Wall clock time and date at job start Fri Apr 10 2020 17:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47103 * 191.53976 * 3 2 1 5 5 C 1.37099 * 120.00193 * 82.74100 * 4 3 2 6 6 H 1.07996 * 119.99512 * 48.15700 * 5 4 3 7 7 C 1.38951 * 119.99991 * 228.43823 * 5 4 3 8 8 N 1.31412 * 120.00212 * 20.56231 * 7 5 4 9 9 Si 1.86794 * 119.99778 * 200.56218 * 7 5 4 10 10 H 1.48498 * 109.47418 * 60.00114 * 9 7 5 11 11 H 1.48499 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47471 * 300.00041 * 9 7 5 13 13 C 1.34777 * 119.99907 * 262.74479 * 4 3 2 14 14 O 1.21290 * 119.99893 * 182.53490 * 13 4 3 15 15 C 1.50695 * 119.99945 * 2.53084 * 13 4 3 16 16 O 1.42904 * 109.68156 * 38.26693 * 15 13 4 17 17 C 1.53329 * 109.68368 * 277.74799 * 15 13 4 18 18 C 1.52725 * 108.38852 * 170.44485 * 17 15 13 19 19 C 1.50633 * 110.61475 * 51.05559 * 18 17 15 20 20 C 1.38903 * 117.74609 * 162.57172 * 19 18 17 21 21 C 1.37935 * 120.54049 * 179.39366 * 20 19 18 22 22 C 1.38264 * 119.77548 * 0.05306 * 21 20 19 23 23 C 1.37930 * 119.76764 * 0.11517 * 22 21 20 24 24 C 1.37664 * 122.56469 * 342.23462 * 19 18 17 25 25 C 1.50632 * 122.56131 * 0.72758 * 24 19 18 26 26 H 4.40646 * 5.51448 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47233 * 71.54047 * 3 2 1 28 28 H 1.08998 * 109.47352 * 311.53897 * 3 2 1 29 29 H 0.96995 * 120.00126 * 184.88759 * 8 7 5 30 30 H 0.96701 * 114.00074 * 72.81565 * 16 15 13 31 31 H 1.08999 * 109.68008 * 290.13572 * 17 15 13 32 32 H 1.08991 * 109.67937 * 50.69059 * 17 15 13 33 33 H 1.09002 * 109.21848 * 290.77246 * 18 17 15 34 34 H 1.09000 * 109.25808 * 171.36522 * 18 17 15 35 35 H 1.08004 * 119.73781 * 359.44553 * 20 19 18 36 36 H 1.08011 * 120.11335 * 180.02562 * 21 20 19 37 37 H 1.07993 * 120.11817 * 180.10166 * 22 21 20 38 38 H 1.07994 * 119.72860 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.25066 * 221.94073 * 25 24 19 40 40 H 1.09005 * 109.22061 * 102.49834 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3542 0.2763 5 6 3.2206 1.8009 1.5696 6 1 3.6896 1.1855 2.3230 7 6 2.7001 3.0429 1.9121 8 7 1.7934 3.6089 1.1475 9 14 3.2891 3.9079 3.4593 10 1 4.7522 4.1451 3.3674 11 1 2.5852 5.2081 3.5980 12 1 2.9988 3.0586 4.6424 13 6 3.4970 2.1604 -0.7409 14 8 3.9440 3.2640 -0.5101 15 6 3.3478 1.6904 -2.1649 16 8 2.1407 0.9375 -2.2993 17 6 4.5474 0.8158 -2.5485 18 6 4.2563 0.1641 -3.8987 19 6 3.8278 1.1991 -4.9058 20 6 3.8817 0.8543 -6.2502 21 6 3.4910 1.7534 -7.2206 22 6 3.0429 3.0087 -6.8531 23 6 2.9920 3.3541 -5.5187 24 6 3.3861 2.4506 -4.5400 25 6 3.3095 2.8953 -3.1028 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0095 -0.3246 -0.9747 28 1 3.0097 -0.6806 0.7692 29 1 1.4820 4.5055 1.3471 30 1 1.3370 1.4746 -2.2725 31 1 5.4424 1.4333 -2.6248 32 1 4.6960 0.0448 -1.7926 33 1 3.4606 -0.5712 -3.7781 34 1 5.1557 -0.3362 -4.2578 35 1 4.2315 -0.1261 -6.5383 36 1 3.5353 1.4779 -8.2640 37 1 2.7341 3.7164 -7.6081 38 1 2.6423 4.3350 -5.2324 39 1 2.3809 3.4439 -2.9454 40 1 4.1543 3.5483 -2.8838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370576173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:31 Heat of formation + Delta-G solvation = -11.655239 kcal Electronic energy + Delta-G solvation = -24954.348814 eV Core-core repulsion = 21507.084261 eV Total energy + Delta-G solvation = -3447.264553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69972 -40.04233 -37.82064 -36.68318 -34.92317 -34.23236 -33.26298 -32.86235 -30.89626 -29.57939 -28.09856 -26.80393 -24.80076 -23.79748 -23.01194 -21.57750 -20.36910 -19.26667 -18.99391 -17.90402 -17.26431 -17.08706 -16.60337 -16.15110 -15.91436 -15.70089 -15.63026 -15.21918 -15.13926 -14.80566 -14.00568 -13.94816 -13.88848 -13.68823 -13.46945 -13.35672 -13.09969 -12.87303 -12.77628 -12.65553 -12.34166 -12.23566 -12.20347 -11.84623 -11.66636 -11.20735 -11.04951 -10.75248 -10.70656 -9.90869 -9.59851 -9.38242 -9.23297 -8.26802 -6.08414 0.51312 0.54300 1.34991 1.42806 1.47048 1.93323 2.24328 2.31593 2.40577 2.89491 3.00862 3.19549 3.29240 3.69277 3.81997 3.90881 3.99274 4.07945 4.10740 4.22958 4.28613 4.43140 4.55078 4.57505 4.70157 4.74806 4.81691 4.91832 4.93258 5.03903 5.06171 5.19176 5.22757 5.34507 5.38596 5.46513 5.64930 5.67098 5.83264 6.15293 6.19691 6.50858 6.99390 7.04694 7.12478 7.59087 8.22647 8.80158 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.005049 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.990452 B = 5544.304465 C = 6039.601496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.176 4.176 3 C 0.207 3.793 4 N -0.450 5.450 5 C -0.369 4.369 6 H 0.080 0.920 7 C 0.032 3.968 8 N -0.870 5.870 9 Si 0.963 3.037 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.257 1.257 13 C 0.460 3.540 14 O -0.592 6.592 15 C 0.137 3.863 16 O -0.532 6.532 17 C -0.102 4.102 18 C -0.064 4.064 19 C -0.077 4.077 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.084 4.084 25 C -0.082 4.082 26 H 0.233 0.767 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.259 0.741 30 H 0.375 0.625 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.058 0.942 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -7.801 -15.060 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.178 4.178 3 C 0.085 3.915 4 N -0.170 5.170 5 C -0.496 4.496 6 H 0.098 0.902 7 C -0.175 4.175 8 N -0.505 5.505 9 Si 0.787 3.213 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.182 1.182 13 C 0.248 3.752 14 O -0.474 6.474 15 C 0.093 3.907 16 O -0.338 6.338 17 C -0.139 4.139 18 C -0.100 4.100 19 C -0.077 4.077 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.084 4.084 25 C -0.120 4.120 26 H 0.250 0.750 27 H 0.138 0.862 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.223 0.777 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.212 -7.631 -14.944 16.925 hybrid contribution -0.708 1.696 1.299 2.250 sum 1.504 -5.935 -13.645 14.956 Atomic orbital electron populations 1.25279 0.96500 1.00597 1.03182 1.23943 0.95512 0.99939 0.98372 1.18912 0.84134 0.86080 1.02382 1.43429 1.56022 1.12563 1.05035 1.19295 1.39008 1.04851 0.86441 0.90250 1.26023 0.92285 0.98913 1.00240 1.69981 1.24859 1.14067 1.41582 0.85498 0.78315 0.77854 0.79591 1.20543 1.21303 1.18175 1.21501 0.79858 0.85633 0.88163 1.90472 1.48936 1.22539 1.85432 1.21073 0.88011 0.92102 0.89505 1.86470 1.14756 1.36936 1.95660 1.21627 0.94406 0.98877 0.99012 1.20346 1.02701 0.96163 0.90835 1.19793 0.98664 0.93805 0.95420 1.21424 1.00459 1.00820 0.91464 1.21409 0.98710 0.93542 1.00543 1.21299 1.00209 0.97783 0.95360 1.21283 1.01139 0.99339 0.93714 1.19491 1.00401 0.94860 0.93633 1.20730 1.02310 0.97137 0.91784 0.75015 0.86211 0.90241 0.93229 0.77713 0.90784 0.89911 0.89191 0.88066 0.83641 0.83344 0.84104 0.86617 0.92369 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.86 19.25 74.32 1.43 -7.43 16 2 C -0.18 -7.26 11.80 31.13 0.37 -6.90 16 3 C 0.21 8.38 5.29 84.57 0.45 8.83 16 4 N -0.45 -22.50 2.44 -645.41 -1.58 -24.08 16 5 C -0.37 -20.61 9.02 84.04 0.76 -19.85 16 6 H 0.08 4.27 7.91 -2.91 -0.02 4.25 16 7 C 0.03 1.83 4.34 84.93 0.37 2.20 16 8 N -0.87 -52.39 12.40 21.66 0.27 -52.13 16 9 Si 0.96 45.99 29.60 68.60 2.03 48.02 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.46 22.95 5.94 87.66 0.52 23.47 16 14 O -0.59 -34.96 14.25 -3.06 -0.04 -35.01 16 15 C 0.14 5.19 0.56 -11.52 -0.01 5.18 16 16 O -0.53 -18.70 7.65 -148.98 -1.14 -19.84 16 17 C -0.10 -3.12 4.71 30.61 0.14 -2.97 16 18 C -0.06 -1.53 5.28 29.74 0.16 -1.37 16 19 C -0.08 -2.01 5.68 -19.86 -0.11 -2.12 16 20 C -0.12 -2.59 9.61 22.36 0.21 -2.38 16 21 C -0.12 -2.40 10.05 22.20 0.22 -2.18 16 22 C -0.13 -2.81 10.05 22.20 0.22 -2.58 16 23 C -0.14 -3.74 9.61 22.36 0.21 -3.53 16 24 C -0.08 -2.56 5.62 -19.86 -0.11 -2.67 16 25 C -0.08 -3.04 4.24 29.74 0.13 -2.91 16 26 H 0.23 6.72 7.80 -4.41 -0.03 6.69 16 27 H 0.12 4.22 4.18 -2.39 -0.01 4.21 16 28 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 29 H 0.26 15.17 8.32 -92.71 -0.77 14.40 16 30 H 0.37 13.60 8.71 -74.06 -0.65 12.96 16 31 H 0.07 2.33 8.10 -2.39 -0.02 2.31 16 32 H 0.08 2.43 6.77 -2.39 -0.02 2.42 16 33 H 0.09 2.12 7.73 -2.39 -0.02 2.11 16 34 H 0.10 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.15 2.20 8.05 -2.91 -0.02 2.17 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.12 3.08 8.05 -2.91 -0.02 3.06 16 39 H 0.06 2.32 8.06 -2.39 -0.02 2.30 16 40 H 0.07 2.95 7.53 -2.38 -0.02 2.93 16 Total: -1.00 -72.70 332.26 4.92 -67.79 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.41 Total: 32.45 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.96 Total: -17.21 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -1.31 Total: -76.20 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -1.18 Total: -54.85 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.70 4.92 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370576173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.130 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds