Wall clock time and date at job start Fri Apr 10 2020 17:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 116.99695 * 2 1 4 4 O 1.20822 * 120.00283 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99549 * 179.72604 * 3 2 1 6 6 H 1.08994 * 109.58812 * 320.27060 * 5 3 2 7 7 C 1.53188 * 109.58503 * 80.55890 * 5 3 2 8 8 H 1.09002 * 109.49491 * 185.10233 * 7 5 3 9 9 C 1.50699 * 109.49927 * 305.19678 * 7 5 3 10 10 O 1.20827 * 119.99839 * 0.02562 * 9 7 5 11 11 O 1.34223 * 120.00263 * 180.02562 * 9 7 5 12 12 C 1.45198 * 117.00407 * 180.02562 * 11 9 7 13 13 C 1.53035 * 109.31614 * 65.15252 * 7 5 3 14 14 C 1.53042 * 109.53800 * 61.36299 * 13 7 5 15 15 C 1.53190 * 109.31251 * 298.63445 * 14 13 7 16 16 N 1.46928 * 109.58443 * 199.98945 * 5 3 2 17 17 C 1.34774 * 120.62957 * 113.81548 * 16 5 3 18 18 O 1.21684 * 120.00443 * 354.72018 * 17 16 5 19 19 C 1.46384 * 119.99905 * 174.72433 * 17 16 5 20 20 H 1.07999 * 119.99525 * 5.81830 * 19 17 16 21 21 C 1.40045 * 119.99929 * 185.81707 * 19 17 16 22 22 N 1.30673 * 120.00085 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00002 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47275 * 60.00031 * 23 21 19 25 25 H 1.48504 * 109.46972 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47103 * 300.00136 * 23 21 19 27 27 H 1.09000 * 109.47413 * 300.00104 * 1 2 3 28 28 H 1.09002 * 109.47527 * 60.00470 * 1 2 3 29 29 H 1.09004 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47020 * 59.99405 * 12 11 9 31 31 H 1.08998 * 109.47474 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.46808 * 300.00158 * 12 11 9 33 33 H 1.09002 * 109.45977 * 181.38342 * 13 7 5 34 34 H 1.08995 * 109.45892 * 301.34075 * 13 7 5 35 35 H 1.08993 * 109.49946 * 58.58907 * 14 13 7 36 36 H 1.09004 * 109.49278 * 178.68517 * 14 13 7 37 37 H 1.08998 * 109.58711 * 174.42334 * 15 14 13 38 38 H 1.09007 * 109.58564 * 294.85021 * 15 14 13 39 39 H 0.96997 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0062 6 1 3.9697 0.5067 0.6660 7 6 4.0975 1.0622 -1.4148 8 1 5.1868 1.0291 -1.3947 9 6 3.5642 -0.2367 -1.9620 10 8 2.8339 -0.9224 -1.2865 11 8 3.9004 -0.6318 -3.2000 12 6 3.3493 -1.8932 -3.6618 13 6 3.6380 2.2188 -2.3053 14 6 4.2063 3.5347 -1.7691 15 6 3.6762 3.7754 -0.3521 16 7 3.9880 2.6007 0.4784 17 6 4.6484 2.7360 1.6454 18 8 4.8165 1.7693 2.3651 19 6 5.1634 4.0460 2.0474 20 1 4.9340 4.9207 1.4569 21 6 5.9534 4.1649 3.1976 22 7 6.2312 3.1065 3.9118 23 14 6.6111 5.8364 3.7102 24 1 5.4755 6.7606 3.9579 25 1 7.4133 5.6932 4.9517 26 1 7.4681 6.3842 2.6282 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.2607 -1.8374 -3.6576 31 1 3.6986 -2.0933 -4.6747 32 1 3.6744 -2.6958 -2.9997 33 1 3.9941 2.0573 -3.3228 34 1 2.5491 2.2667 -2.3052 35 1 5.2945 3.4783 -1.7457 36 1 3.8978 4.3551 -2.4172 37 1 4.1541 4.6586 0.0717 38 1 2.5966 3.9223 -0.3859 39 1 6.7780 3.1889 4.7087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357652424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:23 Heat of formation + Delta-G solvation = -213.689241 kcal Electronic energy + Delta-G solvation = -26282.128683 eV Core-core repulsion = 22382.961264 eV Total energy + Delta-G solvation = -3899.167419 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42503 -41.08469 -39.92016 -37.92860 -37.56409 -36.97090 -34.72707 -33.81287 -32.71344 -29.43858 -28.64809 -28.24801 -26.33163 -25.50615 -22.95292 -22.61071 -21.88886 -20.43822 -19.00996 -18.51848 -18.31462 -17.94330 -17.81698 -17.44604 -17.06768 -16.83327 -16.25023 -15.82144 -15.38983 -15.06787 -14.81281 -14.56139 -14.34561 -14.22161 -14.10707 -13.83704 -13.55781 -13.15000 -13.09067 -13.00470 -12.78379 -12.69149 -12.59842 -12.08959 -12.02044 -11.90799 -11.85875 -11.70100 -11.57018 -11.31547 -11.18329 -10.91175 -9.88878 -9.28604 -8.31842 -6.87220 1.05264 1.14372 1.41742 1.44956 1.54573 1.59737 1.71083 2.25338 2.44668 2.70961 3.29688 3.54137 3.61169 3.76534 3.85566 4.09618 4.22614 4.24422 4.25240 4.30210 4.37060 4.38561 4.47163 4.59661 4.68903 4.75257 4.81101 4.92767 5.03462 5.04893 5.29984 5.34545 5.39778 5.51188 5.65148 6.02219 6.20417 6.71225 6.77244 6.85421 7.28251 8.36540 8.63115 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.005002 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.397721 B = 5596.485693 C = 5887.375854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.330 6.330 3 C 0.455 3.545 4 O -0.524 6.524 5 C 0.168 3.832 6 H 0.093 0.907 7 C -0.078 4.078 8 H 0.135 0.865 9 C 0.455 3.545 10 O -0.491 6.491 11 O -0.355 6.355 12 C 0.029 3.971 13 C -0.102 4.102 14 C -0.122 4.122 15 C 0.103 3.897 16 N -0.619 5.619 17 C 0.542 3.458 18 O -0.628 6.628 19 C -0.559 4.559 20 H 0.099 0.901 21 C 0.030 3.970 22 N -0.820 5.820 23 Si 0.998 3.002 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.247 1.247 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 -2.753 -17.259 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.244 6.244 3 C 0.297 3.703 4 O -0.414 6.414 5 C 0.060 3.940 6 H 0.111 0.889 7 C -0.099 4.099 8 H 0.152 0.848 9 C 0.297 3.703 10 O -0.377 6.377 11 O -0.271 6.271 12 C -0.064 4.064 13 C -0.139 4.139 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.356 5.356 17 C 0.350 3.650 18 O -0.515 6.515 19 C -0.595 4.595 20 H 0.117 0.883 21 C -0.186 4.186 22 N -0.449 5.449 23 Si 0.817 3.183 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.170 1.170 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.143 0.857 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.237 -3.318 -16.533 17.657 hybrid contribution -0.241 0.056 0.931 0.963 sum -5.478 -3.262 -15.602 16.854 Atomic orbital electron populations 1.23462 0.76602 1.05010 1.01827 1.86921 1.23402 1.31451 1.82593 1.24496 0.92605 0.81767 0.71440 1.90527 1.67466 1.36910 1.46452 1.19976 0.86811 0.90592 0.96624 0.88909 1.21320 1.04056 0.91894 0.92587 0.84770 1.23525 0.78502 0.87745 0.80549 1.90832 1.33591 1.54644 1.58683 1.86468 1.68323 1.41285 1.31051 1.23560 0.99508 0.81658 1.01658 1.21560 1.00632 0.92274 0.99456 1.21909 1.01501 0.97484 0.95105 1.21991 1.00343 0.88426 0.91150 1.48051 1.59828 1.04410 1.23267 1.18803 0.77026 0.90582 0.78598 1.90566 1.63725 1.43008 1.54155 1.21431 1.33649 0.93011 1.11407 0.88286 1.27010 0.94313 1.02425 0.94808 1.70176 1.28803 1.32828 1.13065 0.85066 0.78847 0.76064 0.78356 1.18169 1.20127 1.17049 0.93114 0.91777 0.85655 0.91956 0.84711 0.92195 0.86783 0.92559 0.90584 0.87254 0.89069 0.92085 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 10.56 113.37 1.20 1.91 16 2 O -0.33 -12.65 6.97 -43.40 -0.30 -12.96 16 3 C 0.45 19.08 5.74 71.24 0.41 19.49 16 4 O -0.52 -22.98 13.69 21.98 0.30 -22.67 16 5 C 0.17 7.18 2.41 44.23 0.11 7.29 16 6 H 0.09 4.63 7.03 -2.39 -0.02 4.62 16 7 C -0.08 -2.49 2.56 -11.47 -0.03 -2.52 16 8 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 9 C 0.46 13.70 6.96 71.24 0.50 14.20 16 10 O -0.49 -17.24 11.91 29.96 0.36 -16.88 16 11 O -0.35 -8.35 10.45 -51.35 -0.54 -8.89 16 12 C 0.03 0.49 10.56 113.37 1.20 1.68 16 13 C -0.10 -2.61 4.95 30.62 0.15 -2.46 16 14 C -0.12 -3.24 6.08 30.67 0.19 -3.05 16 15 C 0.10 3.84 5.86 86.31 0.51 4.35 16 16 N -0.62 -29.01 2.56 -803.52 -2.05 -31.06 16 17 C 0.54 31.67 7.62 86.36 0.66 32.33 16 18 O -0.63 -42.39 14.48 -4.30 -0.06 -42.45 16 19 C -0.56 -31.06 8.88 24.83 0.22 -30.84 16 20 H 0.10 4.86 5.66 -2.91 -0.02 4.84 16 21 C 0.03 1.64 5.50 85.30 0.47 2.11 16 22 N -0.82 -49.67 11.84 21.83 0.26 -49.41 16 23 Si 1.00 40.01 29.56 68.60 2.03 42.04 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 27 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.06 1.68 8.13 -2.39 -0.02 1.67 16 29 H 0.13 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.11 2.16 8.09 -2.39 -0.02 2.14 16 34 H 0.06 1.57 7.09 -2.39 -0.02 1.56 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 3.46 5.33 -2.39 -0.01 3.45 16 38 H 0.06 2.37 6.16 -2.38 -0.01 2.36 16 39 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 Total: -1.00 -81.41 321.35 6.63 -74.78 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.08 Total: 23.03 kcal Atomic # 6 Polarization: 38.92 SS G_CDS: 5.57 Total: 44.49 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.80 Total: -80.47 kcal Atomic # 8 Polarization: -103.61 SS G_CDS: -0.24 Total: -103.86 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -81.41 6.63 -74.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357652424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.909 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds