Wall clock time and date at job start Fri Apr 10 2020 17:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35037 * 125.52452 * 2 1 4 4 C 1.41156 * 108.23688 * 179.97438 * 3 2 1 5 5 N 1.32956 * 126.37422 * 179.97438 * 4 3 2 6 6 C 1.33906 * 120.00381 * 0.02617 * 5 4 3 7 7 O 1.21960 * 119.99743 * 359.97438 * 6 5 4 8 8 C 1.47402 * 120.00508 * 180.02562 * 6 5 4 9 9 C 1.37907 * 125.89919 * 179.97438 * 8 6 5 10 10 C 1.39397 * 107.51446 * 179.75538 * 9 8 6 11 11 C 1.38076 * 107.48859 * 0.42202 * 10 9 8 12 12 C 1.43205 * 125.91647 * 179.84097 * 11 10 9 13 13 N 9.92376 * 154.10175 * 359.95809 * 2 1 3 14 14 N 1.36874 * 108.16116 * 359.57496 * 11 10 9 15 15 H 0.97002 * 125.68683 * 180.24183 * 14 11 10 16 16 N 1.37464 * 107.24315 * 0.22883 * 4 3 2 17 17 H 0.96998 * 126.35991 * 179.76300 * 16 4 3 18 18 N 1.36418 * 125.52526 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.85330 * 0.03524 * 18 2 1 20 20 C 1.50705 * 109.47035 * 85.00269 * 19 18 2 21 21 H 1.07998 * 119.99809 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00133 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99994 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47084 * 60.00433 * 24 22 20 26 26 H 1.48503 * 109.46992 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47189 * 300.00253 * 24 22 20 28 28 H 1.08993 * 109.47212 * 90.02467 * 1 2 3 29 29 H 1.09003 * 109.47072 * 210.02593 * 1 2 3 30 30 H 1.09001 * 109.46783 * 330.02484 * 1 2 3 31 31 H 1.08001 * 125.88017 * 0.02562 * 3 2 1 32 32 H 1.07993 * 126.23829 * 0.04284 * 9 8 6 33 33 H 1.08002 * 126.25172 * 180.29873 * 10 9 8 34 34 H 1.09001 * 109.47496 * 205.00415 * 19 18 2 35 35 H 1.08998 * 109.47215 * 325.00546 * 19 18 2 36 36 H 0.96998 * 119.99487 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2917 1.0990 0.0000 4 6 3.6395 0.6796 0.0006 5 7 4.7105 1.4674 0.0003 6 6 4.5627 2.7983 -0.0001 7 8 3.4457 3.2878 -0.0007 8 6 5.7501 3.6717 -0.0010 9 6 5.7395 5.0508 -0.0020 10 6 7.0656 5.4805 0.0031 11 6 7.8663 4.3556 -0.0026 12 6 9.2983 4.3438 -0.0034 13 7 10.4342 4.3344 -0.0032 14 7 7.0542 3.2538 -0.0014 15 1 7.3526 2.3309 -0.0012 16 7 3.6384 -0.6951 -0.0043 17 1 4.4191 -1.2707 -0.0084 18 7 2.2997 -1.1103 0.0005 19 6 1.8319 -2.4985 0.0004 20 6 1.5550 -2.9351 -1.4152 21 1 1.7121 -2.2474 -2.2329 22 6 1.1019 -4.2129 -1.6664 23 7 0.9111 -5.0505 -0.6706 24 14 0.7580 -4.7538 -3.4209 25 1 2.0028 -4.6503 -4.2239 26 1 0.2839 -6.1612 -3.4211 27 1 -0.2868 -3.8800 -4.0125 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9473 2.1226 0.0004 32 1 4.8636 5.6824 -0.0016 33 1 7.4046 6.5059 0.0083 34 1 2.5983 -3.1402 0.4352 35 1 0.9179 -2.5740 0.5893 36 1 0.5927 -5.9495 -0.8474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348825882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:40 Heat of formation + Delta-G solvation = 116.456511 kcal Electronic energy + Delta-G solvation = -22192.193402 eV Core-core repulsion = 18679.236599 eV Total energy + Delta-G solvation = -3512.956803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49067 -42.10789 -39.61321 -37.56341 -36.04159 -34.83697 -33.73822 -32.58919 -31.95527 -30.81408 -28.84449 -28.49437 -25.69002 -24.48083 -23.07168 -21.69385 -21.22479 -21.00326 -19.81987 -18.92716 -18.46244 -17.45945 -16.83162 -16.58003 -16.43262 -16.01400 -15.72460 -15.33411 -15.08693 -14.53480 -14.46683 -14.35407 -14.29381 -14.14688 -13.89744 -13.73913 -13.63645 -13.56923 -13.20329 -13.18833 -12.96006 -12.71698 -12.29819 -12.09414 -11.14782 -11.13594 -10.77612 -10.34943 -10.04885 -10.03155 -9.30525 -8.60884 -8.28827 -6.56689 -0.18934 0.40538 0.52446 1.22792 1.26859 1.39329 1.42890 1.49169 1.82370 2.15481 2.29819 2.42141 2.66366 2.94447 3.04460 3.09488 3.41520 3.66663 4.20407 4.26130 4.28525 4.37040 4.67270 4.75591 4.85708 4.87512 4.94188 4.98762 5.11361 5.24319 5.31557 5.50217 5.68290 5.69016 5.85893 5.95703 6.10269 6.22468 6.36916 6.41373 6.56863 6.73710 7.17053 7.71356 8.65602 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.002850 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.089750 B = 9823.505353 C =10517.102024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.199 3.801 3 C -0.342 4.342 4 C 0.459 3.541 5 N -0.708 5.708 6 C 0.545 3.455 7 O -0.589 6.589 8 C 0.030 3.970 9 C -0.141 4.141 10 C -0.109 4.109 11 C 0.065 3.935 12 C 0.306 3.694 13 N -0.442 5.442 14 N -0.495 5.495 15 H 0.432 0.568 16 N -0.461 5.461 17 H 0.453 0.547 18 N -0.344 5.344 19 C 0.266 3.734 20 C -0.562 4.562 21 H 0.059 0.941 22 C 0.033 3.967 23 N -0.912 5.912 24 Si 0.960 3.040 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.266 1.266 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 11.592 2.120 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.374 4.374 4 C 0.211 3.789 5 N -0.474 5.474 6 C 0.332 3.668 7 O -0.472 6.472 8 C -0.091 4.091 9 C -0.167 4.167 10 C -0.137 4.137 11 C -0.053 4.053 12 C -0.009 4.009 13 N -0.120 5.120 14 N -0.091 5.091 15 H 0.272 0.728 16 N -0.183 5.183 17 H 0.302 0.698 18 N -0.130 5.130 19 C 0.149 3.851 20 C -0.600 4.600 21 H 0.077 0.923 22 C -0.169 4.169 23 N -0.550 5.550 24 Si 0.785 3.215 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.191 1.191 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.197 0.803 32 H 0.181 0.819 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.484 10.748 2.187 11.850 hybrid contribution -0.440 -1.357 -0.844 1.657 sum 4.044 9.392 1.343 10.313 Atomic orbital electron populations 1.20809 0.83563 1.05549 1.05261 1.21936 0.96109 0.84509 0.90259 1.22231 0.91135 1.00496 1.23494 1.19235 0.92075 0.82422 0.85179 1.68798 1.28563 1.04975 1.45017 1.18328 0.86444 0.85620 0.76423 1.90657 1.26059 1.79382 1.51063 1.20389 0.82557 0.94353 1.11771 1.21428 0.98491 0.91342 1.05420 1.21518 0.90532 0.98092 1.03538 1.15685 0.82569 0.88508 1.18550 1.24278 0.90681 0.93684 0.92249 1.81322 1.12163 1.06797 1.11673 1.41867 1.04666 1.08955 1.53611 0.72797 1.44545 0.99027 1.04977 1.69764 0.69783 1.47893 0.93267 1.08131 1.63687 1.19749 0.96329 0.70802 0.98199 1.21486 1.47434 0.98637 0.92488 0.92307 1.25551 0.94189 0.95957 1.01233 1.69949 1.44803 1.07286 1.32915 0.85553 0.78779 0.77569 0.79555 1.20249 1.20581 1.19089 0.88305 0.89813 0.86532 0.80260 0.81886 0.79687 0.93928 0.91078 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 10.09 71.24 0.72 -1.52 16 2 C 0.20 6.33 6.93 41.11 0.28 6.61 16 3 C -0.34 -11.88 9.41 22.25 0.21 -11.67 16 4 C 0.46 16.43 8.07 133.91 1.08 17.51 16 5 N -0.71 -25.01 10.51 -311.51 -3.27 -28.29 16 6 C 0.54 19.21 7.72 86.79 0.67 19.88 16 7 O -0.59 -23.03 13.80 -5.19 -0.07 -23.10 16 8 C 0.03 0.83 7.06 40.68 0.29 1.12 16 9 C -0.14 -3.21 10.60 22.47 0.24 -2.97 16 10 C -0.11 -1.93 10.80 22.51 0.24 -1.68 16 11 C 0.06 1.31 6.94 39.57 0.27 1.58 16 12 C 0.31 6.58 15.89 88.33 1.40 7.98 16 13 N -0.44 -11.20 18.54 19.00 0.35 -10.85 16 14 N -0.50 -11.41 6.11 -175.67 -1.07 -12.48 16 15 H 0.43 9.14 8.96 -92.71 -0.83 8.31 16 16 N -0.46 -15.28 7.38 -54.78 -0.40 -15.68 16 17 H 0.45 13.06 8.96 -213.28 -1.91 11.15 16 18 N -0.34 -11.99 3.63 -337.50 -1.23 -13.22 16 19 C 0.27 10.47 5.93 85.64 0.51 10.98 16 20 C -0.56 -25.20 9.39 25.60 0.24 -24.96 16 21 H 0.06 2.72 7.81 -2.91 -0.02 2.70 16 22 C 0.03 1.54 5.46 84.65 0.46 2.00 16 23 N -0.91 -44.30 13.29 21.45 0.28 -44.02 16 24 Si 0.96 37.49 29.54 68.60 2.03 39.52 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 1.99 7.14 -2.39 -0.02 1.97 16 30 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.18 6.47 5.77 -2.91 -0.02 6.45 16 32 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 2.80 7.18 -2.39 -0.02 2.78 16 36 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 Total: -1.00 -57.86 333.08 1.66 -56.19 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -1.57 Total: 27.07 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 6.62 Total: 24.86 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.34 Total: -124.54 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.10 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -57.86 1.66 -56.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.649 kcal (2) G-P(sol) polarization free energy of solvation -57.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds