Wall clock time and date at job start Fri Apr 10 2020 17:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99777 * 2 1 4 4 O 1.20825 * 119.99746 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99843 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46983 * 179.97438 * 5 3 2 7 7 C 1.36931 * 120.00013 * 262.85368 * 6 5 3 8 8 H 1.08009 * 119.99994 * 142.29733 * 7 6 5 9 9 C 1.38810 * 120.00053 * 322.29414 * 7 6 5 10 10 N 1.31623 * 119.99980 * 156.56332 * 9 7 6 11 11 Si 1.86796 * 119.99922 * 336.55581 * 9 7 6 12 12 H 1.48500 * 109.47024 * 95.21446 * 11 9 7 13 13 H 1.48500 * 109.47452 * 215.21055 * 11 9 7 14 14 H 1.48495 * 109.47233 * 335.21426 * 11 9 7 15 15 C 1.46507 * 119.99844 * 82.85140 * 6 5 3 16 16 C 1.53003 * 109.46722 * 89.99831 * 15 6 5 17 17 C 1.52997 * 109.46658 * 179.97438 * 16 15 6 18 18 N 1.46510 * 109.47134 * 180.02562 * 17 16 15 19 19 C 1.34763 * 124.17497 * 269.72674 * 18 17 16 20 20 O 1.21240 * 127.16016 * 0.02562 * 19 18 17 21 21 C 1.51580 * 105.68429 * 179.97438 * 19 18 17 22 22 N 1.47308 * 103.59225 * 0.32051 * 21 19 18 23 23 C 1.33788 * 124.17673 * 90.02138 * 18 17 16 24 24 O 1.21535 * 123.77484 * 359.97100 * 23 18 17 25 25 H 1.08991 * 109.46989 * 299.99524 * 1 2 3 26 26 H 1.08992 * 109.47105 * 59.99879 * 1 2 3 27 27 H 1.08998 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46902 * 60.00247 * 5 3 2 29 29 H 1.09002 * 109.47148 * 299.99683 * 5 3 2 30 30 H 0.97003 * 119.99846 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.46973 * 330.00524 * 15 6 5 32 32 H 1.08995 * 109.46913 * 209.99914 * 15 6 5 33 33 H 1.08995 * 109.47493 * 299.99727 * 16 15 6 34 34 H 1.09000 * 109.46831 * 60.00605 * 16 15 6 35 35 H 1.09004 * 109.47294 * 300.00108 * 17 16 15 36 36 H 1.09000 * 109.47346 * 60.00455 * 17 16 15 37 37 H 1.09000 * 110.77035 * 241.71773 * 21 19 18 38 38 H 1.09004 * 110.56483 * 118.82916 * 21 19 18 39 39 H 0.96999 * 126.69347 * 179.76125 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.3168 3.2943 -1.1780 8 1 4.0423 4.3253 -1.3462 9 6 5.0093 2.5922 -2.1549 10 7 4.9391 2.9724 -3.4131 11 14 6.0412 1.1081 -1.6838 12 1 5.2417 -0.1296 -1.8693 13 1 7.2489 1.0510 -2.5460 14 1 6.4531 1.2228 -0.2618 15 6 4.0384 3.4274 1.2577 16 6 5.4308 3.2817 1.8749 17 6 5.4902 4.0629 3.1891 18 7 6.8237 3.9241 3.7799 19 6 7.1714 2.9494 4.6431 20 8 6.4669 2.0557 5.0612 21 6 8.6272 3.2021 4.9817 22 7 8.9597 4.4071 4.2024 23 6 7.8449 4.7525 3.5334 24 8 7.7729 5.7111 2.7897 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9557 0.7811 -0.8908 29 1 3.9564 0.7807 0.8892 30 1 5.4227 2.4815 -4.0957 31 1 3.2921 3.0339 1.9478 32 1 3.8350 4.4805 1.0642 33 1 5.6342 2.2286 2.0683 34 1 6.1771 3.6753 1.1847 35 1 5.2870 5.1161 2.9952 36 1 4.7439 3.6699 3.8794 37 1 9.2478 2.3614 4.6715 38 1 8.7449 3.3909 6.0488 39 1 9.8157 4.8626 4.1765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348482777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:35 Heat of formation + Delta-G solvation = -123.673776 kcal Electronic energy + Delta-G solvation = -24836.481067 eV Core-core repulsion = 20973.509762 eV Total energy + Delta-G solvation = -3862.971305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.26424 -41.29105 -39.61232 -38.40999 -37.16058 -37.12122 -36.18106 -34.07396 -32.61862 -30.04409 -28.69911 -27.79808 -27.51785 -24.69111 -23.81081 -22.76529 -21.68461 -21.30717 -19.20028 -19.00106 -18.63787 -18.03993 -17.80396 -17.56890 -17.18134 -16.80214 -16.64267 -16.24810 -15.84175 -15.62296 -15.25274 -15.04323 -14.88782 -14.68843 -14.42732 -14.34647 -14.04886 -13.55452 -13.24245 -12.93744 -12.89569 -12.74681 -12.62719 -12.18123 -12.05359 -11.76070 -11.70672 -11.60922 -11.43006 -11.27447 -10.89245 -10.72135 -10.38697 -9.01309 -8.28426 -5.71167 0.64988 1.22971 1.26778 1.31333 1.41400 1.51819 1.85518 1.97706 2.33717 2.34599 2.95840 3.08087 3.18438 3.79072 4.03255 4.15040 4.18933 4.24614 4.27830 4.34890 4.35538 4.36571 4.40211 4.44516 4.47640 4.69152 4.69613 4.73596 4.90728 5.14419 5.36250 5.46028 5.82382 5.86641 6.10102 6.11605 6.42142 6.72431 6.97496 7.13688 7.45696 7.84673 8.90936 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.004769 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.010818 B = 5869.410385 C = 6809.461037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.432 3.568 4 O -0.530 6.530 5 C 0.135 3.865 6 N -0.583 5.583 7 C -0.267 4.267 8 H 0.035 0.965 9 C -0.017 4.017 10 N -0.940 5.940 11 Si 0.931 3.069 12 H -0.261 1.261 13 H -0.302 1.302 14 H -0.244 1.244 15 C 0.158 3.842 16 C -0.138 4.138 17 C 0.125 3.875 18 N -0.581 5.581 19 C 0.512 3.488 20 O -0.501 6.501 21 C 0.075 3.925 22 N -0.710 5.710 23 C 0.691 3.309 24 O -0.587 6.587 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 -5.846 20.392 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C 0.273 3.727 4 O -0.418 6.418 5 C 0.006 3.994 6 N -0.304 5.304 7 C -0.396 4.396 8 H 0.053 0.947 9 C -0.214 4.214 10 N -0.582 5.582 11 Si 0.757 3.243 12 H -0.187 1.187 13 H -0.230 1.230 14 H -0.167 1.167 15 C 0.033 3.967 16 C -0.179 4.179 17 C 0.003 3.997 18 N -0.327 5.327 19 C 0.302 3.698 20 O -0.373 6.373 21 C -0.051 4.051 22 N -0.376 5.376 23 C 0.391 3.609 24 O -0.464 6.464 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.152 0.848 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 5.703 -5.529 20.057 21.572 hybrid contribution 0.287 0.118 -0.907 0.958 sum 5.990 -5.410 19.150 20.782 Atomic orbital electron populations 1.23455 0.75945 1.05350 1.01881 1.86564 1.24481 1.33780 1.84173 1.26258 0.94288 0.81096 0.71045 1.90558 1.67520 1.37666 1.46066 1.21371 0.85497 0.88291 1.04236 1.43870 1.73740 1.08623 1.04118 1.18563 1.30828 0.97395 0.92850 0.94705 1.26185 0.98644 1.01918 0.94696 1.70033 1.43201 1.44052 1.00878 0.86023 0.78951 0.79677 0.79662 1.18675 1.22954 1.16689 1.20868 0.94024 0.96200 0.85604 1.22311 1.00005 0.99995 0.95557 1.21636 0.80655 1.02670 0.94756 1.46557 1.13734 1.28627 1.43734 1.21678 0.91651 0.79724 0.76745 1.90812 1.60321 1.31837 1.54328 1.22736 0.90704 0.90244 1.01386 1.45386 1.12949 1.31297 1.47971 1.16157 0.81964 0.82047 0.80723 1.91022 1.83695 1.30612 1.41076 0.91945 0.93394 0.84787 0.89593 0.86164 0.92399 0.91504 0.93331 0.92046 0.93756 0.88949 0.87094 0.82808 0.81853 0.69927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.92 16 2 O -0.37 -13.12 10.57 -51.44 -0.54 -13.67 16 3 C 0.43 18.19 8.01 71.24 0.57 18.76 16 4 O -0.53 -25.54 16.10 21.97 0.35 -25.18 16 5 C 0.13 5.66 4.86 85.63 0.42 6.07 16 6 N -0.58 -27.72 1.59 -706.33 -1.12 -28.84 16 7 C -0.27 -15.46 9.90 84.03 0.83 -14.63 16 8 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 9 C -0.02 -0.98 5.23 84.86 0.44 -0.54 16 10 N -0.94 -59.05 13.97 21.65 0.30 -58.74 16 11 Si 0.93 43.66 25.15 68.60 1.73 45.38 16 12 H -0.26 -11.29 6.67 99.48 0.66 -10.62 16 13 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 14 H -0.24 -10.56 7.11 99.48 0.71 -9.85 16 15 C 0.16 6.24 5.59 86.38 0.48 6.72 16 16 C -0.14 -4.81 5.86 30.59 0.18 -4.64 16 17 C 0.12 3.45 5.70 86.38 0.49 3.94 16 18 N -0.58 -14.45 2.60 -773.11 -2.01 -16.46 16 19 C 0.51 10.25 8.32 87.94 0.73 10.98 16 20 O -0.50 -12.91 17.76 -2.91 -0.05 -12.96 16 21 C 0.08 0.62 7.97 85.76 0.68 1.31 16 22 N -0.71 -9.52 6.58 -480.32 -3.16 -12.68 16 23 C 0.69 17.65 8.62 179.44 1.55 19.20 16 24 O -0.59 -20.93 17.48 -3.83 -0.07 -21.00 16 25 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 26 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 3.85 3.76 -2.39 -0.01 3.85 16 29 H 0.12 4.07 8.12 -2.39 -0.02 4.05 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.07 2.32 8.07 -2.39 -0.02 2.31 16 32 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.64 7.86 -2.39 -0.02 2.62 16 36 H 0.11 2.63 8.00 -2.39 -0.02 2.61 16 37 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.16 0.16 8.14 -2.38 -0.02 0.14 16 39 H 0.45 3.64 8.96 -92.71 -0.83 2.80 16 Total: -1.00 -85.16 339.45 3.21 -81.95 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.21 Total: 13.12 kcal Atomic # 6 Polarization: 41.52 SS G_CDS: 7.58 Total: 49.10 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.99 Total: -116.73 kcal Atomic # 8 Polarization: -72.51 SS G_CDS: -0.31 Total: -72.81 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.73 Total: 45.38 kcal Total: -85.16 3.21 -81.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348482777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.722 kcal (2) G-P(sol) polarization free energy of solvation -85.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds