Wall clock time and date at job start Fri Apr 10 2020 17:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.69781 * 2 1 4 4 C 1.53191 * 109.58946 * 239.64869 * 2 1 3 5 5 C 1.53039 * 109.31283 * 294.85007 * 4 2 1 6 6 H 1.08998 * 109.46000 * 58.63544 * 5 4 2 7 7 N 1.46494 * 109.46017 * 178.61440 * 5 4 2 8 8 C 1.34781 * 119.99806 * 205.02164 * 7 5 4 9 9 O 1.21282 * 120.00301 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99729 * 180.27610 * 8 7 5 11 11 C 1.53005 * 109.46748 * 179.72873 * 10 8 7 12 12 N 1.46503 * 109.47004 * 179.97438 * 11 10 8 13 13 C 1.34778 * 120.00143 * 179.97438 * 12 11 10 14 14 N 1.34773 * 119.99814 * 179.97438 * 13 12 11 15 15 O 1.21585 * 119.99573 * 0.02562 * 13 12 11 16 16 C 1.53046 * 109.52358 * 298.62658 * 5 4 2 17 17 C 1.53188 * 109.31358 * 61.38566 * 16 5 4 18 18 N 1.46921 * 109.58781 * 120.35422 * 2 1 3 19 19 C 1.36933 * 120.63428 * 246.16135 * 18 2 1 20 20 H 1.08003 * 119.99913 * 331.82258 * 19 18 2 21 21 C 1.38808 * 120.00203 * 151.83231 * 19 18 2 22 22 N 1.31624 * 119.99867 * 343.08604 * 21 19 18 23 23 Si 1.86803 * 120.00213 * 163.08543 * 21 19 18 24 24 H 1.48496 * 109.47091 * 90.00118 * 23 21 19 25 25 H 1.48505 * 109.46966 * 209.99903 * 23 21 19 26 26 H 1.48498 * 109.47157 * 329.99483 * 23 21 19 27 27 H 1.09004 * 109.47358 * 180.34974 * 1 2 3 28 28 H 1.08995 * 109.47560 * 300.35109 * 1 2 3 29 29 H 1.09003 * 109.47483 * 60.35082 * 1 2 3 30 30 H 1.08997 * 109.49876 * 174.89188 * 4 2 1 31 31 H 1.09009 * 109.49585 * 54.79556 * 4 2 1 32 32 H 0.96997 * 120.00508 * 25.02655 * 7 5 4 33 33 H 1.09000 * 109.47082 * 299.72486 * 10 8 7 34 34 H 1.08993 * 109.47533 * 59.72772 * 10 8 7 35 35 H 1.09000 * 109.47013 * 299.99655 * 11 10 8 36 36 H 1.08995 * 109.47601 * 59.99994 * 11 10 8 37 37 H 0.97000 * 119.99563 * 359.97438 * 12 11 10 38 38 H 0.96998 * 120.00452 * 359.97438 * 14 13 12 39 39 H 0.97002 * 119.99855 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.49723 * 181.32797 * 16 5 4 41 41 H 1.09004 * 109.49345 * 301.41949 * 16 5 4 42 42 H 1.09000 * 109.58612 * 185.56708 * 17 16 5 43 43 H 1.08996 * 109.59988 * 65.13120 * 17 16 5 44 44 H 0.97002 * 120.00052 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1703 6 1 0.5565 -2.2814 -1.0992 7 7 2.1024 -2.8975 -2.3755 8 6 1.4748 -4.0155 -2.7913 9 8 0.5282 -4.4471 -2.1679 10 6 1.9529 -4.7325 -4.0276 11 6 1.0790 -5.9643 -4.2728 12 7 1.5434 -6.6610 -5.4750 13 6 0.9195 -7.7822 -5.8874 14 7 1.3463 -8.4227 -6.9937 15 8 -0.0290 -8.2152 -5.2620 16 6 2.2803 -2.8461 0.0633 17 6 1.7692 -2.1411 1.3236 18 7 2.0225 -0.6995 1.1944 19 6 2.7051 -0.0210 2.1686 20 1 3.2770 0.8590 1.9139 21 6 2.6621 -0.4645 3.4832 22 7 1.7278 -1.3106 3.8621 23 14 3.9303 0.1396 4.7146 24 1 3.4307 1.3720 5.3754 25 1 4.1655 -0.9103 5.7383 26 1 5.2027 0.4369 4.0092 27 1 -0.3634 -1.0277 0.0063 28 1 -0.3634 0.5192 0.8868 29 1 -0.3634 0.5084 -0.8931 30 1 3.1297 -0.6501 -1.2914 31 1 1.6074 -0.2783 -2.1369 32 1 2.8593 -2.5523 -2.8743 33 1 1.8854 -4.0627 -4.8850 34 1 2.9884 -5.0432 -3.8899 35 1 1.1465 -6.6340 -3.4154 36 1 0.0434 -5.6536 -4.4105 37 1 2.2998 -6.3152 -5.9741 38 1 2.1023 -8.0767 -7.4933 39 1 0.8971 -9.2295 -7.2908 40 1 2.0128 -3.9020 0.1035 41 1 3.3642 -2.7469 0.0049 42 1 2.2944 -2.5275 2.1970 43 1 0.6987 -2.3157 1.4315 44 1 1.6975 -1.6203 4.7809 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755165133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:12 Heat of formation + Delta-G solvation = -89.653221 kcal Electronic energy + Delta-G solvation = -24442.087832 eV Core-core repulsion = 20814.143526 eV Total energy + Delta-G solvation = -3627.944306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17820 -40.68835 -39.33165 -36.29717 -35.89864 -34.63846 -34.29418 -32.59642 -31.83640 -30.76326 -28.50635 -26.28607 -25.15003 -23.66404 -23.02247 -22.21179 -21.37083 -20.06462 -19.31977 -18.70125 -18.29463 -17.65328 -17.29411 -16.99305 -16.53593 -16.03451 -15.75713 -15.50303 -15.44079 -15.13673 -14.96602 -14.70948 -14.43398 -14.11210 -14.07858 -13.83356 -13.13726 -12.95251 -12.84610 -12.61452 -12.55408 -12.45220 -12.25528 -12.03556 -11.99607 -11.74983 -11.56662 -11.46774 -11.12794 -10.77692 -10.74307 -10.54344 -10.02336 -9.91729 -8.66805 -7.84668 -5.30054 1.47456 1.49108 1.58480 1.70822 1.78121 2.16951 2.43530 2.52774 3.31226 3.59653 3.65034 3.76949 3.86527 4.08387 4.10841 4.17112 4.33081 4.47529 4.54390 4.56804 4.72262 4.79723 4.86093 4.90103 4.94588 4.98007 5.12221 5.17845 5.18512 5.35728 5.42453 5.46259 5.53100 5.64194 5.69531 5.77822 5.92217 6.04869 6.42164 6.67899 7.14661 7.16884 7.38688 7.67345 7.89302 8.41604 9.21941 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.002653 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.380948 B =10550.492047 C =10844.133787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.159 3.841 6 H 0.059 0.941 7 N -0.708 5.708 8 C 0.507 3.493 9 O -0.593 6.593 10 C -0.131 4.131 11 C 0.156 3.844 12 N -0.726 5.726 13 C 0.694 3.306 14 N -0.844 5.844 15 O -0.654 6.654 16 C -0.132 4.132 17 C 0.184 3.816 18 N -0.599 5.599 19 C -0.255 4.255 20 H 0.073 0.927 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.266 1.266 27 H 0.032 0.968 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.418 0.582 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.419 0.581 38 H 0.417 0.583 39 H 0.420 0.580 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.051 0.949 43 H -0.013 1.013 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -5.527 -26.075 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.089 0.911 4 C -0.155 4.155 5 C 0.054 3.946 6 H 0.077 0.923 7 N -0.360 5.360 8 C 0.294 3.706 9 O -0.473 6.473 10 C -0.171 4.171 11 C 0.030 3.970 12 N -0.384 5.384 13 C 0.392 3.608 14 N -0.414 5.414 15 O -0.536 6.536 16 C -0.172 4.172 17 C 0.057 3.943 18 N -0.322 5.322 19 C -0.386 4.386 20 H 0.091 0.909 21 C -0.250 4.250 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.213 1.213 25 H -0.225 1.225 26 H -0.191 1.191 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.255 0.745 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.257 0.743 38 H 0.248 0.752 39 H 0.253 0.747 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.005 0.995 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.942 -6.087 -24.874 26.288 hybrid contribution 0.742 0.076 0.882 1.155 sum 6.684 -6.011 -23.992 25.621 Atomic orbital electron populations 1.22196 0.98446 1.00165 1.00514 1.20741 0.92025 0.95613 0.86497 0.91115 1.22112 1.01978 0.92759 0.98665 1.20681 0.98130 0.92197 0.83567 0.92292 1.45992 1.35233 1.26876 1.27852 1.21151 0.82184 0.80646 0.86612 1.90767 1.30584 1.66761 1.59173 1.21722 1.02396 0.96577 0.96416 1.20631 0.97578 0.92567 0.86201 1.44730 1.36892 1.26732 1.30065 1.16282 0.81948 0.80876 0.81694 1.42736 1.38852 1.31855 1.27921 1.90978 1.32810 1.69961 1.59839 1.22313 1.00401 0.98106 0.96359 1.20412 0.95263 0.83808 0.94816 1.44381 1.64108 1.03546 1.20143 1.19532 1.21409 1.10388 0.87249 0.90917 1.25846 0.99554 1.00802 0.98830 1.70216 1.33789 1.37725 1.16716 0.85300 0.79695 0.76888 0.78691 1.21319 1.22488 1.19051 0.94898 0.95475 0.90617 0.90538 0.88879 0.74463 0.84172 0.84751 0.93840 0.93397 0.74307 0.75196 0.74747 0.94065 0.91871 0.93052 0.99504 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 9.02 71.98 0.65 -5.18 16 2 C 0.16 6.06 3.29 44.97 0.15 6.20 16 3 H 0.07 2.63 7.93 -2.38 -0.02 2.61 16 4 C -0.12 -3.31 5.02 30.67 0.15 -3.15 16 5 C 0.16 5.08 2.21 45.02 0.10 5.18 16 6 H 0.06 2.26 5.94 -2.39 -0.01 2.24 16 7 N -0.71 -15.65 5.08 -442.40 -2.25 -17.90 16 8 C 0.51 12.42 7.79 87.66 0.68 13.11 16 9 O -0.59 -22.01 15.64 -3.04 -0.05 -22.05 16 10 C -0.13 -1.61 5.81 29.85 0.17 -1.43 16 11 C 0.16 3.13 4.96 86.38 0.43 3.56 16 12 N -0.73 -9.61 5.56 -478.53 -2.66 -12.27 16 13 C 0.69 13.54 8.84 179.06 1.58 15.13 16 14 N -0.84 -7.07 8.88 -184.75 -1.64 -8.71 16 15 O -0.65 -21.43 17.18 -3.98 -0.07 -21.50 16 16 C -0.13 -5.17 5.65 30.67 0.17 -5.00 16 17 C 0.18 9.19 4.89 86.36 0.42 9.62 16 18 N -0.60 -29.27 2.70 -675.24 -1.82 -31.10 16 19 C -0.26 -13.73 9.58 84.03 0.81 -12.93 16 20 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 21 C -0.06 -3.10 4.92 84.86 0.42 -2.68 16 22 N -0.94 -56.86 11.20 21.65 0.24 -56.62 16 23 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H 0.03 1.34 5.72 -2.38 -0.01 1.32 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.42 5.56 8.60 -92.71 -0.80 4.76 16 33 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.42 1.43 8.49 -92.71 -0.79 0.64 16 38 H 0.42 0.03 8.84 -92.71 -0.82 -0.79 16 39 H 0.42 3.13 8.93 -92.71 -0.83 2.31 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 43 H -0.01 -0.73 7.48 -2.39 -0.02 -0.75 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -86.89 354.66 -2.66 -89.55 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -2.18 Total: 11.27 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.74 Total: 22.42 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -8.13 Total: -126.60 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.12 Total: -43.56 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -86.89 -2.66 -89.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755165133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.103 kcal (2) G-P(sol) polarization free energy of solvation -86.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds