Wall clock time and date at job start Fri Apr 10 2020 17:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35037 * 125.52452 * 2 1 4 4 C 1.41156 * 108.23688 * 179.97438 * 3 2 1 5 5 N 1.32956 * 126.37422 * 179.97438 * 4 3 2 6 6 C 1.33906 * 120.00381 * 0.02617 * 5 4 3 7 7 O 1.21960 * 119.99743 * 359.97438 * 6 5 4 8 8 C 1.47402 * 120.00508 * 180.02562 * 6 5 4 9 9 C 1.37907 * 125.89919 * 179.97438 * 8 6 5 10 10 C 1.39397 * 107.51446 * 179.75538 * 9 8 6 11 11 C 1.38076 * 107.48859 * 0.42202 * 10 9 8 12 12 C 1.43205 * 125.91647 * 179.84097 * 11 10 9 13 13 N 9.92376 * 154.10175 * 359.95809 * 2 1 3 14 14 N 1.36874 * 108.16116 * 359.57496 * 11 10 9 15 15 H 0.97002 * 125.68683 * 180.24183 * 14 11 10 16 16 N 1.37464 * 107.24315 * 0.22883 * 4 3 2 17 17 H 0.96998 * 126.35991 * 179.76300 * 16 4 3 18 18 N 1.36418 * 125.52526 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.85330 * 0.03524 * 18 2 1 20 20 C 1.50705 * 109.47035 * 85.00269 * 19 18 2 21 21 H 1.07998 * 119.99809 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00133 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99994 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47084 * 60.00433 * 24 22 20 26 26 H 1.48503 * 109.46992 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47189 * 300.00253 * 24 22 20 28 28 H 1.08993 * 109.47212 * 90.02467 * 1 2 3 29 29 H 1.09003 * 109.47072 * 210.02593 * 1 2 3 30 30 H 1.09001 * 109.46783 * 330.02484 * 1 2 3 31 31 H 1.08001 * 125.88017 * 0.02562 * 3 2 1 32 32 H 1.07993 * 126.23829 * 0.04284 * 9 8 6 33 33 H 1.08002 * 126.25172 * 180.29873 * 10 9 8 34 34 H 1.09001 * 109.47496 * 205.00415 * 19 18 2 35 35 H 1.08998 * 109.47215 * 325.00546 * 19 18 2 36 36 H 0.96998 * 119.99487 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2917 1.0990 0.0000 4 6 3.6395 0.6796 0.0006 5 7 4.7105 1.4674 0.0003 6 6 4.5627 2.7983 -0.0001 7 8 3.4457 3.2878 -0.0007 8 6 5.7501 3.6717 -0.0010 9 6 5.7395 5.0508 -0.0020 10 6 7.0656 5.4805 0.0031 11 6 7.8663 4.3556 -0.0026 12 6 9.2983 4.3438 -0.0034 13 7 10.4342 4.3344 -0.0032 14 7 7.0542 3.2538 -0.0014 15 1 7.3526 2.3309 -0.0012 16 7 3.6384 -0.6951 -0.0043 17 1 4.4191 -1.2707 -0.0084 18 7 2.2997 -1.1103 0.0005 19 6 1.8319 -2.4985 0.0004 20 6 1.5550 -2.9351 -1.4152 21 1 1.7121 -2.2474 -2.2329 22 6 1.1019 -4.2129 -1.6664 23 7 0.9111 -5.0505 -0.6706 24 14 0.7580 -4.7538 -3.4209 25 1 2.0028 -4.6503 -4.2239 26 1 0.2839 -6.1612 -3.4211 27 1 -0.2868 -3.8800 -4.0125 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9473 2.1226 0.0004 32 1 4.8636 5.6824 -0.0016 33 1 7.4046 6.5059 0.0083 34 1 2.5983 -3.1402 0.4352 35 1 0.9179 -2.5740 0.5893 36 1 0.5927 -5.9495 -0.8474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348825882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:41 Heat of formation + Delta-G solvation = 133.145614 kcal Electronic energy + Delta-G solvation = -22191.469708 eV Core-core repulsion = 18679.236599 eV Total energy + Delta-G solvation = -3512.233109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25879 -40.99857 -38.28357 -36.54800 -34.50999 -33.29451 -32.44403 -31.34758 -30.75656 -29.72424 -27.68035 -26.93476 -24.34417 -23.02253 -21.91215 -20.60844 -20.14017 -19.77445 -18.66868 -17.30282 -16.97127 -16.18962 -15.38232 -15.23440 -15.02984 -14.87039 -14.45821 -14.18239 -13.81672 -13.57503 -13.30188 -13.06663 -13.00891 -12.86939 -12.80364 -12.62006 -12.47225 -12.24443 -12.13729 -11.92293 -11.43681 -11.11136 -10.61074 -10.51016 -9.79718 -9.61704 -9.11933 -9.03763 -9.00135 -8.66601 -8.26642 -7.14034 -6.59632 -4.74956 0.97353 1.58569 1.86378 2.20172 2.37516 3.01105 3.05431 3.07562 3.10486 3.12576 3.34973 3.92785 3.99757 4.04886 4.41394 4.61435 4.73078 4.88115 5.17953 5.28949 5.41709 5.62072 5.75950 5.84202 5.97718 6.00327 6.09057 6.27103 6.36405 6.49213 6.57121 6.68071 6.82549 7.16950 7.26659 7.31294 7.36844 7.41321 7.47614 7.76054 8.05250 8.33105 8.96108 9.06375 10.44008 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.002850 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.089750 B = 9823.505353 C =10517.102024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.193 3.807 3 C -0.331 4.331 4 C 0.473 3.527 5 N -0.706 5.706 6 C 0.554 3.446 7 O -0.564 6.564 8 C 0.060 3.940 9 C -0.148 4.148 10 C -0.124 4.124 11 C 0.056 3.944 12 C 0.285 3.715 13 N -0.416 5.416 14 N -0.497 5.497 15 H 0.429 0.571 16 N -0.464 5.464 17 H 0.446 0.554 18 N -0.335 5.335 19 C 0.253 3.747 20 C -0.559 4.559 21 H 0.069 0.931 22 C 0.072 3.928 23 N -0.886 5.886 24 Si 0.910 3.090 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.185 0.815 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 10.423 2.439 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 C -0.363 4.363 4 C 0.225 3.775 5 N -0.471 5.471 6 C 0.339 3.661 7 O -0.443 6.443 8 C -0.061 4.061 9 C -0.173 4.173 10 C -0.152 4.152 11 C -0.061 4.061 12 C -0.030 4.030 13 N -0.093 5.093 14 N -0.093 5.093 15 H 0.269 0.731 16 N -0.185 5.185 17 H 0.293 0.707 18 N -0.120 5.120 19 C 0.137 3.863 20 C -0.597 4.597 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.196 1.196 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.202 0.798 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.355 9.577 2.505 10.815 hybrid contribution -0.463 -1.076 -0.959 1.514 sum 3.892 8.501 1.546 9.476 Atomic orbital electron populations 1.20629 0.86100 1.04064 1.04476 1.21406 0.94661 0.85480 0.91892 1.22252 0.90990 1.00422 1.22623 1.18987 0.91552 0.82006 0.84967 1.68711 1.28650 1.04730 1.45008 1.17848 0.85603 0.85460 0.77149 1.90687 1.24840 1.79057 1.49764 1.20686 0.82733 0.94004 1.08722 1.21198 0.97234 0.92149 1.06711 1.21159 0.91861 0.96846 1.05380 1.15604 0.82896 0.88426 1.19202 1.24409 0.90943 0.94588 0.93096 1.81288 1.11378 1.05868 1.10784 1.41925 1.05236 1.08456 1.53661 0.73147 1.44571 0.99052 1.05180 1.69711 0.70658 1.48046 0.92660 1.08423 1.62914 1.20097 0.96580 0.69956 0.99706 1.21310 1.48087 0.98817 0.91470 0.91288 1.24942 0.94146 0.95749 0.98523 1.69882 1.43728 1.07017 1.31561 0.86346 0.79183 0.77908 0.82977 1.19838 1.20742 1.19592 0.88954 0.89989 0.89338 0.79765 0.82672 0.83070 0.93013 0.91254 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.09 36.01 0.36 -0.83 16 2 C 0.19 3.14 6.93 -81.69 -0.57 2.57 16 3 C -0.33 -5.76 9.41 -39.61 -0.37 -6.14 16 4 C 0.47 8.43 8.07 -155.25 -1.25 7.17 16 5 N -0.71 -12.39 10.51 -12.33 -0.13 -12.52 16 6 C 0.55 9.76 7.72 -12.92 -0.10 9.66 16 7 O -0.56 -10.93 13.80 4.95 0.07 -10.87 16 8 C 0.06 0.86 7.06 -81.98 -0.58 0.28 16 9 C -0.15 -1.82 10.60 -39.27 -0.42 -2.24 16 10 C -0.12 -1.28 10.80 -39.21 -0.42 -1.71 16 11 C 0.06 0.63 6.94 -83.75 -0.58 0.05 16 12 C 0.28 3.35 15.89 -22.47 -0.36 2.99 16 13 N -0.42 -5.60 18.54 41.83 0.78 -4.82 16 14 N -0.50 -6.02 6.11 -6.88 -0.04 -6.06 16 15 H 0.43 4.68 8.96 -40.82 -0.37 4.32 16 16 N -0.46 -7.68 7.38 31.33 0.23 -7.44 16 17 H 0.45 6.38 8.96 -182.55 -1.64 4.74 16 18 N -0.33 -5.88 3.63 -58.03 -0.21 -6.09 16 19 C 0.25 4.99 5.93 -5.19 -0.03 4.96 16 20 C -0.56 -12.62 9.39 -34.44 -0.32 -12.95 16 21 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 22 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -21.62 13.29 55.43 0.74 -20.89 16 24 Si 0.91 18.55 29.54 -169.99 -5.02 13.52 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.03 7.14 -51.93 -0.37 0.66 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.19 3.31 5.77 -52.49 -0.30 3.01 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.38 7.18 -51.93 -0.37 1.00 16 36 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -27.50 333.08 -8.02 -35.52 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.71 Total: 9.23 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -4.74 Total: 5.40 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 1.36 Total: -57.83 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.50 -8.02 -35.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.664 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds