Wall clock time and date at job start Fri Apr 10 2020 17:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00279 * 2 1 4 4 C 1.50692 * 109.47217 * 275.57065 * 3 2 1 5 5 H 1.07997 * 120.00274 * 4.71492 * 4 3 2 6 6 C 1.37880 * 120.00166 * 184.71152 * 4 3 2 7 7 N 1.31516 * 119.99667 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00374 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47140 * 89.99967 * 8 6 4 10 10 H 1.48502 * 109.47390 * 210.00583 * 8 6 4 11 11 H 1.48505 * 109.46892 * 330.00330 * 8 6 4 12 12 S 1.65603 * 119.99585 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40272 * 159.57137 * 12 2 1 14 14 O 1.42101 * 106.40427 * 26.65409 * 12 2 1 15 15 N 1.65593 * 107.22037 * 273.10914 * 12 2 1 16 16 C 1.46502 * 119.99841 * 62.77910 * 15 12 2 17 17 C 1.53004 * 109.47330 * 164.44116 * 16 15 12 18 18 C 1.50700 * 109.47141 * 179.97438 * 17 16 15 19 19 C 1.38643 * 120.79412 * 89.99923 * 18 17 16 20 20 C 1.38197 * 119.16942 * 179.97438 * 19 18 17 21 21 N 1.31873 * 120.76076 * 0.26026 * 20 19 18 22 22 C 1.31866 * 121.72583 * 359.47215 * 21 20 19 23 23 C 1.38211 * 120.76430 * 0.52632 * 22 21 20 24 24 H 1.09001 * 109.46856 * 269.99857 * 1 2 3 25 25 H 1.09002 * 109.47017 * 29.99593 * 1 2 3 26 26 H 1.09000 * 109.47200 * 149.99914 * 1 2 3 27 27 H 1.09000 * 109.47172 * 35.57601 * 3 2 1 28 28 H 1.09001 * 109.46925 * 155.56728 * 3 2 1 29 29 H 0.97007 * 119.99726 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00861 * 242.77699 * 15 12 2 31 31 H 1.09003 * 109.47390 * 44.44028 * 16 15 12 32 32 H 1.09004 * 109.47092 * 284.44526 * 16 15 12 33 33 H 1.08999 * 109.46736 * 60.00373 * 17 16 15 34 34 H 1.08993 * 109.47296 * 299.99785 * 17 16 15 35 35 H 1.08001 * 120.41387 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.62424 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.62273 * 180.26801 * 22 21 20 38 38 H 1.08002 * 120.41934 * 179.76313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3293 1.7726 -1.4140 5 1 1.8447 1.2456 -2.2225 6 6 3.0685 2.9068 -1.6757 7 7 3.6590 3.5484 -0.6911 8 14 3.2313 3.5320 -3.4284 9 1 2.1294 4.4841 -3.7186 10 1 4.5366 4.2216 -3.5888 11 1 3.1573 2.3870 -4.3712 12 16 2.2929 -1.4342 0.0006 13 8 3.6000 -1.1433 -0.4753 14 8 1.4384 -2.3911 -0.6105 15 7 2.4637 -1.9010 1.5802 16 6 1.2784 -2.1952 2.3893 17 6 1.6963 -2.9591 3.6474 18 6 0.4770 -3.2611 4.4800 19 6 -0.2375 -4.4344 4.2927 20 6 -1.3502 -4.6776 5.0753 21 7 -1.7367 -3.8070 5.9873 22 6 -1.0787 -2.6835 6.1964 23 6 0.0434 -2.3724 5.4519 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6554 2.0013 0.5979 28 1 3.1895 1.1154 0.4251 29 1 4.1794 4.3461 -0.8752 30 1 3.3485 -1.9797 1.9699 31 1 0.5841 -2.8030 1.8091 32 1 0.7929 -1.2620 2.6752 33 1 2.3905 -2.3512 4.2277 34 1 2.1817 -3.8921 3.3615 35 1 0.0722 -5.1497 3.5451 36 1 -1.9124 -5.5890 4.9354 37 1 -1.4230 -1.9965 6.9553 38 1 0.5759 -1.4489 5.6252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355803118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:05 Heat of formation + Delta-G solvation = -46.244913 kcal Electronic energy + Delta-G solvation = -21951.159937 eV Core-core repulsion = 18534.299071 eV Total energy + Delta-G solvation = -3416.860866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41536 -36.74706 -36.26509 -35.50778 -35.18723 -33.36334 -32.45130 -31.44682 -28.87596 -27.79601 -25.10453 -24.05277 -23.71126 -22.32185 -21.73832 -19.01358 -17.41752 -16.84453 -16.66012 -16.63388 -16.42982 -15.98346 -15.73695 -15.03493 -14.70659 -14.32777 -14.02684 -13.85731 -13.48497 -13.31105 -13.03886 -12.45913 -12.37665 -12.20159 -12.13985 -11.64053 -11.54289 -11.48230 -11.34494 -11.17406 -11.08389 -10.71371 -10.53015 -10.05698 -9.82678 -9.78300 -9.72388 -9.43764 -9.35603 -8.46258 -8.09666 -6.08286 -4.12482 0.88406 0.94025 1.22221 3.30381 3.36902 3.41653 3.45125 3.57186 4.07756 4.22167 4.39948 4.43366 4.45592 4.74491 4.85198 4.87475 4.95408 5.04843 5.23700 5.26990 5.41633 5.49519 5.53425 5.59658 5.66953 5.75536 5.94189 5.99794 6.10979 6.26891 6.44789 6.52908 7.03678 7.23385 7.38368 7.59641 7.72301 7.89266 8.18518 8.90090 9.53022 11.00366 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003384 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.650954 B = 8272.036861 C = 8616.146037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.256 3.744 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.782 3.218 13 O -0.962 6.962 14 O -0.998 6.998 15 N -1.136 6.136 16 C 0.127 3.873 17 C -0.091 4.091 18 C -0.036 4.036 19 C -0.168 4.168 20 C 0.098 3.902 21 N -0.491 5.491 22 C 0.099 3.901 23 C -0.167 4.167 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.413 0.587 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -12.914 13.167 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.946 6.946 14 O -0.981 6.981 15 N -0.895 5.895 16 C 0.000 4.000 17 C -0.129 4.129 18 C -0.045 4.045 19 C -0.188 4.188 20 C -0.058 4.058 21 N -0.200 5.200 22 C -0.058 4.058 23 C -0.187 4.187 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.456 -13.383 12.854 19.998 hybrid contribution 1.139 0.894 -0.892 1.701 sum -6.317 -12.489 11.961 18.410 Atomic orbital electron populations 1.21384 0.80284 1.03588 1.00088 1.57589 1.14228 1.23311 1.88675 1.19070 0.91200 0.78609 0.97666 1.21500 1.31832 1.10338 0.93445 0.92127 1.24940 0.94985 0.96529 0.97541 1.69919 1.33176 1.18928 1.31361 0.86503 0.77468 0.78922 0.84602 1.20592 1.21027 1.19698 1.01948 0.73394 0.72933 0.72785 1.93648 1.38642 1.84562 1.77773 1.93523 1.69019 1.61173 1.74407 1.56289 1.13781 1.85957 1.33432 1.21124 0.87558 0.99539 0.91748 1.20856 0.94817 1.02085 0.95186 1.20217 0.95788 0.93707 0.94772 1.22130 0.97144 0.98187 1.01368 1.22770 0.93994 0.97959 0.91107 1.67679 1.31015 1.03240 1.18049 1.22783 0.91640 0.93728 0.97639 1.22142 0.98742 1.00709 0.97134 0.94406 0.90313 0.91605 0.95014 0.93942 0.92662 0.75447 0.90476 0.91578 0.89529 0.89559 0.84560 0.82753 0.82717 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.69 59.85 0.64 2.20 16 2 N -1.00 -20.18 3.23 -123.06 -0.40 -20.57 16 3 C 0.26 6.35 5.10 -5.20 -0.03 6.32 16 4 C -0.53 -14.87 9.38 -34.44 -0.32 -15.19 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 12 S 2.78 53.55 6.09 -107.50 -0.65 52.89 16 13 O -0.96 -22.63 16.99 -57.17 -0.97 -23.61 16 14 O -1.00 -20.36 16.34 -57.17 -0.93 -21.29 16 15 N -1.14 -15.50 6.05 -10.61 -0.06 -15.57 16 16 C 0.13 1.42 6.24 -4.04 -0.03 1.39 16 17 C -0.09 -0.77 5.54 -27.88 -0.15 -0.92 16 18 C -0.04 -0.32 5.17 -104.32 -0.54 -0.86 16 19 C -0.17 -1.43 9.82 -39.45 -0.39 -1.81 16 20 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 21 N -0.49 -5.14 10.36 -13.25 -0.14 -5.28 16 22 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 23 C -0.17 -1.42 9.82 -39.44 -0.39 -1.80 16 24 H 0.04 0.51 8.05 -51.93 -0.42 0.10 16 25 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 26 H 0.07 1.04 7.05 -51.93 -0.37 0.68 16 27 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.41 4.80 8.66 -34.47 -0.30 4.50 16 31 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 32 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.09 0.66 8.10 -51.93 -0.42 0.23 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -35.17 340.63 -9.22 -44.38 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.21 Total: 0.07 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.69 Total: -7.64 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: 0.14 Total: -66.70 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.91 Total: -44.90 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.65 Total: 52.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.17 -9.22 -44.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355803118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.862 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds