Wall clock time and date at job start Fri Apr 10 2020 17:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99777 * 2 1 4 4 O 1.20825 * 119.99746 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99843 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46983 * 179.97438 * 5 3 2 7 7 C 1.36931 * 120.00013 * 262.85368 * 6 5 3 8 8 H 1.08009 * 119.99994 * 142.29733 * 7 6 5 9 9 C 1.38810 * 120.00053 * 322.29414 * 7 6 5 10 10 N 1.31623 * 119.99980 * 156.56332 * 9 7 6 11 11 Si 1.86796 * 119.99922 * 336.55581 * 9 7 6 12 12 H 1.48500 * 109.47024 * 95.21446 * 11 9 7 13 13 H 1.48500 * 109.47452 * 215.21055 * 11 9 7 14 14 H 1.48495 * 109.47233 * 335.21426 * 11 9 7 15 15 C 1.46507 * 119.99844 * 82.85140 * 6 5 3 16 16 C 1.53003 * 109.46722 * 89.99831 * 15 6 5 17 17 C 1.52997 * 109.46658 * 179.97438 * 16 15 6 18 18 N 1.46510 * 109.47134 * 180.02562 * 17 16 15 19 19 C 1.34763 * 124.17497 * 269.72674 * 18 17 16 20 20 O 1.21240 * 127.16016 * 0.02562 * 19 18 17 21 21 C 1.51580 * 105.68429 * 179.97438 * 19 18 17 22 22 N 1.47308 * 103.59225 * 0.32051 * 21 19 18 23 23 C 1.33788 * 124.17673 * 90.02138 * 18 17 16 24 24 O 1.21535 * 123.77484 * 359.97100 * 23 18 17 25 25 H 1.08991 * 109.46989 * 299.99524 * 1 2 3 26 26 H 1.08992 * 109.47105 * 59.99879 * 1 2 3 27 27 H 1.08998 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46902 * 60.00247 * 5 3 2 29 29 H 1.09002 * 109.47148 * 299.99683 * 5 3 2 30 30 H 0.97003 * 119.99846 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.46973 * 330.00524 * 15 6 5 32 32 H 1.08995 * 109.46913 * 209.99914 * 15 6 5 33 33 H 1.08995 * 109.47493 * 299.99727 * 16 15 6 34 34 H 1.09000 * 109.46831 * 60.00605 * 16 15 6 35 35 H 1.09004 * 109.47294 * 300.00108 * 17 16 15 36 36 H 1.09000 * 109.47346 * 60.00455 * 17 16 15 37 37 H 1.09000 * 110.77035 * 241.71773 * 21 19 18 38 38 H 1.09004 * 110.56483 * 118.82916 * 21 19 18 39 39 H 0.96999 * 126.69347 * 179.76125 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.3168 3.2943 -1.1780 8 1 4.0423 4.3253 -1.3462 9 6 5.0093 2.5922 -2.1549 10 7 4.9391 2.9724 -3.4131 11 14 6.0412 1.1081 -1.6838 12 1 5.2417 -0.1296 -1.8693 13 1 7.2489 1.0510 -2.5460 14 1 6.4531 1.2228 -0.2618 15 6 4.0384 3.4274 1.2577 16 6 5.4308 3.2817 1.8749 17 6 5.4902 4.0629 3.1891 18 7 6.8237 3.9241 3.7799 19 6 7.1714 2.9494 4.6431 20 8 6.4669 2.0557 5.0612 21 6 8.6272 3.2021 4.9817 22 7 8.9597 4.4071 4.2024 23 6 7.8449 4.7525 3.5334 24 8 7.7729 5.7111 2.7897 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9557 0.7811 -0.8908 29 1 3.9564 0.7807 0.8892 30 1 5.4227 2.4815 -4.0957 31 1 3.2921 3.0339 1.9478 32 1 3.8350 4.4805 1.0642 33 1 5.6342 2.2286 2.0683 34 1 6.1771 3.6753 1.1847 35 1 5.2870 5.1161 2.9952 36 1 4.7439 3.6699 3.8794 37 1 9.2478 2.3614 4.6715 38 1 8.7449 3.3909 6.0488 39 1 9.8157 4.8626 4.1765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348482777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:36 Heat of formation + Delta-G solvation = -95.283115 kcal Electronic energy + Delta-G solvation = -24835.249955 eV Core-core repulsion = 20973.509762 eV Total energy + Delta-G solvation = -3861.740193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34441 -39.63165 -38.61445 -36.76974 -36.14270 -35.60220 -34.85959 -32.21759 -31.05061 -28.50831 -27.87632 -26.46483 -25.86438 -23.16838 -22.84408 -21.16988 -20.33614 -19.93997 -18.11839 -17.29147 -17.14574 -16.89848 -16.71884 -16.05695 -15.66902 -15.47139 -15.32933 -14.98518 -14.37077 -14.27932 -14.16363 -14.02660 -13.67939 -13.17005 -13.01411 -12.66171 -12.51125 -12.04952 -11.68237 -11.58300 -11.41623 -11.11870 -10.93810 -10.72102 -10.35997 -10.32587 -10.21003 -10.04308 -9.80760 -9.74140 -9.66177 -9.57609 -8.64823 -7.07872 -6.11675 -3.54659 1.52418 2.14804 2.95872 3.00857 3.04047 3.20348 3.35946 3.39262 3.43556 3.85156 4.38855 4.63068 4.72944 4.77423 5.03070 5.14192 5.41891 5.44298 5.46781 5.47671 5.51780 5.62956 5.67380 5.86274 5.91459 5.94580 6.08708 6.24109 6.32298 6.58793 6.65546 6.89372 7.00622 7.05482 7.27332 7.85954 8.04781 8.28517 8.55359 8.83662 9.54852 9.90328 11.02998 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.004769 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.010818 B = 5869.410385 C = 6809.461037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.427 3.573 4 O -0.497 6.497 5 C 0.140 3.860 6 N -0.570 5.570 7 C -0.271 4.271 8 H 0.085 0.915 9 C 0.039 3.961 10 N -0.886 5.886 11 Si 0.862 3.138 12 H -0.281 1.281 13 H -0.295 1.295 14 H -0.262 1.262 15 C 0.159 3.841 16 C -0.156 4.156 17 C 0.119 3.881 18 N -0.572 5.572 19 C 0.518 3.482 20 O -0.471 6.471 21 C 0.062 3.938 22 N -0.734 5.734 23 C 0.699 3.301 24 O -0.533 6.533 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.266 0.734 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 -3.147 17.328 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.267 3.733 4 O -0.382 6.382 5 C 0.010 3.990 6 N -0.289 5.289 7 C -0.400 4.400 8 H 0.102 0.898 9 C -0.163 4.163 10 N -0.525 5.525 11 Si 0.691 3.309 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.187 1.187 15 C 0.032 3.968 16 C -0.197 4.197 17 C -0.001 4.001 18 N -0.318 5.318 19 C 0.305 3.695 20 O -0.341 6.341 21 C -0.066 4.066 22 N -0.400 5.400 23 C 0.399 3.601 24 O -0.406 6.406 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 4.510 -2.779 16.912 17.723 hybrid contribution 0.795 -0.717 -0.011 1.071 sum 5.305 -3.495 16.901 18.056 Atomic orbital electron populations 1.23065 0.78656 1.02407 1.01884 1.86625 1.22011 1.35823 1.84923 1.26555 0.94222 0.80807 0.71752 1.90562 1.66805 1.36419 1.44387 1.21321 0.85120 0.89475 1.03052 1.43838 1.72943 1.07779 1.04329 1.18816 1.31099 0.98934 0.91135 0.89776 1.25517 0.97596 0.97960 0.95188 1.69896 1.41548 1.41465 0.99575 0.87131 0.81376 0.83046 0.79376 1.20851 1.22187 1.18668 1.20806 0.92098 0.97264 0.86594 1.22607 1.02696 0.99658 0.94703 1.21852 0.78979 1.03399 0.95917 1.46513 1.14168 1.27828 1.43323 1.20874 0.89761 0.80945 0.77880 1.90823 1.58957 1.30900 1.53435 1.22443 0.94348 0.90358 0.99414 1.45433 1.13893 1.31159 1.49465 1.15928 0.80864 0.82568 0.80734 1.91055 1.82711 1.28317 1.38497 0.92720 0.92482 0.89206 0.88345 0.90125 0.92390 0.93704 0.91839 0.92315 0.90395 0.88461 0.89034 0.86095 0.86175 0.71644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 101.05 1.07 1.57 16 2 O -0.38 -7.08 10.57 -39.26 -0.41 -7.49 16 3 C 0.43 9.25 8.01 36.01 0.29 9.54 16 4 O -0.50 -11.98 16.10 -18.75 -0.30 -12.28 16 5 C 0.14 3.05 4.86 -5.19 -0.03 3.02 16 6 N -0.57 -13.42 1.59 -174.60 -0.28 -13.70 16 7 C -0.27 -7.53 9.90 -15.06 -0.15 -7.68 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.04 1.11 5.23 -17.43 -0.09 1.02 16 10 N -0.89 -26.70 13.97 55.49 0.78 -25.92 16 11 Si 0.86 21.01 25.15 -169.99 -4.28 16.74 16 12 H -0.28 -6.59 6.67 56.52 0.38 -6.21 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.16 3.10 5.59 -4.04 -0.02 3.08 16 16 C -0.16 -2.74 5.86 -26.73 -0.16 -2.90 16 17 C 0.12 1.68 5.70 -4.04 -0.02 1.66 16 18 N -0.57 -7.54 2.60 -120.72 -0.31 -7.85 16 19 C 0.52 5.95 8.32 -10.56 -0.09 5.86 16 20 O -0.47 -6.71 17.76 5.59 0.10 -6.61 16 21 C 0.06 0.40 7.97 -4.32 -0.03 0.37 16 22 N -0.73 -6.07 6.58 -65.74 -0.43 -6.50 16 23 C 0.70 9.32 8.62 -88.02 -0.76 8.56 16 24 O -0.53 -9.33 17.48 5.34 0.09 -9.24 16 25 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.10 2.29 3.76 -51.93 -0.20 2.10 16 29 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 30 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.10 1.35 7.86 -51.93 -0.41 0.94 16 36 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 37 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.44 2.47 8.96 -40.82 -0.37 2.11 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -36.56 339.45 -5.11 -41.68 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.18 Total: 1.95 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 0.01 Total: 24.11 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.25 Total: -53.97 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.52 Total: -35.62 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.28 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.56 -5.11 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348482777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.608 kcal (2) G-P(sol) polarization free energy of solvation -36.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds