Wall clock time and date at job start Fri Apr 10 2020 17:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00279 * 2 1 4 4 C 1.50692 * 109.47217 * 275.57065 * 3 2 1 5 5 H 1.07997 * 120.00274 * 4.71492 * 4 3 2 6 6 C 1.37880 * 120.00166 * 184.71152 * 4 3 2 7 7 N 1.31516 * 119.99667 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00374 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47140 * 89.99967 * 8 6 4 10 10 H 1.48502 * 109.47390 * 210.00583 * 8 6 4 11 11 H 1.48505 * 109.46892 * 330.00330 * 8 6 4 12 12 S 1.65603 * 119.99585 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40272 * 159.57137 * 12 2 1 14 14 O 1.42101 * 106.40427 * 26.65409 * 12 2 1 15 15 N 1.65593 * 107.22037 * 273.10914 * 12 2 1 16 16 C 1.46502 * 119.99841 * 62.77910 * 15 12 2 17 17 C 1.53004 * 109.47330 * 164.44116 * 16 15 12 18 18 C 1.50700 * 109.47141 * 179.97438 * 17 16 15 19 19 C 1.38643 * 120.79412 * 89.99923 * 18 17 16 20 20 C 1.38197 * 119.16942 * 179.97438 * 19 18 17 21 21 N 1.31873 * 120.76076 * 0.26026 * 20 19 18 22 22 C 1.31866 * 121.72583 * 359.47215 * 21 20 19 23 23 C 1.38211 * 120.76430 * 0.52632 * 22 21 20 24 24 H 1.09001 * 109.46856 * 269.99857 * 1 2 3 25 25 H 1.09002 * 109.47017 * 29.99593 * 1 2 3 26 26 H 1.09000 * 109.47200 * 149.99914 * 1 2 3 27 27 H 1.09000 * 109.47172 * 35.57601 * 3 2 1 28 28 H 1.09001 * 109.46925 * 155.56728 * 3 2 1 29 29 H 0.97007 * 119.99726 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00861 * 242.77699 * 15 12 2 31 31 H 1.09003 * 109.47390 * 44.44028 * 16 15 12 32 32 H 1.09004 * 109.47092 * 284.44526 * 16 15 12 33 33 H 1.08999 * 109.46736 * 60.00373 * 17 16 15 34 34 H 1.08993 * 109.47296 * 299.99785 * 17 16 15 35 35 H 1.08001 * 120.41387 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.62424 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.62273 * 180.26801 * 22 21 20 38 38 H 1.08002 * 120.41934 * 179.76313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3293 1.7726 -1.4140 5 1 1.8447 1.2456 -2.2225 6 6 3.0685 2.9068 -1.6757 7 7 3.6590 3.5484 -0.6911 8 14 3.2313 3.5320 -3.4284 9 1 2.1294 4.4841 -3.7186 10 1 4.5366 4.2216 -3.5888 11 1 3.1573 2.3870 -4.3712 12 16 2.2929 -1.4342 0.0006 13 8 3.6000 -1.1433 -0.4753 14 8 1.4384 -2.3911 -0.6105 15 7 2.4637 -1.9010 1.5802 16 6 1.2784 -2.1952 2.3893 17 6 1.6963 -2.9591 3.6474 18 6 0.4770 -3.2611 4.4800 19 6 -0.2375 -4.4344 4.2927 20 6 -1.3502 -4.6776 5.0753 21 7 -1.7367 -3.8070 5.9873 22 6 -1.0787 -2.6835 6.1964 23 6 0.0434 -2.3724 5.4519 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6554 2.0013 0.5979 28 1 3.1895 1.1154 0.4251 29 1 4.1794 4.3461 -0.8752 30 1 3.3485 -1.9797 1.9699 31 1 0.5841 -2.8030 1.8091 32 1 0.7929 -1.2620 2.6752 33 1 2.3905 -2.3512 4.2277 34 1 2.1817 -3.8921 3.3615 35 1 0.0722 -5.1497 3.5451 36 1 -1.9124 -5.5890 4.9354 37 1 -1.4230 -1.9965 6.9553 38 1 0.5759 -1.4489 5.6252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355803118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:05 Heat of formation + Delta-G solvation = -72.573435 kcal Electronic energy + Delta-G solvation = -21952.301627 eV Core-core repulsion = 18534.299071 eV Total energy + Delta-G solvation = -3418.002556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05423 -38.31187 -37.33078 -37.13744 -36.85038 -34.51052 -34.21051 -32.06119 -29.70407 -29.65944 -26.79477 -24.88991 -24.33631 -24.21102 -22.45686 -20.42064 -18.99052 -18.45321 -18.22901 -17.54280 -17.31267 -17.22726 -16.69510 -16.39471 -15.99841 -15.59649 -15.07282 -14.93295 -14.73236 -14.44674 -14.12664 -14.00312 -13.88009 -13.37985 -13.19858 -13.15396 -13.02199 -12.92784 -12.88793 -12.70595 -12.48035 -12.37040 -12.15525 -11.95869 -11.75699 -10.62054 -10.56817 -10.43891 -10.37579 -10.02571 -9.78762 -8.20919 -6.32778 -0.33119 0.26281 0.32138 1.38936 1.41295 1.51639 2.03805 2.40244 2.64504 2.90604 3.10372 3.45765 3.64285 3.73305 3.84391 3.95986 4.10019 4.23427 4.25653 4.31274 4.48615 4.60349 4.71414 4.78808 4.81985 4.85200 4.98811 5.06547 5.11962 5.13930 5.20779 5.44735 5.47290 5.70004 5.83901 5.87123 6.09265 6.16829 6.75928 7.08579 7.36354 8.86648 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003384 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.650954 B = 8272.036861 C = 8616.146037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.271 3.729 4 C -0.553 4.553 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.274 1.274 12 S 2.799 3.201 13 O -1.011 7.011 14 O -1.010 7.010 15 N -1.118 6.118 16 C 0.120 3.880 17 C -0.082 4.082 18 C -0.045 4.045 19 C -0.172 4.172 20 C 0.086 3.914 21 N -0.518 5.518 22 C 0.086 3.914 23 C -0.170 4.170 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.021 0.979 29 H 0.268 0.732 30 H 0.424 0.576 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -13.357 13.619 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.148 3.852 4 C -0.592 4.592 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.199 1.199 12 S 2.807 3.193 13 O -0.995 6.995 14 O -0.994 6.994 15 N -0.882 5.882 16 C -0.006 4.006 17 C -0.121 4.121 18 C -0.054 4.054 19 C -0.192 4.192 20 C -0.070 4.070 21 N -0.228 5.228 22 C -0.070 4.070 23 C -0.190 4.190 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.260 0.740 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.026 -13.833 13.306 20.804 hybrid contribution 1.251 0.951 -0.947 1.835 sum -6.774 -12.882 12.359 19.094 Atomic orbital electron populations 1.21608 0.78221 1.03625 1.02449 1.57463 1.15644 1.21973 1.89370 1.18621 0.90610 0.80194 0.95820 1.21870 1.31905 1.10659 0.94813 0.92911 1.25749 0.94738 0.96826 1.01442 1.70005 1.33728 1.19386 1.33153 0.85587 0.78025 0.78440 0.79860 1.19022 1.20399 1.19915 1.01177 0.72001 0.72467 0.73700 1.93579 1.41049 1.85173 1.79681 1.93503 1.69100 1.61159 1.75590 1.55756 1.15489 1.85101 1.31859 1.21379 0.86402 1.00397 0.92470 1.20789 0.94987 1.02448 0.93838 1.20318 0.95946 0.94045 0.95070 1.22357 0.96844 0.98480 1.01487 1.23141 0.94457 0.98477 0.90900 1.67691 1.31999 1.04120 1.18981 1.23147 0.91868 0.93759 0.98216 1.22358 0.98578 1.01233 0.96800 0.90872 0.91115 0.90744 0.95394 0.96097 0.92354 0.73988 0.90601 0.90907 0.88204 0.88475 0.82988 0.80958 0.81004 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.76 10.69 127.77 1.37 4.13 16 2 N -1.00 -40.16 3.23 -543.24 -1.75 -41.91 16 3 C 0.27 13.54 5.10 85.63 0.44 13.97 16 4 C -0.55 -31.20 9.38 25.60 0.24 -30.96 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.68 5.46 84.66 0.46 1.15 16 7 N -0.92 -53.91 13.29 21.45 0.28 -53.62 16 8 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 S 2.80 106.25 6.09 -56.49 -0.34 105.91 16 13 O -1.01 -48.11 16.99 -128.00 -2.17 -50.29 16 14 O -1.01 -40.22 16.34 -128.00 -2.09 -42.31 16 15 N -1.12 -28.72 6.05 -187.47 -1.13 -29.85 16 16 C 0.12 2.38 6.24 86.38 0.54 2.92 16 17 C -0.08 -1.16 5.54 29.85 0.17 -0.99 16 18 C -0.04 -0.69 5.17 -19.67 -0.10 -0.79 16 19 C -0.17 -2.56 9.82 22.36 0.22 -2.34 16 20 C 0.09 1.41 11.18 84.68 0.95 2.36 16 21 N -0.52 -10.25 10.36 -195.84 -2.03 -12.28 16 22 C 0.09 1.42 11.18 84.68 0.95 2.36 16 23 C -0.17 -2.52 9.82 22.36 0.22 -2.30 16 24 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 25 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 26 H 0.07 2.24 7.05 -2.39 -0.02 2.23 16 27 H 0.03 1.40 8.11 -2.39 -0.02 1.38 16 28 H 0.02 1.13 7.50 -2.39 -0.02 1.11 16 29 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 30 H 0.42 9.16 8.66 -96.75 -0.84 8.32 16 31 H 0.08 1.56 7.79 -2.39 -0.02 1.54 16 32 H 0.07 1.38 8.05 -2.38 -0.02 1.36 16 33 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -75.21 340.63 -1.55 -76.76 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.23 Total: 11.59 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 5.44 Total: -10.50 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -4.63 Total: -137.67 kcal Atomic # 8 Polarization: -88.34 SS G_CDS: -4.27 Total: -92.60 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 106.25 SS G_CDS: -0.34 Total: 105.91 kcal Total: -75.21 -1.55 -76.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355803118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.182 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds