Wall clock time and date at job start Fri Apr 10 2020 17:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00022 * 2 1 4 4 C 1.52997 * 109.47046 * 90.00178 * 3 2 1 5 5 C 1.52996 * 109.47627 * 60.00035 * 4 3 2 6 6 C 1.52998 * 109.47118 * 299.99613 * 4 3 2 7 7 C 1.53004 * 109.46997 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47534 * 179.97438 * 7 4 3 9 9 C 1.36931 * 120.00458 * 179.97438 * 8 7 4 10 10 H 1.08002 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00429 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99535 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00484 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 180.02562 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00542 * 13 11 9 16 16 H 1.48504 * 109.46636 * 60.00101 * 13 11 9 17 17 C 1.34779 * 119.99836 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99887 * 179.97438 * 17 2 1 19 19 C 1.50703 * 119.99940 * 0.02562 * 17 2 1 20 20 H 1.08994 * 110.49162 * 319.29537 * 19 17 2 21 21 C 1.54105 * 110.55002 * 81.99868 * 19 17 2 22 22 N 1.47052 * 103.86364 * 118.59252 * 21 19 17 23 23 C 1.33942 * 109.17826 * 359.97438 * 22 21 19 24 24 O 1.21593 * 123.03917 * 179.97438 * 23 22 21 25 25 N 1.34257 * 113.96388 * 0.08719 * 23 22 21 26 26 H 1.08996 * 109.47183 * 90.00518 * 1 2 3 27 27 H 1.09006 * 109.47028 * 210.00292 * 1 2 3 28 28 H 1.08997 * 109.46792 * 329.99899 * 1 2 3 29 29 H 1.08998 * 109.46827 * 329.99613 * 3 2 1 30 30 H 1.09000 * 109.46858 * 210.00465 * 3 2 1 31 31 H 1.08996 * 109.47637 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46562 * 300.00030 * 5 4 3 33 33 H 1.09000 * 109.46797 * 59.99395 * 5 4 3 34 34 H 1.09006 * 109.47458 * 300.00231 * 6 4 3 35 35 H 1.09004 * 109.47239 * 60.00361 * 6 4 3 36 36 H 1.08996 * 109.47462 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.46846 * 59.99452 * 7 4 3 38 38 H 1.09000 * 109.46887 * 300.00275 * 7 4 3 39 39 H 0.97000 * 119.99459 * 359.97438 * 8 7 4 40 40 H 0.97005 * 119.99717 * 179.97438 * 12 11 9 41 41 H 1.09004 * 110.54737 * 237.18935 * 21 19 17 42 42 H 1.08999 * 110.54560 * 359.85255 * 21 19 17 43 43 H 0.97002 * 125.40624 * 179.97438 * 22 21 19 44 44 H 0.97003 * 125.58087 * 179.91385 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2795 0.6441 2.1638 6 6 1.1157 1.8934 2.1637 7 6 3.2182 3.0351 1.4425 8 7 3.4619 3.4583 2.8236 9 6 4.1358 4.6238 3.0738 10 1 4.4874 5.2312 2.2529 11 6 4.3663 5.0251 4.3825 12 7 3.9374 4.2851 5.3829 13 14 5.2863 6.6146 4.7238 14 1 5.4009 6.8150 6.1907 15 1 6.6442 6.5384 4.1276 16 1 4.5457 7.7536 4.1244 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4723 0.0005 20 1 0.5240 -2.4156 0.6660 21 6 0.9415 -2.8407 -1.4285 22 7 1.6240 -4.1164 -1.6917 23 6 2.3489 -4.4572 -0.6182 24 8 3.0163 -5.4721 -0.5640 25 7 2.2706 -3.5786 0.3940 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6085 2.0283 -0.5139 30 1 3.1499 1.1384 -0.5139 31 1 3.4615 0.9590 3.1913 32 1 2.7344 -0.2998 2.1637 33 1 4.2318 0.5138 1.6499 34 1 0.5266 2.6531 1.6499 35 1 0.5707 0.9494 2.1638 36 1 1.2973 2.2084 3.1912 37 1 2.6295 3.7949 0.9284 38 1 4.1706 2.9043 0.9287 39 1 3.1458 2.9130 3.5608 40 1 4.0988 4.5653 6.2975 41 1 -0.1401 -2.9693 -1.4720 42 1 1.2639 -2.0783 -2.1377 43 1 1.5594 -4.6294 -2.5123 44 1 2.7245 -3.6590 1.2475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755284029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:15 Heat of formation + Delta-G solvation = -61.014553 kcal Electronic energy + Delta-G solvation = -25307.692610 eV Core-core repulsion = 21680.990170 eV Total energy + Delta-G solvation = -3626.702440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40322 -40.82313 -38.72924 -37.31244 -36.43257 -34.87553 -33.98477 -32.26436 -30.43543 -28.77941 -28.06984 -27.27543 -26.68072 -24.90392 -23.88349 -22.81575 -20.73087 -19.83001 -19.14533 -18.90507 -18.44415 -17.41129 -17.20265 -16.81271 -16.53557 -16.38927 -15.58622 -15.52732 -15.42689 -15.05525 -14.89850 -14.59778 -14.33911 -14.09054 -13.86092 -13.77261 -13.65214 -13.28091 -13.01883 -12.94484 -12.73269 -12.50885 -12.40296 -12.23680 -12.13189 -11.66288 -11.62142 -11.54826 -11.49496 -11.17782 -10.92276 -10.50952 -9.78817 -9.53745 -8.96678 -7.94470 -5.21918 1.44426 1.46332 1.49415 1.55352 1.73424 1.95113 2.17367 2.56655 3.05110 3.33261 3.38724 3.43116 3.87376 3.92742 3.94467 3.99922 4.28995 4.33618 4.47529 4.50850 4.56817 4.67604 4.71227 4.74745 4.85528 4.91057 4.94724 4.97632 5.10515 5.17890 5.20589 5.22792 5.46325 5.49487 5.57335 5.61090 5.89602 6.20355 6.28186 6.28981 6.46217 7.17823 7.34771 7.51692 8.12772 8.35919 9.29054 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.003061 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.645484 B = 9144.127338 C = 9534.397155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.596 5.596 3 C 0.136 3.864 4 C -0.077 4.077 5 C -0.108 4.108 6 C -0.126 4.126 7 C 0.162 3.838 8 N -0.739 5.739 9 C -0.245 4.245 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.973 3.027 14 H -0.295 1.295 15 H -0.282 1.282 16 H -0.275 1.275 17 C 0.493 3.507 18 O -0.568 6.568 19 C 0.103 3.897 20 H 0.157 0.843 21 C 0.108 3.892 22 N -0.728 5.728 23 C 0.694 3.306 24 O -0.641 6.641 25 N -0.719 5.719 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.030 0.970 38 H 0.004 0.996 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.146 0.854 42 H 0.093 0.907 43 H 0.441 0.559 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.285 -12.661 -16.572 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.328 5.328 3 C 0.012 3.988 4 C -0.078 4.078 5 C -0.166 4.166 6 C -0.183 4.183 7 C 0.035 3.965 8 N -0.383 5.383 9 C -0.377 4.377 10 H 0.091 0.909 11 C -0.268 4.268 12 N -0.621 5.621 13 Si 0.802 3.198 14 H -0.222 1.222 15 H -0.209 1.209 16 H -0.201 1.201 17 C 0.279 3.721 18 O -0.446 6.446 19 C -0.006 4.006 20 H 0.174 0.826 21 C -0.016 4.016 22 N -0.391 5.391 23 C 0.393 3.607 24 O -0.523 6.523 25 N -0.379 5.379 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.022 0.978 39 H 0.209 0.791 40 H 0.059 0.941 41 H 0.164 0.836 42 H 0.111 0.889 43 H 0.284 0.716 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -16.281 -12.979 -16.624 26.644 hybrid contribution 1.324 0.704 1.092 1.854 sum -14.957 -12.275 -15.532 24.813 Atomic orbital electron populations 1.22497 0.76316 1.05488 1.04642 1.47833 1.08725 1.04460 1.71818 1.21334 0.97698 0.85433 0.94301 1.21021 0.96195 0.93932 0.96689 1.21552 0.98773 0.97595 0.98651 1.21811 0.95195 1.02029 0.99310 1.20754 0.95830 0.93822 0.86136 1.42566 1.67770 1.25068 1.02847 1.19616 1.27137 0.98990 0.91976 0.90869 1.25538 1.03328 1.02409 0.95518 1.69813 1.53317 1.40757 0.98187 0.85220 0.78566 0.79814 0.76216 1.22165 1.20855 1.20068 1.21283 0.87974 0.86426 0.76373 1.90788 1.16034 1.87529 1.50295 1.22264 0.93771 0.84284 1.00296 0.82583 1.22578 1.01089 0.85667 0.92272 1.45018 1.50906 1.26009 1.17193 1.16272 0.79831 0.82685 0.81916 1.90954 1.48560 1.29586 1.83235 1.45018 1.52764 1.22310 1.17847 0.89041 0.88323 0.89740 0.87428 0.92032 0.95568 0.92744 0.95093 0.91485 0.90223 0.95415 0.95184 0.97768 0.79063 0.94066 0.83626 0.88893 0.71568 0.72683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 9.06 127.77 1.16 1.38 16 2 N -0.60 -8.92 2.40 -846.75 -2.03 -10.95 16 3 C 0.14 2.98 4.60 86.38 0.40 3.38 16 4 C -0.08 -2.31 0.60 -52.18 -0.03 -2.35 16 5 C -0.11 -3.84 6.97 71.98 0.50 -3.34 16 6 C -0.13 -3.34 7.05 71.98 0.51 -2.83 16 7 C 0.16 6.41 5.15 86.38 0.44 6.86 16 8 N -0.74 -37.80 5.00 -343.46 -1.72 -39.52 16 9 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 10 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 11 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 12 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 13 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.49 9.50 5.19 87.66 0.46 9.95 16 18 O -0.57 -17.68 14.35 -3.02 -0.04 -17.72 16 19 C 0.10 1.17 3.32 44.52 0.15 1.32 16 20 H 0.16 0.52 6.40 -2.39 -0.02 0.51 16 21 C 0.11 0.63 7.57 86.65 0.66 1.29 16 22 N -0.73 -9.74 6.37 -477.08 -3.04 -12.78 16 23 C 0.69 16.47 8.92 179.48 1.60 18.07 16 24 O -0.64 -21.98 18.05 -4.01 -0.07 -22.05 16 25 N -0.72 -14.07 5.64 -459.91 -2.59 -16.67 16 26 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.10 -0.08 5.98 -2.38 -0.01 -0.10 16 28 H 0.08 0.47 6.05 -2.39 -0.01 0.46 16 29 H 0.11 1.77 8.07 -2.39 -0.02 1.75 16 30 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 31 H 0.03 1.08 6.86 -2.39 -0.02 1.06 16 32 H 0.05 1.68 6.15 -2.39 -0.01 1.67 16 33 H 0.03 1.22 7.73 -2.39 -0.02 1.20 16 34 H 0.07 1.55 8.08 -2.38 -0.02 1.54 16 35 H 0.08 1.54 5.99 -2.38 -0.01 1.53 16 36 H 0.03 0.96 6.86 -2.39 -0.02 0.94 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.38 20.43 5.36 -92.71 -0.50 19.93 16 40 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 41 H 0.15 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.09 0.51 7.72 -2.39 -0.02 0.49 16 43 H 0.44 4.25 8.96 -92.71 -0.83 3.42 16 44 H 0.43 8.93 8.96 -92.71 -0.83 8.09 16 Total: -1.00 -87.67 344.98 -1.15 -88.83 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -1.11 Total: 25.12 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 7.14 Total: 16.72 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -9.10 Total: -139.68 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.12 Total: -39.78 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -87.67 -1.15 -88.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755284029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.812 kcal (2) G-P(sol) polarization free energy of solvation -87.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds