96997 * 120.00508 * 25.02655 * 7 5 4 33 33 H 1.09000 * 109.47082 * 299.72486 * 10 8 7 34 34 H 1.08993 * 109.47533 * 59.72772 * 10 8 7 35 35 H 1.09000 * 109.47013 * 299.99655 * 11 10 8 36 36 H 1.08995 * 109.47601 * 59.99994 * 11 10 8 37 37 H 0.97000 * 119.99563 * 359.97438 * 12 11 10 38 38 H 0.96998 * 120.00452 * 359.97438 * 14 13 12 39 39 H 0.97002 * 119.99855 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.49723 * 181.32797 * 16 5 4 41 41 H 1.09004 * 109.49345 * 301.41949 * 16 5 4 42 42 H 1.09000 * 109.58612 * 185.56708 * 17 16 5 43 43 H 1.08996 * 109.59988 * 65.13120 * 17 16 5 44 44 H 0.97002 * 120.00052 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1703 6 1 0.5565 -2.2814 -1.0992 7 7 2.1024 -2.8975 -2.3755 8 6 1.4748 -4.0155 -2.7913 9 8 0.5282 -4.4471 -2.1679 10 6 1.9529 -4.7325 -4.0276 11 6 1.0790 -5.9643 -4.2728 12 7 1.5434 -6.6610 -5.4750 13 6 0.9195 -7.7822 -5.8874 14 7 1.3463 -8.4227 -6.9937 15 8 -0.0290 -8.2152 -5.2620 16 6 2.2803 -2.8461 0.0633 17 6 1.7692 -2.1411 1.3236 18 7 2.0225 -0.6995 1.1944 19 6 2.7051 -0.0210 2.1686 20 1 3.2770 0.8590 1.9139 21 6 2.6621 -0.4645 3.4832 22 7 1.7278 -1.3106 3.8621 23 14 3.9303 0.1396 4.7146 24 1 3.4307 1.3720 5.3754 25 1 4.1655 -0.9103 5.7383 26 1 5.2027 0.4369 4.0092 27 1 -0.3634 -1.0277 0.0063 28 1 -0.3634 0.5192 0.8868 29 1 -0.3634 0.5084 -0.8931 30 1 3.1297 -0.6501 -1.2914 31 1 1.6074 -0.2783 -2.1369 32 1 2.8593 -2.5523 -2.8743 33 1 1.8854 -4.0627 -4.8850 34 1 2.9884 -5.0432 -3.8899 35 1 1.1465 -6.6340 -3.4154 36 1 0.0434 -5.6536 -4.4105 37 1 2.2998 -6.3152 -5.9741 38 1 2.1023 -8.0767 -7.4933 39 1 0.8971 -9.2295 -7.2908 40 1 2.0128 -3.9020 0.1035 41 1 3.3642 -2.7469 0.0049 42 1 2.2944 -2.5275 2.1970 43 1 0.6987 -2.3157 1.4315 44 1 1.6975 -1.6203 4.7809 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755165133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:13 Heat of formation + Delta-G solvation = -58.520871 kcal Electronic energy + Delta-G solvation = -24440.737832 eV Core-core repulsion = 20814.143526 eV Total energy + Delta-G solvation = -3626.594306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18997 -39.66507 -37.81974 -35.35274 -34.47592 -33.92645 -32.55334 -31.23593 -30.44036 -29.31657 -26.92115 -24.73409 -23.85938 -21.96073 -21.60525 -21.42248 -20.24901 -18.73949 -18.24318 -17.58879 -17.09799 -16.50764 -16.18580 -15.81086 -15.08278 -14.89645 -14.61956 -14.34125 -13.91297 -13.73530 -13.70228 -13.48306 -12.99160 -12.61075 -12.47965 -12.21729 -12.08173 -11.72427 -11.40368 -11.06702 -10.93095 -10.78649 -10.60673 -10.58591 -10.34936 -10.20240 -10.04418 -10.01255 -9.74221 -9.71578 -9.33689 -9.28852 -8.72204 -8.40646 -6.67765 -5.78016 -3.20947 2.52547 2.73735 2.96882 3.36684 3.41271 3.44717 3.46287 4.18106 4.48813 4.50342 4.82179 4.84294 5.17101 5.31214 5.38647 5.41586 5.60150 5.69219 5.78120 5.79641 6.02599 6.07088 6.15304 6.26325 6.31528 6.38783 6.42675 6.46903 6.58357 6.59226 6.66194 6.79935 6.88494 6.95986 7.16527 7.39590 7.63381 7.67107 7.72063 7.80259 8.34295 8.37857 8.46335 9.21810 9.85302 10.42180 11.30246 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.002653 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.380948 B =10550.492047 C =10844.133787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.148 3.852 6 H 0.086 0.914 7 N -0.724 5.724 8 C 0.513 3.487 9 O -0.535 6.535 10 C -0.153 4.153 11 C 0.151 3.849 12 N -0.746 5.746 13 C 0.703 3.297 14 N -0.870 5.870 15 O -0.589 6.589 16 C -0.147 4.147 17 C 0.173 3.827 18 N -0.585 5.585 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.394 0.606 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.395 0.605 38 H 0.395 0.605 39 H 0.414 0.586 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.022 0.978 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -6.699 -22.351 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.104 0.896 7 N -0.374 5.374 8 C 0.297 3.703 9 O -0.411 6.411 10 C -0.194 4.194 11 C 0.027 3.973 12 N -0.403 5.403 13 C 0.401 3.599 14 N -0.438 5.438 15 O -0.466 6.466 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.307 5.307 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.228 0.772 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.228 0.772 38 H 0.223 0.777 39 H 0.246 0.754 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.121 -7.303 -21.019 22.469 hybrid contribution 1.624 0.443 -0.207 1.696 sum 4.745 -6.860 -21.226 22.806 Atomic orbital electron populations 1.22305 0.98690 1.01194 1.00028 1.20441 0.91793 0.95086 0.86553 0.91674 1.22296 1.01088 0.94201 0.99582 1.21120 0.99886 0.91297 0.83168 0.89623 1.46324 1.34635 1.27209 1.29260 1.20220 0.83269 0.81075 0.85720 1.90768 1.27891 1.65379 1.57077 1.21812 1.01754 0.97878 0.97955 1.20914 0.98094 0.91940 0.86352 1.45088 1.36633 1.27677 1.30915 1.15953 0.82442 0.80400 0.81087 1.42991 1.38775 1.32423 1.29609 1.91015 1.29821 1.68203 1.57597 1.22566 1.00072 0.99186 0.96874 1.20744 0.97777 0.82885 0.93877 1.44164 1.63778 1.03449 1.19261 1.19132 1.21867 1.10637 0.86663 0.91734 1.25064 0.97682 0.99969 0.96842 1.70034 1.31725 1.35734 1.16864 0.86329 0.81548 0.77910 0.81141 1.21432 1.21603 1.20549 0.93150 0.92622 0.94523 0.91932 0.92646 0.77239 0.88462 0.88376 0.90425 0.90496 0.77174 0.77696 0.75381 0.92913 0.92741 0.89337 0.96023 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.02 37.15 0.34 -2.77 16 2 C 0.17 3.36 3.29 -67.61 -0.22 3.14 16 3 H 0.07 1.29 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.11 5.02 -26.61 -0.13 -2.24 16 5 C 0.15 2.48 2.21 -67.89 -0.15 2.33 16 6 H 0.09 1.64 5.94 -51.93 -0.31 1.33 16 7 N -0.72 -9.18 5.08 -53.77 -0.27 -9.46 16 8 C 0.51 6.80 7.79 -10.98 -0.09 6.71 16 9 O -0.53 -9.75 15.64 5.56 0.09 -9.67 16 10 C -0.15 -1.23 5.81 -27.88 -0.16 -1.40 16 11 C 0.15 1.60 4.96 -4.04 -0.02 1.58 16 12 N -0.75 -5.83 5.56 -65.22 -0.36 -6.19 16 13 C 0.70 7.27 8.84 -86.92 -0.77 6.50 16 14 N -0.87 -4.65 8.88 27.63 0.25 -4.40 16 15 O -0.59 -9.41 17.18 5.29 0.09 -9.32 16 16 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 17 C 0.17 4.15 4.89 -3.71 -0.02 4.13 16 18 N -0.58 -14.12 2.70 -164.78 -0.44 -14.57 16 19 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 20 H 0.06 1.69 7.89 -52.48 -0.41 1.27 16 21 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 23 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.05 1.00 5.72 -51.93 -0.30 0.71 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 32 H 0.39 3.67 8.60 -40.82 -0.35 3.32 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.39 1.54 8.49 -40.82 -0.35 1.20 16 38 H 0.40 0.72 8.84 -40.82 -0.36 0.36 16 39 H 0.41 1.93 8.93 -40.82 -0.36 1.57 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 43 H 0.02 0.56 7.48 -51.93 -0.39 0.17 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -35.99 354.66 -8.24 -44.23 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.92 Total: 4.95 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.61 Total: 8.06 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.21 Total: -60.03 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.99 -8.24 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755165133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.288 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds